Wall clock time and date at job start Tue Mar 31 2020 11:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28445 * 125.18804 * 2 1 4 4 C 1.30858 * 110.92898 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.07361 * 180.02562 * 4 3 2 6 6 F 1.39902 * 109.47067 * 119.97416 * 5 4 3 7 7 F 1.39899 * 109.47446 * 239.97958 * 5 4 3 8 8 C 1.39678 * 107.86098 * 359.77501 * 4 3 2 9 9 C 1.36588 * 125.19397 * 180.02562 * 2 1 3 10 10 C 1.47170 * 126.88464 * 359.94656 * 9 2 1 11 11 O 1.21630 * 119.99620 * 5.30532 * 10 9 2 12 12 N 1.34773 * 120.00403 * 185.31190 * 10 9 2 13 13 C 1.46499 * 120.00275 * 185.01669 * 12 10 9 14 14 C 1.53002 * 109.46943 * 179.97438 * 13 12 10 15 15 C 1.53497 * 114.20238 * 175.00160 * 14 13 12 16 16 N 1.47062 * 87.98620 * 87.71595 * 15 14 13 17 17 C 1.36940 * 136.06120 * 207.07871 * 16 15 14 18 18 H 1.07995 * 119.99581 * 354.89264 * 17 16 15 19 19 C 1.38809 * 120.00242 * 174.88701 * 17 16 15 20 20 N 1.31622 * 120.00030 * 184.54693 * 19 17 16 21 21 Si 1.86800 * 119.99789 * 4.55305 * 19 17 16 22 22 H 1.48502 * 109.47132 * 174.35502 * 21 19 17 23 23 H 1.48498 * 109.47107 * 294.34849 * 21 19 17 24 24 H 1.48497 * 109.47507 * 54.35642 * 21 19 17 25 25 C 1.47063 * 87.88527 * 27.34179 * 16 15 14 26 26 H 1.08997 * 109.46807 * 274.80509 * 1 2 3 27 27 H 1.08998 * 109.47212 * 34.80597 * 1 2 3 28 28 H 1.08999 * 109.46612 * 154.80597 * 1 2 3 29 29 H 1.09004 * 109.46605 * 359.97438 * 5 4 3 30 30 H 1.07995 * 127.32051 * 180.26339 * 8 4 3 31 31 H 0.97007 * 119.99424 * 5.01683 * 12 10 9 32 32 H 1.09001 * 109.46794 * 59.99740 * 13 12 10 33 33 H 1.08997 * 109.47089 * 300.00091 * 13 12 10 34 34 H 1.08996 * 113.28344 * 41.93681 * 14 13 12 35 35 H 1.08998 * 113.46896 * 332.93708 * 15 14 13 36 36 H 1.08996 * 113.52045 * 202.50597 * 15 14 13 37 37 H 0.97002 * 119.99817 * 5.01069 * 20 19 17 38 38 H 1.09001 * 113.47259 * 87.43773 * 25 16 15 39 39 H 1.09003 * 113.47205 * 217.87535 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4735 0.7274 -0.0005 5 6 4.6336 1.6894 -0.0002 6 9 5.4135 1.4790 1.1421 7 9 5.4135 1.4799 -1.1425 8 6 3.5613 -0.6666 0.0043 9 6 2.2523 -1.1162 -0.0005 10 6 1.7994 -2.5165 0.0000 11 8 0.6143 -2.7723 -0.0965 12 7 2.6979 -3.5153 0.1074 13 6 2.2603 -4.9091 -0.0024 14 6 3.4673 -5.8363 0.1540 15 6 3.1145 -7.3300 0.1776 16 7 3.2148 -7.3238 -1.2896 17 6 2.6693 -8.0445 -2.3183 18 1 2.0410 -8.8970 -2.1067 19 6 2.9239 -7.6793 -3.6331 20 7 2.3290 -8.3155 -4.6198 21 14 4.1109 -6.2849 -4.0019 22 1 4.3136 -6.1825 -5.4695 23 1 3.5502 -5.0089 -3.4896 24 1 5.4126 -6.5548 -3.3402 25 6 4.1639 -6.2073 -1.1655 26 1 -0.3633 0.0861 1.0240 27 1 -0.3633 0.8438 -0.5866 28 1 -0.3632 -0.9299 -0.4375 29 1 4.2572 2.7124 0.0002 30 1 4.4595 -1.2661 0.0092 31 1 3.6343 -3.3112 0.2575 32 1 1.8027 -5.0704 -0.9784 33 1 1.5326 -5.1242 0.7801 34 1 4.1496 -5.5257 0.9453 35 1 2.1077 -7.5325 0.5430 36 1 3.8706 -7.9480 0.6618 37 1 1.6587 -8.9899 -4.4278 38 1 5.1973 -6.5284 -1.0354 39 1 4.0512 -5.4532 -1.9445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031843790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:03 Heat of formation + Delta-G solvation = 11.749984 kcal Electronic energy + Delta-G solvation = -25913.023425 eV Core-core repulsion = 21723.873490 eV Total energy + Delta-G solvation = -4189.149935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.26866 -47.28065 -43.01399 -39.72243 -38.56703 -34.92891 -33.91450 -32.47802 -31.55918 -29.07730 -28.92353 -26.30978 -25.55586 -25.43694 -23.37032 -21.99216 -21.32683 -20.39450 -19.32852 -18.17614 -17.61831 -17.60681 -17.45518 -16.58261 -16.56217 -16.31605 -15.83813 -15.41549 -15.00026 -14.60882 -14.22925 -14.18480 -13.89699 -13.66174 -13.64588 -13.25869 -13.16803 -13.14274 -12.85496 -12.70296 -11.86153 -11.79068 -11.69345 -11.23670 -11.20288 -10.86734 -10.45427 -10.37936 -10.14929 -9.73625 -9.51024 -9.24122 -9.15621 -8.98825 -8.93435 -7.18271 -6.32200 -3.25448 0.90775 1.82087 1.87871 2.91136 3.00326 3.33953 3.36137 3.41054 3.62674 3.80235 4.06604 4.39155 4.53574 4.57010 4.70791 4.71769 4.83203 4.86997 4.88569 5.01851 5.04950 5.21430 5.34509 5.43555 5.66787 5.79877 5.81943 6.04709 6.16010 6.19096 6.19516 6.27850 6.30302 6.38053 6.75960 7.07373 7.27328 7.48743 7.96550 8.21976 8.95742 9.48042 10.32772 11.19436 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003495 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.779682 B = 8010.244158 C = 8534.020739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.243 5.243 3 N -0.243 5.243 4 C -0.060 4.060 5 C 0.364 3.636 6 F -0.192 7.192 7 F -0.190 7.190 8 C -0.153 4.153 9 C -0.026 4.026 10 C 0.589 3.411 11 O -0.536 6.536 12 N -0.705 5.705 13 C 0.147 3.853 14 C -0.147 4.147 15 C 0.133 3.867 16 N -0.627 5.627 17 C -0.304 4.304 18 H 0.082 0.918 19 C -0.024 4.024 20 N -0.935 5.935 21 Si 1.072 2.928 22 H -0.296 1.296 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.092 3.908 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.169 0.831 31 H 0.403 0.597 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.261 0.739 38 H 0.045 0.955 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 20.723 13.717 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.031 5.031 3 N -0.078 5.078 4 C -0.216 4.216 5 C 0.309 3.691 6 F -0.173 7.173 7 F -0.172 7.172 8 C -0.181 4.181 9 C -0.154 4.154 10 C 0.373 3.627 11 O -0.414 6.414 12 N -0.356 5.356 13 C 0.025 3.975 14 C -0.167 4.167 15 C 0.006 3.994 16 N -0.356 5.356 17 C -0.430 4.430 18 H 0.100 0.900 19 C -0.222 4.222 20 N -0.577 5.577 21 Si 0.906 3.094 22 H -0.223 1.223 23 H -0.220 1.220 24 H -0.217 1.217 25 C -0.033 4.033 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.186 0.814 31 H 0.238 0.762 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.182 22.039 12.179 25.208 hybrid contribution 0.442 -1.615 1.336 2.142 sum 1.623 20.424 13.515 24.544 Atomic orbital electron populations 1.22603 0.71404 1.07171 1.05077 1.45649 1.08236 1.01395 1.47860 1.72978 1.02701 1.14038 1.18127 1.22182 0.92566 0.94512 1.12347 1.19092 0.80442 0.98141 0.71461 1.93034 1.76647 1.96594 1.51053 1.93048 1.76572 1.96587 1.50956 1.22067 0.96371 0.94033 1.05651 1.21519 0.90819 0.90176 1.12865 1.16755 0.85903 0.82697 0.77307 1.90789 1.15974 1.84189 1.50436 1.45751 1.11121 1.06579 1.72126 1.21173 0.96013 0.76650 1.03686 1.23166 0.97248 0.97024 0.99287 1.22268 0.99179 0.91071 0.86871 1.46167 1.48578 1.39643 1.01203 1.20162 1.27473 1.10384 0.84975 0.89987 1.25666 1.03059 1.02984 0.90513 1.70913 1.27726 1.27249 1.31816 0.83691 0.75772 0.75113 0.74854 1.22298 1.22038 1.21692 1.22955 0.93982 0.91850 0.94540 0.89268 0.88510 0.85927 0.85497 0.81357 0.76222 0.89452 0.90875 0.90015 0.93266 0.93943 0.92888 0.93728 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 11.01 59.85 0.66 1.33 16 2 N -0.24 -2.83 3.75 -63.88 -0.24 -3.07 16 3 N -0.24 -2.79 11.90 33.64 0.40 -2.39 16 4 C -0.06 -0.65 6.65 -82.47 -0.55 -1.20 16 5 C 0.36 3.16 5.80 36.01 0.21 3.37 16 6 F -0.19 -1.84 17.32 2.25 0.04 -1.80 16 7 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 8 C -0.15 -1.69 10.44 -38.98 -0.41 -2.10 16 9 C -0.03 -0.32 6.96 -82.06 -0.57 -0.89 16 10 C 0.59 8.33 7.79 -12.64 -0.10 8.24 16 11 O -0.54 -8.94 14.59 5.25 0.08 -8.86 16 12 N -0.71 -9.19 5.54 -61.47 -0.34 -9.53 16 13 C 0.15 2.28 5.52 -4.04 -0.02 2.26 16 14 C -0.15 -2.25 4.17 -89.97 -0.37 -2.63 16 15 C 0.13 2.42 8.25 -8.52 -0.07 2.35 16 16 N -0.63 -14.84 3.53 -184.63 -0.65 -15.49 16 17 C -0.30 -8.65 11.09 -15.06 -0.17 -8.82 16 18 H 0.08 2.47 8.05 -52.49 -0.42 2.04 16 19 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 20 N -0.93 -29.61 13.70 55.49 0.76 -28.85 16 21 Si 1.07 26.84 25.12 -169.99 -4.27 22.57 16 22 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.29 -6.88 6.29 56.52 0.36 -6.52 16 24 H -0.29 -6.75 6.71 56.52 0.38 -6.37 16 25 C 0.09 1.81 5.45 -8.38 -0.05 1.77 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.12 1.25 5.96 -51.93 -0.31 0.94 16 29 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.17 1.46 7.62 -52.49 -0.40 1.06 16 31 H 0.40 4.09 7.55 -40.82 -0.31 3.78 16 32 H 0.09 1.72 7.93 -51.93 -0.41 1.30 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 38 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.06 1.19 4.00 -51.93 -0.21 0.98 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -35.17 336.38 -5.31 -40.48 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.66 Total: 0.91 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.53 Total: 2.88 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.07 Total: -59.32 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.08 Total: -8.86 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.08 Total: -3.71 kcal Atomic # 14 Polarization: 26.84 SS G_CDS: -4.27 Total: 22.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.17 -5.31 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031843790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.227 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds