Wall clock time and date at job start Tue Mar 31 2020 11:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00006 * 2 1 4 4 O 1.21578 * 120.00162 * 183.33247 * 3 2 1 5 5 C 1.47715 * 119.99900 * 3.05907 * 3 2 1 6 6 C 1.41498 * 126.51691 * 173.85761 * 5 3 2 7 7 C 1.35366 * 105.50317 * 179.88015 * 6 5 3 8 8 C 1.50699 * 126.38603 * 180.15367 * 7 6 5 9 9 F 1.39905 * 109.47049 * 210.29597 * 8 7 6 10 10 F 1.39896 * 109.47079 * 330.29406 * 8 7 6 11 11 N 1.35030 * 107.22539 * 0.37917 * 7 6 5 12 12 H 0.97004 * 124.88311 * 179.72259 * 11 7 6 13 13 N 1.28466 * 110.23188 * 359.74976 * 11 7 6 14 14 C 1.46497 * 120.00044 * 180.02562 * 2 1 3 15 15 H 1.09007 * 110.88985 * 176.12191 * 14 2 1 16 16 C 1.55161 * 111.00639 * 299.99821 * 14 2 1 17 17 C 1.54322 * 102.94436 * 153.57529 * 16 14 2 18 18 N 1.47026 * 107.26902 * 337.81126 * 17 16 14 19 19 C 1.36938 * 125.64233 * 178.91627 * 18 17 16 20 20 H 1.08002 * 119.99502 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00390 * 0.02828 * 19 18 17 22 22 N 1.31614 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99990 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47596 * 89.99756 * 23 21 19 25 25 H 1.48498 * 109.47109 * 209.99897 * 23 21 19 26 26 H 1.48501 * 109.47449 * 329.99346 * 23 21 19 27 27 C 1.47415 * 108.70539 * 358.94132 * 18 17 16 28 28 H 1.09004 * 109.47158 * 84.20114 * 1 2 3 29 29 H 1.08999 * 109.47099 * 204.19581 * 1 2 3 30 30 H 1.08990 * 109.47657 * 324.20115 * 1 2 3 31 31 H 1.08007 * 127.25079 * 359.97438 * 6 5 3 32 32 H 1.08996 * 109.47281 * 90.29570 * 8 7 6 33 33 H 1.08996 * 110.71979 * 271.94564 * 16 14 2 34 34 H 1.09007 * 110.71286 * 35.03611 * 16 14 2 35 35 H 1.08999 * 109.88008 * 97.22508 * 17 16 14 36 36 H 1.09000 * 109.88301 * 218.23966 * 17 16 14 37 37 H 0.97001 * 120.00121 * 179.97438 * 22 21 19 38 38 H 1.09004 * 110.36701 * 265.28834 * 27 18 17 39 39 H 1.08995 * 110.37017 * 142.96863 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3531 1.1681 -0.0612 5 6 1.4018 2.4455 0.0683 6 6 1.9658 3.7367 0.1985 7 6 0.9154 4.5903 0.2152 8 6 0.9848 6.0910 0.3347 9 9 -0.1614 6.5605 0.9853 10 9 2.1188 6.4481 1.0721 11 7 -0.2064 3.8461 0.1099 12 1 -1.1090 4.2014 0.0999 13 7 0.0936 2.5999 0.0252 14 6 2.1975 -1.2687 -0.0006 15 1 3.2718 -1.0972 -0.0694 16 6 1.8484 -2.1131 1.2535 17 6 2.1064 -3.5589 0.7796 18 7 2.0265 -3.5577 -0.6885 19 6 2.2173 -4.6450 -1.4989 20 1 2.1370 -4.5402 -2.5708 21 6 2.5140 -5.8817 -0.9427 22 7 2.6123 -6.0093 0.3635 23 14 2.7750 -7.3646 -2.0482 24 1 4.2108 -7.4626 -2.4143 25 1 2.3622 -8.5967 -1.3294 26 1 1.9593 -7.2135 -3.2800 27 6 1.7075 -2.1923 -1.1436 28 1 -0.3634 0.1038 -1.0224 29 1 -0.3633 -0.9374 0.4212 30 1 -0.3634 0.8334 0.6010 31 1 3.0138 3.9883 0.2682 32 1 1.0444 6.5323 -0.6601 33 1 2.5043 -1.8571 2.0855 34 1 0.8034 -1.9762 1.5318 35 1 3.0981 -3.8815 1.0966 36 1 1.3498 -4.2253 1.1938 37 1 2.8193 -6.8736 0.7523 38 1 0.6326 -2.0815 -1.2865 39 1 2.2391 -1.9666 -2.0679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033417281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:14 Heat of formation + Delta-G solvation = -36.331333 kcal Electronic energy + Delta-G solvation = -25902.787752 eV Core-core repulsion = 21711.552855 eV Total energy + Delta-G solvation = -4191.234898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.08690 -48.12388 -43.92403 -40.98366 -38.94212 -36.36794 -34.23947 -33.06302 -32.97568 -31.08467 -29.26575 -27.93506 -27.23493 -26.64379 -24.96695 -22.55235 -22.06678 -21.68605 -20.35242 -19.58471 -18.94317 -18.62512 -18.43944 -18.09272 -17.34700 -16.99189 -16.67796 -16.38983 -15.84350 -15.81017 -15.40188 -15.00250 -14.83750 -14.51239 -14.45045 -14.24742 -14.06088 -13.98457 -13.86717 -13.65133 -13.34195 -12.92155 -12.73609 -12.61902 -12.37638 -12.10684 -12.02713 -11.86029 -11.77455 -11.47155 -11.26645 -10.72477 -10.66536 -10.44629 -9.70543 -8.92269 -7.85699 -5.22691 0.29938 0.68564 1.46302 1.49160 1.50217 1.57797 1.84602 2.16798 2.49932 2.60506 3.09784 3.14401 3.33039 3.48533 3.65765 3.81166 3.90893 3.92834 4.05369 4.18575 4.23170 4.30110 4.51895 4.55739 4.63997 4.72267 4.81860 4.93022 4.98592 5.07105 5.16416 5.42600 5.50118 5.60840 5.72115 5.81289 6.17175 6.28693 6.57346 6.99715 7.08170 7.73665 8.37786 9.24648 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.043361 B = 0.002469 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.582053 B =11336.597817 C =11453.951030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.585 5.585 3 C 0.593 3.407 4 O -0.572 6.572 5 C -0.027 4.027 6 C -0.146 4.146 7 C -0.055 4.055 8 C 0.355 3.645 9 F -0.202 7.202 10 F -0.197 7.197 11 N -0.341 5.341 12 H 0.467 0.533 13 N -0.228 5.228 14 C 0.138 3.862 15 H 0.086 0.914 16 C -0.135 4.135 17 C 0.189 3.811 18 N -0.624 5.624 19 C -0.244 4.244 20 H 0.083 0.917 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.267 1.267 27 C 0.134 3.866 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.172 0.828 32 H 0.185 0.815 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.012 0.988 36 H 0.017 0.983 37 H 0.248 0.752 38 H 0.042 0.958 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 27.664 -0.104 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.315 5.315 3 C 0.381 3.619 4 O -0.450 6.450 5 C -0.185 4.185 6 C -0.174 4.174 7 C -0.183 4.183 8 C 0.300 3.700 9 F -0.183 7.183 10 F -0.178 7.178 11 N -0.059 5.059 12 H 0.317 0.683 13 N -0.067 5.067 14 C 0.033 3.967 15 H 0.104 0.896 16 C -0.174 4.174 17 C 0.064 3.936 18 N -0.351 5.351 19 C -0.373 4.373 20 H 0.101 0.899 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.192 1.192 27 C 0.008 3.992 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.189 0.811 32 H 0.201 0.799 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.888 26.847 -0.180 28.611 hybrid contribution 0.693 -0.757 -0.074 1.030 sum -9.195 26.090 -0.254 27.664 Atomic orbital electron populations 1.22247 0.76831 1.04256 1.03421 1.47642 1.08649 1.04340 1.70883 1.17304 0.85945 0.82504 0.76162 1.90779 1.14511 1.87158 1.52549 1.21619 0.90220 0.94618 1.12046 1.21665 1.01165 0.89583 1.05026 1.22086 0.88054 0.96135 1.12012 1.20154 0.71016 0.84786 0.94004 1.93032 1.51154 1.89426 1.84681 1.93049 1.52031 1.92150 1.80605 1.43388 1.10144 1.02460 1.49955 0.68288 1.73782 1.15425 0.99828 1.17682 1.22052 0.96578 0.81874 0.96186 0.89624 1.23070 1.02369 0.94989 0.96924 1.20867 0.98029 0.91574 0.83133 1.44660 1.83179 1.04498 1.02788 1.19450 1.40778 0.86999 0.90062 0.89885 1.25685 1.02141 1.00535 0.97449 1.70174 1.55890 1.23606 1.10304 0.85033 0.77738 0.78411 0.77854 1.21413 1.21887 1.19203 1.21833 0.97996 0.84210 0.95193 0.91524 0.90684 0.87667 0.81095 0.79862 0.90699 0.89652 0.96973 0.96432 0.94262 0.94060 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 8.21 127.77 1.05 2.85 16 2 N -0.58 -18.43 2.91 -818.38 -2.38 -20.81 16 3 C 0.59 19.30 7.68 86.75 0.67 19.97 16 4 O -0.57 -22.70 16.31 -3.96 -0.06 -22.77 16 5 C -0.03 -0.67 6.82 42.46 0.29 -0.38 16 6 C -0.15 -2.88 10.41 22.41 0.23 -2.65 16 7 C -0.06 -0.68 6.84 41.40 0.28 -0.40 16 8 C 0.36 2.37 5.83 71.24 0.42 2.79 16 9 F -0.20 -1.70 17.30 44.97 0.78 -0.93 16 10 F -0.20 -2.47 17.05 44.97 0.77 -1.71 16 11 N -0.34 -3.87 6.79 -47.93 -0.33 -4.19 16 12 H 0.47 1.70 8.96 -219.99 -1.97 -0.27 16 13 N -0.23 -4.27 8.75 -48.18 -0.42 -4.69 16 14 C 0.14 5.29 3.44 46.38 0.16 5.45 16 15 H 0.09 3.71 7.02 -2.38 -0.02 3.70 16 16 C -0.13 -5.18 6.50 31.78 0.21 -4.98 16 17 C 0.19 9.60 5.37 86.73 0.47 10.06 16 18 N -0.62 -33.01 3.39 -692.01 -2.35 -35.36 16 19 C -0.24 -13.96 10.28 84.03 0.86 -13.10 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 22 N -0.95 -57.97 10.31 21.65 0.22 -57.74 16 23 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 C 0.13 5.71 6.79 86.86 0.59 6.30 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.07 1.85 6.36 -2.39 -0.02 1.83 16 30 H 0.11 2.20 5.36 -2.39 -0.01 2.19 16 31 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 32 H 0.18 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.09 2.89 6.47 -2.38 -0.02 2.88 16 35 H 0.01 0.69 7.38 -2.39 -0.02 0.67 16 36 H 0.02 0.97 7.51 -2.39 -0.02 0.95 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.04 1.64 6.95 -2.38 -0.02 1.62 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.64 330.12 3.08 -73.56 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -0.86 Total: 3.64 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 5.69 Total: 22.63 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.25 Total: -122.79 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 1.54 Total: -2.63 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.64 3.08 -73.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033417281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.224 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds