Wall clock time and date at job start Tue Mar 31 2020 11:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28445 * 125.18804 * 2 1 4 4 C 1.30858 * 110.92898 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.07361 * 180.02562 * 4 3 2 6 6 F 1.39902 * 109.47067 * 119.97416 * 5 4 3 7 7 F 1.39899 * 109.47446 * 239.97958 * 5 4 3 8 8 C 1.39678 * 107.86098 * 359.77501 * 4 3 2 9 9 C 1.36588 * 125.19397 * 180.02562 * 2 1 3 10 10 C 1.47170 * 126.88464 * 359.94656 * 9 2 1 11 11 O 1.21630 * 119.99620 * 5.30532 * 10 9 2 12 12 N 1.34773 * 120.00403 * 185.31190 * 10 9 2 13 13 C 1.46499 * 120.00275 * 185.01669 * 12 10 9 14 14 C 1.53002 * 109.46943 * 179.97438 * 13 12 10 15 15 C 1.53497 * 114.20238 * 175.00160 * 14 13 12 16 16 N 1.47062 * 87.98620 * 87.71595 * 15 14 13 17 17 C 1.36940 * 136.06120 * 207.07871 * 16 15 14 18 18 H 1.07995 * 119.99581 * 354.89264 * 17 16 15 19 19 C 1.38809 * 120.00242 * 174.88701 * 17 16 15 20 20 N 1.31622 * 120.00030 * 184.54693 * 19 17 16 21 21 Si 1.86800 * 119.99789 * 4.55305 * 19 17 16 22 22 H 1.48502 * 109.47132 * 174.35502 * 21 19 17 23 23 H 1.48498 * 109.47107 * 294.34849 * 21 19 17 24 24 H 1.48497 * 109.47507 * 54.35642 * 21 19 17 25 25 C 1.47063 * 87.88527 * 27.34179 * 16 15 14 26 26 H 1.08997 * 109.46807 * 274.80509 * 1 2 3 27 27 H 1.08998 * 109.47212 * 34.80597 * 1 2 3 28 28 H 1.08999 * 109.46612 * 154.80597 * 1 2 3 29 29 H 1.09004 * 109.46605 * 359.97438 * 5 4 3 30 30 H 1.07995 * 127.32051 * 180.26339 * 8 4 3 31 31 H 0.97007 * 119.99424 * 5.01683 * 12 10 9 32 32 H 1.09001 * 109.46794 * 59.99740 * 13 12 10 33 33 H 1.08997 * 109.47089 * 300.00091 * 13 12 10 34 34 H 1.08996 * 113.28344 * 41.93681 * 14 13 12 35 35 H 1.08998 * 113.46896 * 332.93708 * 15 14 13 36 36 H 1.08996 * 113.52045 * 202.50597 * 15 14 13 37 37 H 0.97002 * 119.99817 * 5.01069 * 20 19 17 38 38 H 1.09001 * 113.47259 * 87.43773 * 25 16 15 39 39 H 1.09003 * 113.47205 * 217.87535 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4735 0.7274 -0.0005 5 6 4.6336 1.6894 -0.0002 6 9 5.4135 1.4790 1.1421 7 9 5.4135 1.4799 -1.1425 8 6 3.5613 -0.6666 0.0043 9 6 2.2523 -1.1162 -0.0005 10 6 1.7994 -2.5165 0.0000 11 8 0.6143 -2.7723 -0.0965 12 7 2.6979 -3.5153 0.1074 13 6 2.2603 -4.9091 -0.0024 14 6 3.4673 -5.8363 0.1540 15 6 3.1145 -7.3300 0.1776 16 7 3.2148 -7.3238 -1.2896 17 6 2.6693 -8.0445 -2.3183 18 1 2.0410 -8.8970 -2.1067 19 6 2.9239 -7.6793 -3.6331 20 7 2.3290 -8.3155 -4.6198 21 14 4.1109 -6.2849 -4.0019 22 1 4.3136 -6.1825 -5.4695 23 1 3.5502 -5.0089 -3.4896 24 1 5.4126 -6.5548 -3.3402 25 6 4.1639 -6.2073 -1.1655 26 1 -0.3633 0.0861 1.0240 27 1 -0.3633 0.8438 -0.5866 28 1 -0.3632 -0.9299 -0.4375 29 1 4.2572 2.7124 0.0002 30 1 4.4595 -1.2661 0.0092 31 1 3.6343 -3.3112 0.2575 32 1 1.8027 -5.0704 -0.9784 33 1 1.5326 -5.1242 0.7801 34 1 4.1496 -5.5257 0.9453 35 1 2.1077 -7.5325 0.5430 36 1 3.8706 -7.9480 0.6618 37 1 1.6587 -8.9899 -4.4278 38 1 5.1973 -6.5284 -1.0354 39 1 4.0512 -5.4532 -1.9445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031843790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:03 Heat of formation + Delta-G solvation = -14.989573 kcal Electronic energy + Delta-G solvation = -25914.182939 eV Core-core repulsion = 21723.873490 eV Total energy + Delta-G solvation = -4190.309449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.96115 -47.97984 -43.85533 -40.96499 -39.96482 -36.09322 -34.82717 -34.50409 -32.56671 -30.60410 -29.71945 -27.81389 -26.96792 -26.30400 -24.51628 -23.55617 -22.26683 -21.48152 -20.67314 -19.59185 -19.06536 -18.33293 -18.29601 -17.53227 -17.43107 -17.22950 -17.10161 -16.91935 -16.29619 -15.79192 -15.72368 -15.14850 -15.06907 -14.89314 -14.81175 -14.35096 -14.22478 -13.95937 -13.81726 -13.46298 -13.39924 -13.21507 -13.04279 -12.62474 -12.38875 -12.21963 -11.99478 -11.91755 -11.35356 -11.26231 -11.03032 -10.84507 -10.63334 -10.35399 -10.15912 -9.17078 -8.63027 -5.45563 -0.01387 1.00559 1.07482 1.34407 1.45840 1.65301 1.90115 1.99909 2.53575 2.58058 3.06409 3.19237 3.19956 3.23508 3.45013 3.59318 3.81058 3.88805 4.02953 4.05508 4.23963 4.30318 4.40275 4.44377 4.50020 4.61320 4.67207 4.71876 4.75264 4.85640 4.94658 5.02759 5.16800 5.24840 5.37808 5.45422 5.96711 6.27573 6.63754 6.71652 6.94487 7.34727 8.29008 8.91627 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003495 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.779682 B = 8010.244158 C = 8534.020739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.249 5.249 3 N -0.245 5.245 4 C -0.070 4.070 5 C 0.367 3.633 6 F -0.197 7.197 7 F -0.200 7.200 8 C -0.148 4.148 9 C -0.046 4.046 10 C 0.589 3.411 11 O -0.569 6.569 12 N -0.694 5.694 13 C 0.154 3.846 14 C -0.111 4.111 15 C 0.127 3.873 16 N -0.664 5.664 17 C -0.285 4.285 18 H 0.047 0.953 19 C -0.089 4.089 20 N -0.977 5.977 21 Si 1.112 2.888 22 H -0.311 1.311 23 H -0.273 1.273 24 H -0.257 1.257 25 C 0.082 3.918 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.192 0.808 31 H 0.420 0.580 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.245 0.755 38 H 0.067 0.933 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 23.265 16.105 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.038 5.038 3 N -0.081 5.081 4 C -0.226 4.226 5 C 0.312 3.688 6 F -0.178 7.178 7 F -0.181 7.181 8 C -0.177 4.177 9 C -0.174 4.174 10 C 0.374 3.626 11 O -0.449 6.449 12 N -0.345 5.345 13 C 0.031 3.969 14 C -0.130 4.130 15 C 0.002 3.998 16 N -0.394 5.394 17 C -0.413 4.413 18 H 0.065 0.935 19 C -0.280 4.280 20 N -0.623 5.623 21 Si 0.939 3.061 22 H -0.240 1.240 23 H -0.201 1.201 24 H -0.182 1.182 25 C -0.042 4.042 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.123 0.877 29 H 0.178 0.822 30 H 0.209 0.791 31 H 0.258 0.742 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.157 0.843 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.438 24.597 14.655 28.837 hybrid contribution -0.322 -2.430 0.721 2.555 sum 3.116 22.167 15.375 27.156 Atomic orbital electron populations 1.22739 0.70327 1.07102 1.06415 1.45936 1.09048 1.01209 1.47579 1.72972 1.03102 1.13978 1.18043 1.22600 0.92972 0.95018 1.11980 1.19376 0.79502 0.99123 0.70827 1.93024 1.76746 1.96695 1.51323 1.93030 1.76801 1.96707 1.51546 1.22437 0.96515 0.94489 1.04222 1.21364 0.91683 0.89517 1.14796 1.16994 0.85512 0.83547 0.76524 1.90780 1.17443 1.84808 1.51883 1.45532 1.11938 1.05333 1.71735 1.20906 0.96419 0.78220 1.01394 1.22938 0.96900 0.94835 0.98324 1.22577 1.00024 0.93677 0.83564 1.46274 1.50121 1.40211 1.02781 1.20021 1.25725 1.08808 0.86733 0.93492 1.26994 1.04874 1.05255 0.90844 1.71016 1.29395 1.28870 1.33026 0.83240 0.75454 0.73323 0.74057 1.23957 1.20058 1.18228 1.23237 0.94537 0.89994 0.96437 0.87622 0.86448 0.87702 0.82203 0.79098 0.74208 0.94128 0.90150 0.84327 0.93438 0.91386 0.94608 0.91510 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 11.01 127.77 1.41 2.59 16 2 N -0.25 -5.38 3.75 -356.01 -1.33 -6.71 16 3 N -0.24 -5.07 11.90 -47.49 -0.57 -5.64 16 4 C -0.07 -1.33 6.65 43.05 0.29 -1.05 16 5 C 0.37 5.28 5.80 71.24 0.41 5.69 16 6 F -0.20 -3.20 17.32 44.97 0.78 -2.42 16 7 F -0.20 -3.56 17.32 44.97 0.78 -2.78 16 8 C -0.15 -2.86 10.44 22.66 0.24 -2.62 16 9 C -0.05 -1.06 6.96 40.79 0.28 -0.78 16 10 C 0.59 15.81 7.79 86.59 0.67 16.49 16 11 O -0.57 -18.89 14.59 -4.12 -0.06 -18.95 16 12 N -0.69 -16.15 5.54 -466.63 -2.58 -18.73 16 13 C 0.15 4.45 5.52 86.38 0.48 4.92 16 14 C -0.11 -2.91 4.17 -10.37 -0.04 -2.96 16 15 C 0.13 4.25 8.25 83.17 0.69 4.93 16 16 N -0.66 -30.61 3.53 -738.04 -2.61 -33.22 16 17 C -0.28 -16.61 11.09 84.03 0.93 -15.68 16 18 H 0.05 2.98 8.05 -2.91 -0.02 2.95 16 19 C -0.09 -5.38 5.50 84.86 0.47 -4.91 16 20 N -0.98 -64.61 13.70 21.65 0.30 -64.31 16 21 Si 1.11 54.14 25.12 68.60 1.72 55.87 16 22 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 23 H -0.27 -12.28 6.29 99.48 0.63 -11.66 16 24 H -0.26 -11.01 6.71 99.48 0.67 -10.34 16 25 C 0.08 2.94 5.45 83.26 0.45 3.40 16 26 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 2.13 5.96 -2.39 -0.01 2.12 16 29 H 0.16 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.19 2.58 7.62 -2.91 -0.02 2.55 16 31 H 0.42 6.74 7.55 -92.70 -0.70 6.04 16 32 H 0.04 1.58 7.93 -2.39 -0.02 1.56 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.14 2.25 8.14 -2.39 -0.02 2.24 16 35 H 0.05 1.59 8.12 -2.39 -0.02 1.58 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.24 16.28 8.73 -92.71 -0.81 15.47 16 38 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 39 H 0.05 1.75 4.00 -2.39 -0.01 1.74 16 Total: -1.00 -80.41 336.38 2.95 -77.46 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.25 Total: 9.41 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.27 Total: 10.02 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -6.79 Total: -128.61 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.06 Total: -18.95 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.56 Total: -5.20 kcal Atomic # 14 Polarization: 54.14 SS G_CDS: 1.72 Total: 55.87 kcal Total: -80.41 2.95 -77.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031843790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.475 kcal (2) G-P(sol) polarization free energy of solvation -80.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds