Wall clock time and date at job start Tue Mar 31 2020 11:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34262 * 125.75073 * 2 1 4 4 C 1.38042 * 107.41100 * 180.02562 * 3 2 1 5 5 C 1.47436 * 126.41127 * 179.97438 * 4 3 2 6 6 O 1.21604 * 119.99640 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99866 * 0.02562 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.84803 * 334.38426 * 8 7 5 10 10 C 1.53777 * 113.61590 * 105.58390 * 8 7 5 11 11 C 1.54051 * 86.98519 * 89.16159 * 10 8 7 12 12 H 1.08996 * 113.61400 * 270.88125 * 11 10 8 13 13 N 1.46503 * 113.69432 * 139.98964 * 11 10 8 14 14 C 1.36937 * 119.99942 * 107.46798 * 13 11 10 15 15 H 1.07993 * 120.00183 * 359.97438 * 14 13 11 16 16 C 1.38816 * 119.99508 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00513 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99549 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47541 * 59.99859 * 18 16 14 20 20 H 1.48495 * 109.46982 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46744 * 299.99784 * 18 16 14 22 22 C 1.53775 * 87.07702 * 25.43019 * 11 10 8 23 23 C 1.41289 * 107.17436 * 0.22584 * 4 3 2 24 24 C 1.50705 * 125.98709 * 179.74491 * 23 4 3 25 25 F 1.39902 * 109.46445 * 209.99863 * 24 23 4 26 26 F 1.39901 * 109.47067 * 329.99417 * 24 23 4 27 27 N 1.30448 * 108.02429 * 359.61685 * 23 4 3 28 28 H 1.08996 * 109.47595 * 89.99818 * 1 2 3 29 29 H 1.09002 * 109.47184 * 209.99985 * 1 2 3 30 30 H 1.09000 * 109.47254 * 329.99895 * 1 2 3 31 31 H 1.07998 * 126.29427 * 0.02562 * 3 2 1 32 32 H 0.97005 * 120.00161 * 359.72177 * 7 5 4 33 33 H 1.09000 * 113.61189 * 203.66599 * 10 8 7 34 34 H 1.09004 * 113.61698 * 334.56607 * 10 8 7 35 35 H 0.97005 * 120.00023 * 287.46926 * 13 11 10 36 36 H 0.96994 * 120.00228 * 180.02562 * 17 16 14 37 37 H 1.08996 * 113.61615 * 220.01784 * 22 11 10 38 38 H 1.09001 * 113.69368 * 89.12619 * 22 11 10 39 39 H 1.08994 * 109.47005 * 89.99985 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7638 1.5062 -0.0013 6 8 5.8681 0.9970 -0.0023 7 7 4.6405 2.8482 -0.0010 8 6 5.8369 3.6938 -0.0023 9 1 6.7059 3.1983 0.4309 10 6 6.1199 4.3587 -1.3597 11 6 5.2321 5.5236 -0.8824 12 1 4.1767 5.3949 -1.1221 13 7 5.7432 6.8448 -1.2561 14 6 5.1201 7.5673 -2.2384 15 1 4.2522 7.1630 -2.7379 16 6 5.6042 8.8193 -2.5920 17 7 6.6616 9.3122 -1.9829 18 14 4.7537 9.8052 -3.9315 19 1 3.3453 10.0631 -3.5379 20 1 5.4596 11.0982 -4.1183 21 1 4.7798 9.0382 -5.2028 22 6 5.5931 5.1069 0.5531 23 6 3.5311 -0.7573 -0.0063 24 6 4.7322 -1.6675 -0.0143 25 9 4.4115 -2.8568 -0.6775 26 9 5.7914 -1.0360 -0.6751 27 7 2.2827 -1.1357 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9166 2.1170 0.0004 32 1 3.7596 3.2544 -0.0043 33 1 7.1647 4.6354 -1.5010 34 1 5.7073 3.8125 -2.2080 35 1 6.5231 7.2078 -0.8077 36 1 6.9996 10.1872 -2.2298 37 1 4.7555 5.1644 1.2482 38 1 6.4939 5.5872 0.9352 39 1 5.0254 -1.8911 1.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020246296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:24 Heat of formation + Delta-G solvation = -42.234759 kcal Electronic energy + Delta-G solvation = -25757.282644 eV Core-core repulsion = 21565.791755 eV Total energy + Delta-G solvation = -4191.490889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.90810 -47.91758 -42.58548 -40.82223 -39.00241 -35.72355 -34.77333 -34.14887 -32.11092 -31.13896 -29.47194 -26.89630 -26.48237 -26.17007 -24.26019 -23.37860 -21.91570 -21.16621 -20.30260 -19.29767 -18.81656 -18.49680 -17.93604 -17.68545 -17.05697 -16.67765 -16.63349 -16.50147 -15.84863 -15.59857 -15.42659 -15.13447 -14.82644 -14.44790 -14.29805 -14.02587 -13.91686 -13.61311 -13.52034 -13.39372 -13.33110 -13.24749 -12.74891 -12.56387 -12.47206 -12.19242 -12.07766 -11.78630 -11.68410 -11.14732 -10.87061 -10.79386 -10.74709 -10.06662 -9.75597 -8.95065 -7.91895 -5.20062 0.42374 0.66268 1.18828 1.49656 1.52425 1.58287 2.19207 2.38048 2.59115 2.64487 3.06716 3.34711 3.39851 3.73294 3.79968 3.91089 3.93284 3.96341 4.02806 4.17500 4.26063 4.38574 4.39055 4.42952 4.58533 4.72632 4.80966 4.91644 4.97641 5.01787 5.20166 5.27366 5.32704 5.54073 5.72395 5.79599 6.20355 6.30220 6.68593 7.36341 7.37058 8.14271 8.35910 9.31369 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.002815 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.738911 B = 9943.615055 C =10732.816164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.346 5.346 3 C 0.131 3.869 4 C -0.290 4.290 5 C 0.585 3.415 6 O -0.564 6.564 7 N -0.692 5.692 8 C 0.139 3.861 9 H 0.089 0.911 10 C -0.176 4.176 11 C 0.154 3.846 12 H 0.087 0.913 13 N -0.728 5.728 14 C -0.243 4.243 15 H 0.080 0.920 16 C -0.077 4.077 17 N -0.971 5.971 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.299 1.299 21 H -0.281 1.281 22 C -0.139 4.139 23 C 0.033 3.967 24 C 0.348 3.652 25 F -0.205 7.205 26 F -0.181 7.181 27 N -0.287 5.287 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.238 0.762 32 H 0.412 0.588 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.374 0.626 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 -20.362 8.862 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.124 5.124 3 C -0.021 4.021 4 C -0.305 4.305 5 C 0.373 3.627 6 O -0.443 6.443 7 N -0.343 5.343 8 C 0.033 3.967 9 H 0.107 0.893 10 C -0.218 4.218 11 C 0.044 3.956 12 H 0.105 0.895 13 N -0.365 5.365 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.269 4.269 17 N -0.622 5.622 18 Si 0.800 3.200 19 H -0.199 1.199 20 H -0.226 1.226 21 H -0.207 1.207 22 C -0.179 4.179 23 C -0.135 4.135 24 C 0.293 3.707 25 F -0.186 7.186 26 F -0.162 7.162 27 N -0.110 5.110 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.254 0.746 32 H 0.249 0.751 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.206 0.794 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.847 -21.668 8.699 28.219 hybrid contribution 0.563 1.623 -0.969 1.972 sum -15.284 -20.045 7.729 26.366 Atomic orbital electron populations 1.22588 0.69843 1.07398 1.05826 1.48828 1.08877 1.02671 1.52002 1.23806 0.88503 0.95721 0.94111 1.20070 0.94033 0.92159 1.24210 1.17467 0.87798 0.81929 0.75477 1.90850 1.28142 1.73935 1.51370 1.45294 1.09589 1.04604 1.74858 1.21443 0.88571 0.90033 0.96653 0.89290 1.24223 1.01146 0.99315 0.97164 1.22042 0.96470 0.83362 0.93736 0.89466 1.42617 1.34189 1.16611 1.43109 1.19689 1.08633 0.97848 1.11343 0.90214 1.25563 0.99272 0.99320 1.02764 1.69802 1.26985 1.18947 1.46434 0.85249 0.77958 0.77512 0.79272 1.19928 1.22589 1.20732 1.23640 1.03015 0.93519 0.97700 1.22980 0.94147 0.94209 1.02128 1.19773 0.80479 0.75660 0.94788 1.92992 1.93273 1.48214 1.84152 1.93162 1.57133 1.82149 1.83732 1.77118 1.00431 1.09449 1.23982 0.88579 0.88179 0.84964 0.74617 0.75111 0.91564 0.92982 0.79444 0.94103 0.89005 0.89671 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.23 11.44 127.77 1.46 1.69 16 2 N -0.35 -4.53 3.98 -367.77 -1.46 -5.99 16 3 C 0.13 1.61 10.99 84.27 0.93 2.53 16 4 C -0.29 -6.22 6.09 -20.15 -0.12 -6.34 16 5 C 0.59 15.57 7.77 86.67 0.67 16.24 16 6 O -0.56 -19.56 12.89 -4.04 -0.05 -19.61 16 7 N -0.69 -15.53 5.25 -443.29 -2.33 -17.86 16 8 C 0.14 3.90 4.29 45.51 0.20 4.09 16 9 H 0.09 2.72 7.51 -2.39 -0.02 2.70 16 10 C -0.18 -6.08 7.70 31.21 0.24 -5.84 16 11 C 0.15 5.47 4.37 45.61 0.20 5.66 16 12 H 0.09 2.83 8.10 -2.39 -0.02 2.81 16 13 N -0.73 -35.10 5.41 -320.02 -1.73 -36.83 16 14 C -0.24 -12.99 9.97 84.03 0.84 -12.16 16 15 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 16 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 17 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 18 Si 0.97 44.98 29.55 68.60 2.03 47.00 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 C -0.14 -3.91 7.57 31.12 0.24 -3.68 16 23 C 0.03 0.79 6.89 43.52 0.30 1.09 16 24 C 0.35 8.31 5.66 71.24 0.40 8.71 16 25 F -0.20 -5.22 17.27 44.97 0.78 -4.45 16 26 F -0.18 -5.64 13.59 44.97 0.61 -5.03 16 27 N -0.29 -6.13 12.43 -46.67 -0.58 -6.71 16 28 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.24 0.49 7.46 -2.91 -0.02 0.46 16 32 H 0.41 6.27 7.63 -92.70 -0.71 5.56 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.37 19.58 7.93 -92.70 -0.73 18.85 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 2.57 8.12 -2.39 -0.02 2.55 16 39 H 0.16 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -79.64 342.85 3.03 -76.61 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.33 Total: 23.11 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.82 Total: 8.16 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.82 Total: -125.79 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 1.39 Total: -9.48 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.64 3.03 -76.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020246296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.376 kcal (2) G-P(sol) polarization free energy of solvation -79.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds