Wall clock time and date at job start Tue Mar 31 2020 11:42:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86803 * 120.00125 * 2 1
4 4 H 1.48500 * 109.47093 * 240.00123 * 3 2 1
5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.47239 * 119.99843 * 3 2 1
7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1
9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1
10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2
11 11 H 1.08997 * 110.89071 * 322.57726 * 10 9 7
12 12 C 1.55164 * 111.00115 * 86.45508 * 10 9 7
13 13 C 1.54324 * 102.93878 * 153.57413 * 12 10 9
14 14 N 1.47025 * 107.27511 * 337.80517 * 13 12 10
15 15 C 1.34769 * 125.64727 * 178.92140 * 14 13 12
16 16 O 1.21288 * 120.00014 * 180.02562 * 15 14 13
17 17 C 1.50702 * 120.00075 * 0.02562 * 15 14 13
18 18 C 1.50704 * 109.46988 * 180.02562 * 17 15 14
19 19 C 1.33999 * 126.90479 * 264.68705 * 18 17 15
20 20 O 1.34454 * 110.14971 * 179.89008 * 19 18 17
21 21 C 1.34811 * 110.88934 * 0.39211 * 20 19 18
22 22 C 1.38938 * 133.49087 * 179.77202 * 21 20 19
23 23 C 1.37850 * 119.81552 * 180.02562 * 22 21 20
24 24 C 1.38744 * 120.68499 * 359.95296 * 23 22 21
25 25 C 1.36739 * 120.41701 * 0.04543 * 24 23 22
26 26 C 1.39406 * 119.71504 * 359.97438 * 25 24 23
27 27 C 1.47425 * 108.69807 * 358.94199 * 14 13 12
28 28 H 0.97000 * 120.00284 * 359.97438 * 1 2 3
29 29 H 0.96999 * 120.00117 * 359.97438 * 9 7 2
30 30 H 1.08994 * 110.71690 * 271.93560 * 12 10 9
31 31 H 1.08994 * 110.72044 * 35.03368 * 12 10 9
32 32 H 1.09003 * 109.87897 * 97.22490 * 13 12 10
33 33 H 1.09000 * 109.87664 * 218.23044 * 13 12 10
34 34 H 1.08994 * 109.47165 * 299.99950 * 17 15 14
35 35 H 1.09002 * 109.46855 * 60.00671 * 17 15 14
36 36 H 1.07995 * 124.92630 * 0.02562 * 19 18 17
37 37 H 1.07997 * 120.09604 * 0.02562 * 22 21 20
38 38 H 1.08005 * 119.65988 * 179.97438 * 23 22 21
39 39 H 1.08005 * 119.79171 * 180.02562 * 24 23 22
40 40 H 1.08003 * 120.14073 * 179.97438 * 25 24 23
41 41 H 1.09000 * 110.36918 * 265.28562 * 27 14 13
42 42 H 1.09005 * 110.36380 * 142.97099 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1040 1.6964 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0903 -1.2021 -0.0040
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0005
11 1 2.9528 -3.5890 -0.6183
12 6 2.4138 -4.0936 1.4463
13 6 2.5173 -5.6288 1.3279
14 7 1.7447 -6.0283 0.1425
15 6 1.6048 -7.2879 -0.3159
16 8 0.9412 -7.5018 -1.3084
17 6 2.2727 -8.4306 0.4047
18 6 1.9618 -9.7228 -0.3058
19 6 0.9813 -10.5873 -0.0112
20 8 1.0089 -11.6269 -0.8635
21 6 2.0153 -11.4946 -1.7506
22 6 2.4665 -12.2746 -2.8081
23 6 3.5517 -11.8609 -3.5507
24 6 4.2000 -10.6705 -3.2545
25 6 3.7717 -9.8883 -2.2180
26 6 2.6762 -10.2906 -1.4555
27 6 1.1491 -4.8227 -0.4618
28 1 -0.4850 0.8400 0.0004
29 1 0.3556 -2.3880 0.0005
30 1 3.3674 -3.6654 1.7549
31 1 1.6227 -3.8101 2.1404
32 1 3.5602 -5.9217 1.2068
33 1 2.1017 -6.0981 2.2196
34 1 3.3511 -8.2727 0.4155
35 1 1.9024 -8.4804 1.4287
36 1 0.2704 -10.4655 0.7926
37 1 1.9686 -13.2025 -3.0476
38 1 3.9006 -12.4694 -4.3720
39 1 5.0486 -10.3600 -3.8461
40 1 4.2800 -8.9627 -1.9911
41 1 0.1321 -4.6785 -0.0972
42 1 1.1556 -4.9007 -1.5491
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001019562964.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:37
Heat of formation + Delta-G solvation = -8.838420 kcal
Electronic energy + Delta-G solvation = -24955.011937 eV
Core-core repulsion = 21286.906000 eV
Total energy + Delta-G solvation = -3668.105937 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.142 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.41832 -41.00462 -38.76883 -38.70210 -35.92380 -34.92297 -33.33738 -31.59347
-31.13941 -30.78248 -29.75787 -28.31455 -25.59795 -24.29413 -24.08752 -23.23842
-21.73910 -21.43317 -20.04307 -19.28183 -18.31016 -18.18103 -17.97341 -17.38120
-17.01942 -16.67517 -16.39775 -16.16867 -15.57800 -15.36246 -15.05460 -14.72912
-14.65308 -14.44628 -14.09220 -13.72487 -13.64280 -13.35101 -13.22199 -13.11959
-13.00650 -12.99398 -12.63126 -12.53294 -12.35257 -12.14525 -11.82151 -11.76064
-11.59643 -11.21240 -10.93302 -10.75405 -9.66245 -9.59159 -9.10622 -9.05106
-7.95285 -5.25646 -0.01429 0.40547 1.26794 1.49120 1.51924 1.57856
1.61858 1.87837 2.05881 2.57324 2.78011 3.35914 3.50443 3.57088
3.63769 3.73507 3.90801 3.96123 4.07938 4.14564 4.19550 4.26882
4.37140 4.42055 4.46766 4.51806 4.54679 4.60503 4.68795 4.74184
4.86379 4.98339 5.02515 5.22487 5.26864 5.27554 5.35913 5.43830
5.47057 5.52549 5.54209 5.72301 6.19673 6.25242 6.56087 7.14923
7.31879 8.03639 8.27533 9.27944
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.027479 B = 0.002414 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1018.730755 B =11595.679780 C =11966.748379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.970 5.970
2 C -0.075 4.075
3 Si 0.974 3.026
4 H -0.279 1.279
5 H -0.299 1.299
6 H -0.273 1.273
7 C -0.240 4.240
8 H 0.081 0.919
9 N -0.731 5.731
10 C 0.164 3.836
11 H 0.059 0.941
12 C -0.145 4.145
13 C 0.106 3.894
14 N -0.613 5.613
15 C 0.522 3.478
16 O -0.587 6.587
17 C -0.051 4.051
18 C -0.181 4.181
19 C 0.018 3.982
20 O -0.206 6.206
21 C 0.019 3.981
22 C -0.117 4.117
23 C -0.095 4.095
24 C -0.137 4.137
25 C -0.090 4.090
26 C -0.139 4.139
27 C 0.109 3.891
28 H 0.251 0.749
29 H 0.373 0.627
30 H 0.085 0.915
31 H 0.062 0.938
32 H 0.096 0.904
33 H 0.096 0.904
34 H 0.125 0.875
35 H 0.141 0.859
36 H 0.240 0.760
37 H 0.150 0.850
38 H 0.167 0.833
39 H 0.153 0.847
40 H 0.128 0.872
41 H 0.055 0.945
42 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.859 -25.911 1.837 27.784
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.621 5.621
2 C -0.267 4.267
3 Si 0.803 3.197
4 H -0.205 1.205
5 H -0.225 1.225
6 H -0.199 1.199
7 C -0.372 4.372
8 H 0.099 0.901
9 N -0.370 5.370
10 C 0.055 3.945
11 H 0.077 0.923
12 C -0.186 4.186
13 C -0.016 4.016
14 N -0.347 5.347
15 C 0.313 3.687
16 O -0.467 6.467
17 C -0.090 4.090
18 C -0.182 4.182
19 C -0.047 4.047
20 O -0.108 6.108
21 C -0.028 4.028
22 C -0.135 4.135
23 C -0.113 4.113
24 C -0.155 4.155
25 C -0.109 4.109
26 C -0.140 4.140
27 C -0.016 4.016
28 H 0.060 0.940
29 H 0.205 0.795
30 H 0.103 0.897
31 H 0.081 0.919
32 H 0.114 0.886
33 H 0.114 0.886
34 H 0.143 0.857
35 H 0.159 0.841
36 H 0.256 0.744
37 H 0.168 0.832
38 H 0.185 0.815
39 H 0.171 0.829
40 H 0.146 0.854
41 H 0.073 0.927
42 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 9.481 -26.197 1.284 27.890
hybrid contribution -0.498 1.575 -0.155 1.659
sum 8.983 -24.623 1.129 26.234
Atomic orbital electron populations
1.69816 1.06737 1.26218 1.59300 1.25594 0.96335 1.01223 1.03591
0.85200 0.77148 0.79039 0.78288 1.20549 1.22533 1.19921 1.19564
0.91569 0.84722 1.41320 0.90082 1.42417 1.05421 1.00630 1.88556
1.21456 0.93644 0.84077 0.95362 0.92303 1.23202 1.02776 0.94028
0.98545 1.22272 0.97002 0.94953 0.87366 1.48540 1.51121 1.05376
1.29664 1.20990 0.80600 0.82923 0.84235 1.90710 1.43238 1.84301
1.28483 1.19984 1.03330 0.85797 0.99863 1.20724 0.99833 0.98553
0.99128 1.24401 0.99404 0.85582 0.95279 1.83976 1.45630 1.43573
1.37593 1.20072 0.90169 0.97608 0.94913 1.20337 0.98959 1.00768
0.93480 1.21353 0.93918 0.96665 0.99322 1.21167 1.01569 0.95141
0.97640 1.20537 0.94987 1.00094 0.95236 1.20106 0.99157 0.96043
0.98662 1.22164 0.96954 0.84833 0.97603 0.94014 0.79464 0.89658
0.91880 0.88567 0.88570 0.85714 0.84149 0.74356 0.83248 0.81544
0.82948 0.85385 0.92651 0.92808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16
2 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16
3 Si 0.97 45.03 29.55 68.60 2.03 47.06 16
4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16
6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16
7 C -0.24 -12.84 9.98 84.04 0.84 -12.00 16
8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16
9 N -0.73 -35.76 5.28 -316.36 -1.67 -37.43 16
10 C 0.16 6.17 3.69 46.38 0.17 6.34 16
11 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16
12 C -0.14 -4.19 6.65 31.79 0.21 -3.98 16
13 C 0.11 2.17 6.49 86.73 0.56 2.73 16
14 N -0.61 -17.09 3.33 -811.78 -2.70 -19.79 16
15 C 0.52 14.87 7.84 87.66 0.69 15.55 16
16 O -0.59 -22.82 16.29 -3.05 -0.05 -22.87 16
17 C -0.05 -0.92 5.44 29.10 0.16 -0.76 16
18 C -0.18 -4.12 4.85 -18.59 -0.09 -4.21 16
19 C 0.02 0.36 11.89 66.85 0.79 1.16 16
20 O -0.21 -5.06 10.58 -8.99 -0.10 -5.15 16
21 C 0.02 0.48 7.42 22.99 0.17 0.65 16
22 C -0.12 -2.26 10.07 22.35 0.23 -2.04 16
23 C -0.09 -1.50 10.01 22.30 0.22 -1.27 16
24 C -0.14 -2.42 9.98 22.04 0.22 -2.20 16
25 C -0.09 -2.02 10.05 22.20 0.22 -1.80 16
26 C -0.14 -3.54 6.38 -20.22 -0.13 -3.67 16
27 C 0.11 3.88 6.53 86.85 0.57 4.44 16
28 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16
29 H 0.37 19.95 7.71 -92.71 -0.71 19.23 16
30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16
32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16
33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16
34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16
35 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16
36 H 0.24 2.75 8.06 -2.91 -0.02 2.72 16
37 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16
38 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16
39 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16
40 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16
41 H 0.06 2.10 8.00 -2.39 -0.02 2.08 16
42 H 0.05 2.12 8.04 -2.38 -0.02 2.10 16
Total: -1.00 -76.69 359.32 3.42 -73.27
By element:
Atomic # 1 Polarization: 27.87 SS G_CDS: 0.32 Total: 28.19 kcal
Atomic # 6 Polarization: -10.11 SS G_CDS: 5.30 Total: -4.81 kcal
Atomic # 7 Polarization: -111.61 SS G_CDS: -4.09 Total: -115.70 kcal
Atomic # 8 Polarization: -27.87 SS G_CDS: -0.14 Total: -28.02 kcal
Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal
Total: -76.69 3.42 -73.27 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001019562964.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.434 kcal
(2) G-P(sol) polarization free energy of solvation -76.690 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.256 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.838 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds