Wall clock time and date at job start Tue Mar 31 2020 11:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34253 * 125.75749 * 2 1 4 4 C 1.38037 * 107.42003 * 179.97438 * 3 2 1 5 5 C 1.47433 * 126.41818 * 179.97438 * 4 3 2 6 6 O 1.21598 * 120.00022 * 180.02562 * 5 4 3 7 7 N 1.34771 * 119.99504 * 0.02708 * 5 4 3 8 8 C 1.46505 * 119.99622 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.09002 * 112.96693 * 306.67860 * 9 8 7 11 11 C 1.53944 * 113.77224 * 175.00107 * 9 8 7 12 12 C 1.53950 * 86.29079 * 222.09231 * 11 9 8 13 13 N 1.47585 * 113.77049 * 78.49995 * 9 8 7 14 14 C 1.36932 * 134.49495 * 318.94949 * 13 9 8 15 15 H 1.08007 * 119.99670 * 359.97438 * 14 13 9 16 16 C 1.38814 * 120.00453 * 179.97438 * 14 13 9 17 17 N 1.31623 * 119.99581 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00371 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46974 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47039 * 119.99851 * 18 16 14 21 21 H 1.48494 * 109.47110 * 240.00230 * 18 16 14 22 22 C 1.41297 * 107.16953 * 0.23887 * 4 3 2 23 23 C 1.50695 * 125.99048 * 179.73474 * 22 4 3 24 24 F 1.39906 * 109.47170 * 300.00508 * 23 22 4 25 25 F 1.39905 * 109.47156 * 60.00060 * 23 22 4 26 26 N 1.30451 * 108.01679 * 359.59426 * 22 4 3 27 27 H 1.09005 * 109.46854 * 89.99821 * 1 2 3 28 28 H 1.08999 * 109.47598 * 210.00164 * 1 2 3 29 29 H 1.09004 * 109.47133 * 330.00490 * 1 2 3 30 30 H 1.08001 * 126.28974 * 0.02562 * 3 2 1 31 31 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 32 32 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 33 33 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 34 34 H 1.09005 * 113.73705 * 336.43429 * 11 9 8 35 35 H 1.08994 * 113.74699 * 107.63859 * 11 9 8 36 36 H 1.08997 * 113.77044 * 137.90682 * 12 11 9 37 37 H 1.08997 * 113.76603 * 269.19409 * 12 11 9 38 38 H 0.97001 * 120.00214 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.47606 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7639 1.5060 0.0003 6 8 5.8682 0.9968 0.0004 7 7 4.6406 2.8480 -0.0001 8 6 5.8371 3.6935 -0.0010 9 6 5.4212 5.1658 -0.0019 10 1 4.7285 5.4116 -0.8068 11 6 6.6032 6.1446 0.1198 12 6 5.7164 6.9371 1.0974 13 7 5.0007 5.6660 1.3213 14 6 4.2486 5.1557 2.3456 15 1 3.8206 4.1677 2.2610 16 6 4.0363 5.9082 3.4926 17 7 4.5583 7.1120 3.5959 18 14 3.0098 5.2123 4.8895 19 1 2.5414 3.8501 4.5285 20 1 3.8349 5.1410 6.1222 21 1 1.8378 6.0922 5.1284 22 6 3.5311 -0.7575 -0.0047 23 6 4.7320 -1.6677 -0.0117 24 9 5.4988 -1.4194 -1.1553 25 9 5.5054 -1.4281 1.1293 26 7 2.2826 -1.1356 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8901 0.5138 30 1 1.9167 2.1169 0.0004 31 1 3.7598 3.2542 -0.0006 32 1 6.4308 3.4838 0.8888 33 1 6.4300 3.4832 -0.8912 34 1 7.4877 5.7088 0.5845 35 1 6.8276 6.6787 -0.8033 36 1 6.2485 7.3024 1.9758 37 1 5.1109 7.7055 0.6169 38 1 4.4103 7.6378 4.3975 39 1 4.4010 -2.7061 -0.0151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038340842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:11 Heat of formation + Delta-G solvation = 2.856304 kcal Electronic energy + Delta-G solvation = -26553.584124 eV Core-core repulsion = 22364.048530 eV Total energy + Delta-G solvation = -4189.535594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.75281 -46.77486 -41.63937 -38.98188 -37.77311 -34.15383 -33.84728 -32.21003 -30.96241 -28.66907 -27.98835 -27.52427 -25.59937 -23.37282 -22.90198 -21.94918 -20.69242 -19.99296 -19.13311 -18.02979 -17.10880 -17.06837 -16.79222 -16.37635 -15.87685 -15.73562 -15.39149 -15.20852 -14.43075 -14.16429 -13.78792 -13.63478 -13.59931 -13.28128 -13.14519 -13.10887 -12.95402 -12.77250 -12.56921 -11.83196 -11.53539 -11.43312 -11.10604 -11.06243 -11.02381 -10.76202 -10.53795 -10.02336 -9.94815 -9.75387 -9.66940 -9.33380 -8.95682 -8.81785 -8.46468 -6.90253 -5.78167 -3.10261 1.30017 1.73512 1.90208 3.34321 3.39743 3.43066 3.47142 3.63127 3.70926 4.03784 4.28933 4.41170 4.46582 4.71072 4.74515 5.01493 5.05664 5.09775 5.11839 5.26347 5.39344 5.46111 5.63838 5.74681 5.88774 5.93707 6.14941 6.35505 6.42248 6.45512 6.63399 6.74756 6.94340 7.10245 7.24657 7.41701 7.59068 7.95882 7.97340 8.65806 9.02853 9.69627 10.58564 11.38705 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.004472 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.367507 B = 6260.154809 C = 7282.167586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.352 5.352 3 C 0.103 3.897 4 C -0.250 4.250 5 C 0.582 3.418 6 O -0.533 6.533 7 N -0.711 5.711 8 C 0.126 3.874 9 C 0.126 3.874 10 H 0.049 0.951 11 C -0.156 4.156 12 C 0.158 3.842 13 N -0.603 5.603 14 C -0.217 4.217 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.292 1.292 22 C 0.046 3.954 23 C 0.367 3.633 24 F -0.182 7.182 25 F -0.180 7.180 26 N -0.268 5.268 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.193 0.807 31 H 0.397 0.603 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.252 0.748 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 -12.714 -10.383 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.132 5.132 3 C -0.047 4.047 4 C -0.265 4.265 5 C 0.368 3.632 6 O -0.410 6.410 7 N -0.361 5.361 8 C 0.002 3.998 9 C 0.018 3.982 10 H 0.066 0.934 11 C -0.195 4.195 12 C 0.033 3.967 13 N -0.329 5.329 14 C -0.344 4.344 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.737 3.263 19 H -0.207 1.207 20 H -0.217 1.217 21 H -0.219 1.219 22 C -0.122 4.122 23 C 0.311 3.689 24 F -0.163 7.163 25 F -0.161 7.161 26 N -0.091 5.091 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.209 0.791 31 H 0.231 0.769 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.447 -14.035 -10.049 18.800 hybrid contribution -0.803 0.837 0.888 1.460 sum -8.250 -13.199 -9.161 18.061 Atomic orbital electron populations 1.22107 0.72794 1.05507 1.04190 1.48286 1.07274 1.03372 1.54239 1.23242 0.90061 0.94066 0.97339 1.20347 0.93564 0.93068 1.19504 1.17136 0.87346 0.81900 0.76821 1.90807 1.26288 1.73709 1.50229 1.45732 1.10595 1.05099 1.74690 1.21747 0.86760 0.89738 1.01580 1.22510 0.94439 0.91167 0.90041 0.93371 1.23769 0.97569 0.98577 0.99538 1.22195 0.90303 0.88876 0.95292 1.46065 1.60592 1.14423 1.11805 1.18973 1.23979 0.98722 0.92768 0.90364 1.24747 1.01120 0.96415 0.98121 1.69826 1.48460 1.10345 1.27991 0.86144 0.79658 0.77771 0.82759 1.20668 1.21693 1.21876 1.22859 0.93747 0.93941 1.01668 1.19100 0.80409 0.96785 0.72624 1.93053 1.76890 1.95990 1.50384 1.93077 1.76434 1.96081 1.50472 1.76984 1.00409 1.08148 1.23533 0.89848 0.88625 0.88435 0.79064 0.76909 0.90857 0.92063 0.90453 0.92819 0.90848 0.95613 0.93756 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.44 59.85 0.68 1.22 16 2 N -0.35 -3.80 3.98 -67.59 -0.27 -4.07 16 3 C 0.10 1.21 10.99 -16.57 -0.18 1.03 16 4 C -0.25 -3.86 6.13 -105.06 -0.64 -4.51 16 5 C 0.58 10.58 7.81 -12.52 -0.10 10.48 16 6 O -0.53 -11.33 14.14 5.28 0.07 -11.26 16 7 N -0.71 -12.14 5.52 -61.38 -0.34 -12.48 16 8 C 0.13 2.30 5.54 -4.04 -0.02 2.28 16 9 C 0.13 2.38 4.33 -66.86 -0.29 2.09 16 10 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.16 -2.82 7.86 -25.80 -0.20 -3.02 16 12 C 0.16 3.59 7.52 -2.97 -0.02 3.57 16 13 N -0.60 -14.39 3.57 -170.71 -0.61 -15.00 16 14 C -0.22 -5.71 10.51 -15.06 -0.16 -5.87 16 15 H 0.08 1.98 7.80 -52.48 -0.41 1.57 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -26.68 11.38 55.49 0.63 -26.04 16 18 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.05 0.69 6.70 -82.02 -0.55 0.14 16 23 C 0.37 5.14 5.11 36.00 0.18 5.33 16 24 F -0.18 -2.88 16.29 2.25 0.04 -2.85 16 25 F -0.18 -3.02 16.27 2.25 0.04 -2.98 16 26 N -0.27 -3.54 12.50 33.90 0.42 -3.12 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.19 1.64 7.46 -52.49 -0.39 1.24 16 31 H 0.40 6.08 7.40 -40.82 -0.30 5.78 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -35.59 343.46 -6.09 -41.69 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.83 Total: 1.76 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -1.40 Total: 12.42 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.16 Total: -60.71 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.07 Total: -5.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.59 -6.09 -41.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038340842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.543 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds