Wall clock time and date at job start Tue Mar 31 2020 11:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99824 * 2 1 4 4 O 1.21574 * 120.00145 * 185.38992 * 3 2 1 5 5 C 1.47709 * 120.00053 * 5.39299 * 3 2 1 6 6 C 1.41506 * 126.52115 * 186.49193 * 5 3 2 7 7 C 1.35361 * 105.50574 * 179.97438 * 6 5 3 8 8 N 1.35034 * 107.22878 * 0.02562 * 7 6 5 9 9 C 1.46504 * 124.88340 * 179.97438 * 8 7 6 10 10 F 1.39900 * 109.46921 * 209.99787 * 9 8 7 11 11 F 1.39892 * 109.46959 * 329.99714 * 9 8 7 12 12 N 1.28470 * 110.22808 * 359.72027 * 8 7 6 13 13 C 1.46497 * 120.00045 * 179.97438 * 2 1 3 14 14 H 1.08998 * 110.64148 * 178.31312 * 13 2 1 15 15 C 1.55164 * 110.72012 * 54.98012 * 13 2 1 16 16 C 1.55130 * 101.48162 * 205.96988 * 15 13 2 17 17 N 1.47418 * 104.72613 * 37.29229 * 16 15 13 18 18 C 1.36940 * 125.64928 * 155.81434 * 17 16 15 19 19 H 1.07995 * 120.00423 * 193.85843 * 18 17 16 20 20 C 1.38814 * 119.99642 * 13.86528 * 18 17 16 21 21 N 1.31623 * 120.00360 * 28.03861 * 20 18 17 22 22 Si 1.86794 * 119.99767 * 208.03378 * 20 18 17 23 23 H 1.48500 * 109.47265 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47379 * 299.99897 * 22 20 18 25 25 H 1.48502 * 109.47235 * 60.00172 * 22 20 18 26 26 C 1.47019 * 108.70572 * 335.55356 * 17 16 15 27 27 H 1.08997 * 109.47569 * 274.76839 * 1 2 3 28 28 H 1.09000 * 109.47389 * 34.77273 * 1 2 3 29 29 H 1.09009 * 109.46982 * 154.77065 * 1 2 3 30 30 H 1.07998 * 127.24570 * 0.02562 * 6 5 3 31 31 H 1.07998 * 126.38523 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.46991 * 90.00084 * 9 8 7 33 33 H 1.08996 * 111.00142 * 324.20734 * 15 13 2 34 34 H 1.08997 * 111.00259 * 88.02404 * 15 13 2 35 35 H 1.09006 * 110.49210 * 278.45001 * 16 15 13 36 36 H 1.08997 * 110.34111 * 156.06058 * 16 15 13 37 37 H 0.97002 * 119.99616 * 6.20968 * 21 20 18 38 38 H 1.08998 * 109.88370 * 120.70173 * 26 17 16 39 39 H 1.09001 * 109.88390 * 241.87395 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1696 -0.0989 5 6 1.4052 2.4435 0.1202 6 6 1.9528 3.7435 0.0077 7 6 0.9128 4.5911 0.1872 8 7 -0.1873 3.8360 0.3948 9 6 -1.5329 4.3637 0.6338 10 9 -2.2463 3.4728 1.4428 11 9 -1.4405 5.6038 1.2746 12 7 0.1149 2.5882 0.3473 13 6 2.1975 -1.2687 0.0006 14 1 3.2726 -1.0917 -0.0295 15 6 1.7508 -2.1611 -1.1876 16 6 2.0692 -3.5792 -0.6454 17 7 1.7325 -3.5166 0.7884 18 6 1.4004 -4.5853 1.5777 19 1 0.9561 -4.4224 2.5484 20 6 1.6350 -5.8781 1.1299 21 7 2.6139 -6.1136 0.2821 22 14 0.5616 -7.2838 1.7308 23 1 1.0144 -8.5536 1.1082 24 1 0.6674 -7.3910 3.2081 25 1 -0.8510 -7.0242 1.3533 26 6 1.8182 -2.1177 1.2322 27 1 -0.3634 0.0854 1.0241 28 1 -0.3634 0.8441 -0.5861 29 1 -0.3633 -0.9297 -0.4381 30 1 2.9834 4.0044 -0.1824 31 1 0.9551 5.6701 0.1689 32 1 -2.0503 4.4841 -0.3180 33 1 0.6851 -2.0446 -1.3845 34 1 2.3370 -1.9447 -2.0807 35 1 3.1265 -3.8096 -0.7771 36 1 1.4523 -4.3243 -1.1478 37 1 3.2271 -5.4022 0.0397 38 1 0.8541 -1.7931 1.6235 39 1 2.5849 -2.0189 2.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033109918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:23 Heat of formation + Delta-G solvation = 3.703559 kcal Electronic energy + Delta-G solvation = -26298.011454 eV Core-core repulsion = 22108.512600 eV Total energy + Delta-G solvation = -4189.498854 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.96025 -48.05717 -43.01146 -39.71881 -37.46826 -34.97313 -33.33467 -32.21625 -31.12685 -29.18508 -27.96262 -27.10500 -26.33237 -24.40359 -23.22921 -22.03298 -20.44832 -20.23158 -19.29099 -18.88327 -18.71416 -17.88043 -17.53697 -17.13568 -16.24221 -15.96415 -15.00983 -14.83696 -14.72536 -14.45413 -14.33671 -14.17219 -13.88517 -13.77029 -13.57506 -13.17285 -13.00743 -12.84521 -12.79041 -12.34517 -12.20933 -11.58636 -11.06688 -11.01117 -10.73509 -10.68299 -10.47382 -10.07864 -10.00307 -9.95851 -9.79913 -9.61231 -9.50797 -8.44220 -8.36333 -6.93441 -6.06917 -3.09790 1.09731 1.34290 1.76137 2.86200 3.02726 3.28599 3.37910 3.52743 3.56462 3.74504 3.79764 4.25179 4.29064 4.62885 4.74114 5.19038 5.24930 5.25734 5.36102 5.38513 5.44620 5.57932 5.67924 5.71112 5.86367 6.01798 6.06134 6.10408 6.17044 6.39027 6.50389 6.63492 6.87724 6.97850 7.04786 7.32030 7.52362 7.79864 8.19326 8.50662 9.04586 9.84295 10.37968 11.26155 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.003023 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.360776 B = 9260.932788 C =10143.804563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.586 5.586 3 C 0.597 3.403 4 O -0.533 6.533 5 C 0.014 3.986 6 C -0.167 4.167 7 C -0.004 4.004 8 N -0.357 5.357 9 C 0.505 3.495 10 F -0.165 7.165 11 F -0.175 7.175 12 N -0.240 5.240 13 C 0.127 3.873 14 H 0.107 0.893 15 C -0.144 4.144 16 C 0.146 3.854 17 N -0.602 5.602 18 C -0.336 4.336 19 H 0.066 0.934 20 C -0.026 4.026 21 N -0.919 5.919 22 Si 1.064 2.936 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.130 3.870 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.171 0.829 31 H 0.189 0.811 32 H 0.164 0.836 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.269 0.731 38 H 0.032 0.968 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 25.338 -3.679 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.317 5.317 3 C 0.383 3.617 4 O -0.408 6.408 5 C -0.149 4.149 6 C -0.195 4.195 7 C -0.144 4.144 8 N -0.154 5.154 9 C 0.372 3.628 10 F -0.146 7.146 11 F -0.157 7.157 12 N -0.074 5.074 13 C 0.024 3.976 14 H 0.125 0.875 15 C -0.184 4.184 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.463 4.463 19 H 0.084 0.916 20 C -0.227 4.227 21 N -0.560 5.560 22 Si 0.894 3.106 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.188 0.812 31 H 0.206 0.794 32 H 0.180 0.820 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.796 23.094 -3.571 25.338 hybrid contribution 0.870 2.299 0.456 2.500 sum -8.926 25.392 -3.115 27.095 Atomic orbital electron populations 1.21936 0.78654 1.02964 1.02539 1.47699 1.07664 1.05350 1.70945 1.16902 0.86113 0.81568 0.77142 1.90796 1.12852 1.86397 1.50730 1.22255 0.89663 0.95759 1.07234 1.21911 1.00653 0.90192 1.06734 1.22860 0.85345 0.99558 1.06625 1.46888 1.09180 1.05256 1.54102 1.21482 0.77490 0.72376 0.91465 1.93176 1.76720 1.68665 1.76084 1.93145 1.95575 1.42266 1.84684 1.73915 1.16693 0.98241 1.18505 1.22286 0.97255 0.81163 0.96908 0.87513 1.23250 1.01203 0.97173 0.96734 1.21574 0.98219 0.92734 0.85436 1.44522 1.82042 1.01626 1.04759 1.19758 1.38791 0.85604 1.02178 0.91573 1.25726 0.99335 0.97700 0.99949 1.70783 1.12957 1.35402 1.36848 0.83534 0.75663 0.76123 0.75283 1.21086 1.22057 1.22148 1.21549 0.98321 0.86050 0.93759 0.92244 0.90382 0.90460 0.81191 0.79370 0.81969 0.91077 0.91405 0.95333 0.92533 0.91909 0.95053 0.95548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 8.09 59.85 0.48 1.64 16 2 N -0.59 -9.67 2.88 -172.99 -0.50 -10.16 16 3 C 0.60 9.92 7.67 -12.39 -0.10 9.83 16 4 O -0.53 -10.25 16.31 5.30 0.09 -10.16 16 5 C 0.01 0.19 6.75 -82.77 -0.56 -0.37 16 6 C -0.17 -1.76 10.81 -39.36 -0.43 -2.18 16 7 C 0.00 -0.03 10.98 -17.17 -0.19 -0.22 16 8 N -0.36 -3.14 3.68 -66.62 -0.24 -3.39 16 9 C 0.50 2.76 6.56 59.85 0.39 3.16 16 10 F -0.17 -1.38 17.26 2.25 0.04 -1.34 16 11 F -0.18 -0.99 16.96 2.25 0.04 -0.95 16 12 N -0.24 -2.88 8.50 33.42 0.28 -2.59 16 13 C 0.13 2.41 3.36 -66.09 -0.22 2.19 16 14 H 0.11 2.15 7.00 -51.93 -0.36 1.79 16 15 C -0.14 -2.69 6.61 -24.46 -0.16 -2.85 16 16 C 0.15 3.45 5.25 -2.41 -0.01 3.44 16 17 N -0.60 -15.65 3.32 -169.94 -0.56 -16.21 16 18 C -0.34 -9.67 10.04 -15.06 -0.15 -9.83 16 19 H 0.07 1.90 7.97 -52.49 -0.42 1.48 16 20 C -0.03 -0.74 5.08 -17.43 -0.09 -0.83 16 21 N -0.92 -28.10 12.84 55.49 0.71 -27.39 16 22 Si 1.06 25.64 30.00 -169.99 -5.10 20.54 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 C 0.13 2.88 6.88 -3.06 -0.02 2.85 16 27 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 28 H 0.08 0.97 5.91 -51.93 -0.31 0.67 16 29 H 0.08 1.10 6.12 -51.92 -0.32 0.79 16 30 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.16 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.07 1.24 6.13 -51.93 -0.32 0.92 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.72 6.85 -51.93 -0.36 0.36 16 36 H 0.06 1.44 7.78 -51.93 -0.40 1.04 16 37 H 0.27 8.26 5.95 -40.82 -0.24 8.01 16 38 H 0.03 0.68 7.05 -51.93 -0.37 0.32 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -35.58 330.49 -5.74 -41.32 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.42 Total: -1.46 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -1.05 Total: 6.82 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.31 Total: -59.74 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.08 Total: -2.29 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.10 Total: 20.54 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.58 -5.74 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.019 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds