Wall clock time and date at job start Tue Mar 31 2020 11:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 119.99824 * 2 1 4 4 O 1.21574 * 120.00145 * 185.38992 * 3 2 1 5 5 C 1.47709 * 120.00053 * 5.39299 * 3 2 1 6 6 C 1.41506 * 126.52115 * 186.49193 * 5 3 2 7 7 C 1.35361 * 105.50574 * 179.97438 * 6 5 3 8 8 N 1.35034 * 107.22878 * 0.02562 * 7 6 5 9 9 C 1.46504 * 124.88340 * 179.97438 * 8 7 6 10 10 F 1.39900 * 109.46921 * 209.99787 * 9 8 7 11 11 F 1.39892 * 109.46959 * 329.99714 * 9 8 7 12 12 N 1.28470 * 110.22808 * 359.72027 * 8 7 6 13 13 C 1.46497 * 120.00045 * 179.97438 * 2 1 3 14 14 H 1.08998 * 110.64148 * 178.31312 * 13 2 1 15 15 C 1.55164 * 110.72012 * 54.98012 * 13 2 1 16 16 C 1.55130 * 101.48162 * 205.96988 * 15 13 2 17 17 N 1.47418 * 104.72613 * 37.29229 * 16 15 13 18 18 C 1.36940 * 125.64928 * 155.81434 * 17 16 15 19 19 H 1.07995 * 120.00423 * 193.85843 * 18 17 16 20 20 C 1.38814 * 119.99642 * 13.86528 * 18 17 16 21 21 N 1.31623 * 120.00360 * 28.03861 * 20 18 17 22 22 Si 1.86794 * 119.99767 * 208.03378 * 20 18 17 23 23 H 1.48500 * 109.47265 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47379 * 299.99897 * 22 20 18 25 25 H 1.48502 * 109.47235 * 60.00172 * 22 20 18 26 26 C 1.47019 * 108.70572 * 335.55356 * 17 16 15 27 27 H 1.08997 * 109.47569 * 274.76839 * 1 2 3 28 28 H 1.09000 * 109.47389 * 34.77273 * 1 2 3 29 29 H 1.09009 * 109.46982 * 154.77065 * 1 2 3 30 30 H 1.07998 * 127.24570 * 0.02562 * 6 5 3 31 31 H 1.07998 * 126.38523 * 179.97438 * 7 6 5 32 32 H 1.08997 * 109.46991 * 90.00084 * 9 8 7 33 33 H 1.08996 * 111.00142 * 324.20734 * 15 13 2 34 34 H 1.08997 * 111.00259 * 88.02404 * 15 13 2 35 35 H 1.09006 * 110.49210 * 278.45001 * 16 15 13 36 36 H 1.08997 * 110.34111 * 156.06058 * 16 15 13 37 37 H 0.97002 * 119.99616 * 6.20968 * 21 20 18 38 38 H 1.08998 * 109.88370 * 120.70173 * 26 17 16 39 39 H 1.09001 * 109.88390 * 241.87395 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3506 1.1696 -0.0989 5 6 1.4052 2.4435 0.1202 6 6 1.9528 3.7435 0.0077 7 6 0.9128 4.5911 0.1872 8 7 -0.1873 3.8360 0.3948 9 6 -1.5329 4.3637 0.6338 10 9 -2.2463 3.4728 1.4428 11 9 -1.4405 5.6038 1.2746 12 7 0.1149 2.5882 0.3473 13 6 2.1975 -1.2687 0.0006 14 1 3.2726 -1.0917 -0.0295 15 6 1.7508 -2.1611 -1.1876 16 6 2.0692 -3.5792 -0.6454 17 7 1.7325 -3.5166 0.7884 18 6 1.4004 -4.5853 1.5777 19 1 0.9561 -4.4224 2.5484 20 6 1.6350 -5.8781 1.1299 21 7 2.6139 -6.1136 0.2821 22 14 0.5616 -7.2838 1.7308 23 1 1.0144 -8.5536 1.1082 24 1 0.6674 -7.3910 3.2081 25 1 -0.8510 -7.0242 1.3533 26 6 1.8182 -2.1177 1.2322 27 1 -0.3634 0.0854 1.0241 28 1 -0.3634 0.8441 -0.5861 29 1 -0.3633 -0.9297 -0.4381 30 1 2.9834 4.0044 -0.1824 31 1 0.9551 5.6701 0.1689 32 1 -2.0503 4.4841 -0.3180 33 1 0.6851 -2.0446 -1.3845 34 1 2.3370 -1.9447 -2.0807 35 1 3.1265 -3.8096 -0.7771 36 1 1.4523 -4.3243 -1.1478 37 1 3.2271 -5.4022 0.0397 38 1 0.8541 -1.7931 1.6235 39 1 2.5849 -2.0189 2.0008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033109918.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:22 Heat of formation + Delta-G solvation = -20.497654 kcal Electronic energy + Delta-G solvation = -26299.060898 eV Core-core repulsion = 22108.512600 eV Total energy + Delta-G solvation = -4190.548298 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.41488 -48.53211 -43.78711 -41.10603 -39.14526 -36.53053 -34.48604 -33.76493 -31.96299 -31.06390 -29.53441 -28.11656 -27.47241 -26.30704 -24.33353 -22.72358 -22.19484 -21.73242 -20.35439 -19.66964 -19.63596 -19.26037 -18.49771 -18.21155 -17.57095 -16.90516 -16.31509 -16.14253 -15.76598 -15.61757 -15.37250 -15.25607 -15.12810 -14.90466 -14.75338 -14.43206 -14.34130 -14.20119 -13.83052 -13.58883 -13.34269 -13.20462 -12.63900 -12.59528 -12.51171 -12.45726 -11.99502 -11.88709 -11.68876 -11.60644 -11.34212 -10.63529 -10.56040 -10.33960 -9.78940 -9.09075 -8.35829 -5.35967 0.22651 0.71373 1.00438 1.58115 1.66165 1.75516 1.85991 2.15021 2.54517 2.64165 2.76547 3.15939 3.31747 3.51197 3.52232 3.64353 3.72902 3.77891 3.99129 4.07046 4.18276 4.31895 4.41593 4.53663 4.56858 4.63306 4.72512 4.83652 4.88831 4.94555 5.01017 5.11216 5.20029 5.40924 5.46760 5.61757 6.18784 6.27457 6.53302 6.83919 6.93460 7.66295 8.22318 8.96667 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.003023 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.360776 B = 9260.932788 C =10143.804563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.587 5.587 3 C 0.595 3.405 4 O -0.568 6.568 5 C -0.017 4.017 6 C -0.187 4.187 7 C 0.024 3.976 8 N -0.353 5.353 9 C 0.500 3.500 10 F -0.184 7.184 11 F -0.174 7.174 12 N -0.252 5.252 13 C 0.142 3.858 14 H 0.092 0.908 15 C -0.123 4.123 16 C 0.150 3.850 17 N -0.622 5.622 18 C -0.350 4.350 19 H 0.061 0.939 20 C -0.076 4.076 21 N -0.945 5.945 22 Si 1.119 2.881 23 H -0.290 1.290 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.131 3.869 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.175 0.825 31 H 0.234 0.766 32 H 0.219 0.781 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.007 0.993 36 H 0.033 0.967 37 H 0.256 0.744 38 H 0.039 0.961 39 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 27.836 -4.062 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.318 5.318 3 C 0.383 3.617 4 O -0.446 6.446 5 C -0.178 4.178 6 C -0.214 4.214 7 C -0.116 4.116 8 N -0.150 5.150 9 C 0.369 3.631 10 F -0.165 7.165 11 F -0.155 7.155 12 N -0.087 5.087 13 C 0.038 3.962 14 H 0.111 0.889 15 C -0.162 4.162 16 C 0.024 3.976 17 N -0.349 5.349 18 C -0.479 4.479 19 H 0.079 0.921 20 C -0.272 4.272 21 N -0.587 5.587 22 Si 0.943 3.057 23 H -0.216 1.216 24 H -0.202 1.202 25 H -0.203 1.203 26 C 0.005 3.995 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.250 0.750 32 H 0.235 0.765 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -12.108 25.640 -3.945 28.628 hybrid contribution 1.558 1.686 0.643 2.385 sum -10.549 27.326 -3.302 29.478 Atomic orbital electron populations 1.22005 0.76947 1.03735 1.02721 1.47683 1.08526 1.04426 1.71156 1.17350 0.85919 0.82476 0.75953 1.90763 1.14499 1.87101 1.52252 1.21865 0.90661 0.95078 1.10167 1.22111 1.01912 0.89473 1.07931 1.23440 0.83783 1.01019 1.03376 1.47318 1.10807 1.04521 1.52400 1.22428 0.76014 0.71571 0.93076 1.93142 1.76957 1.69490 1.76953 1.93152 1.95396 1.42005 1.84986 1.73785 1.15902 1.00160 1.18895 1.21856 0.96854 0.82172 0.95356 0.88947 1.23105 1.02721 0.93345 0.97045 1.21478 0.96389 0.95222 0.84515 1.44777 1.81935 1.02477 1.05736 1.20041 1.38417 0.86849 1.02550 0.92065 1.27221 0.99691 1.00480 0.99803 1.70901 1.14119 1.35026 1.38694 0.82817 0.74491 0.72711 0.75714 1.21612 1.20186 1.20314 1.21589 0.98015 0.85013 0.94865 0.92591 0.88346 0.90593 0.80764 0.74998 0.76530 0.89273 0.89098 0.97477 0.94865 0.93390 0.94265 0.97409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.36 8.09 127.77 1.03 3.39 16 2 N -0.59 -19.20 2.88 -819.49 -2.36 -21.57 16 3 C 0.60 19.78 7.67 86.75 0.67 20.44 16 4 O -0.57 -22.37 16.31 -3.95 -0.06 -22.44 16 5 C -0.02 -0.43 6.75 42.46 0.29 -0.14 16 6 C -0.19 -3.57 10.81 22.41 0.24 -3.33 16 7 C 0.02 0.28 10.98 83.54 0.92 1.19 16 8 N -0.35 -4.99 3.68 -364.70 -1.34 -6.33 16 9 C 0.50 3.48 6.56 127.77 0.84 4.32 16 10 F -0.18 -2.57 17.26 44.97 0.78 -1.80 16 11 F -0.17 -1.27 16.96 44.97 0.76 -0.50 16 12 N -0.25 -5.50 8.50 -48.18 -0.41 -5.91 16 13 C 0.14 5.46 3.36 46.18 0.16 5.62 16 14 H 0.09 3.85 7.00 -2.39 -0.02 3.83 16 15 C -0.12 -4.55 6.61 32.07 0.21 -4.34 16 16 C 0.15 7.29 5.25 86.93 0.46 7.74 16 17 N -0.62 -33.22 3.32 -691.56 -2.30 -35.52 16 18 C -0.35 -20.61 10.04 84.03 0.84 -19.77 16 19 H 0.06 3.58 7.97 -2.91 -0.02 3.55 16 20 C -0.08 -4.48 5.08 84.86 0.43 -4.05 16 21 N -0.94 -59.40 12.84 21.65 0.28 -59.12 16 22 Si 1.12 51.97 30.00 68.60 2.06 54.03 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.13 5.97 6.88 86.73 0.60 6.56 16 27 H 0.06 1.54 8.06 -2.39 -0.02 1.52 16 28 H 0.10 2.26 5.91 -2.39 -0.01 2.24 16 29 H 0.08 2.05 6.12 -2.38 -0.01 2.04 16 30 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.23 0.48 8.06 -2.91 -0.02 0.45 16 32 H 0.22 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.09 2.99 6.13 -2.39 -0.01 2.98 16 34 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.01 0.39 6.85 -2.38 -0.02 0.37 16 36 H 0.03 1.75 7.78 -2.39 -0.02 1.73 16 37 H 0.26 16.37 5.95 -92.71 -0.55 15.81 16 38 H 0.04 1.72 7.05 -2.39 -0.02 1.70 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -80.64 330.49 5.39 -75.25 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.31 Total: 6.28 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 6.68 Total: 17.63 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -6.13 Total: -128.45 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 1.54 Total: -2.30 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.06 Total: 54.03 kcal Total: -80.64 5.39 -75.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033109918.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.748 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds