Wall clock time and date at job start Tue Mar 31 2020 11:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34253 * 125.75749 * 2 1 4 4 C 1.38037 * 107.42003 * 179.97438 * 3 2 1 5 5 C 1.47433 * 126.41818 * 179.97438 * 4 3 2 6 6 O 1.21598 * 120.00022 * 180.02562 * 5 4 3 7 7 N 1.34771 * 119.99504 * 0.02708 * 5 4 3 8 8 C 1.46505 * 119.99622 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.09002 * 112.96693 * 306.67860 * 9 8 7 11 11 C 1.53944 * 113.77224 * 175.00107 * 9 8 7 12 12 C 1.53950 * 86.29079 * 222.09231 * 11 9 8 13 13 N 1.47585 * 113.77049 * 78.49995 * 9 8 7 14 14 C 1.36932 * 134.49495 * 318.94949 * 13 9 8 15 15 H 1.08007 * 119.99670 * 359.97438 * 14 13 9 16 16 C 1.38814 * 120.00453 * 179.97438 * 14 13 9 17 17 N 1.31623 * 119.99581 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00371 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46974 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47039 * 119.99851 * 18 16 14 21 21 H 1.48494 * 109.47110 * 240.00230 * 18 16 14 22 22 C 1.41297 * 107.16953 * 0.23887 * 4 3 2 23 23 C 1.50695 * 125.99048 * 179.73474 * 22 4 3 24 24 F 1.39906 * 109.47170 * 300.00508 * 23 22 4 25 25 F 1.39905 * 109.47156 * 60.00060 * 23 22 4 26 26 N 1.30451 * 108.01679 * 359.59426 * 22 4 3 27 27 H 1.09005 * 109.46854 * 89.99821 * 1 2 3 28 28 H 1.08999 * 109.47598 * 210.00164 * 1 2 3 29 29 H 1.09004 * 109.47133 * 330.00490 * 1 2 3 30 30 H 1.08001 * 126.28974 * 0.02562 * 3 2 1 31 31 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 32 32 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 33 33 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 34 34 H 1.09005 * 113.73705 * 336.43429 * 11 9 8 35 35 H 1.08994 * 113.74699 * 107.63859 * 11 9 8 36 36 H 1.08997 * 113.77044 * 137.90682 * 12 11 9 37 37 H 1.08997 * 113.76603 * 269.19409 * 12 11 9 38 38 H 0.97001 * 120.00214 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.47606 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7639 1.5060 0.0003 6 8 5.8682 0.9968 0.0004 7 7 4.6406 2.8480 -0.0001 8 6 5.8371 3.6935 -0.0010 9 6 5.4212 5.1658 -0.0019 10 1 4.7285 5.4116 -0.8068 11 6 6.6032 6.1446 0.1198 12 6 5.7164 6.9371 1.0974 13 7 5.0007 5.6660 1.3213 14 6 4.2486 5.1557 2.3456 15 1 3.8206 4.1677 2.2610 16 6 4.0363 5.9082 3.4926 17 7 4.5583 7.1120 3.5959 18 14 3.0098 5.2123 4.8895 19 1 2.5414 3.8501 4.5285 20 1 3.8349 5.1410 6.1222 21 1 1.8378 6.0922 5.1284 22 6 3.5311 -0.7575 -0.0047 23 6 4.7320 -1.6677 -0.0117 24 9 5.4988 -1.4194 -1.1553 25 9 5.5054 -1.4281 1.1293 26 7 2.2826 -1.1356 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8901 0.5138 30 1 1.9167 2.1169 0.0004 31 1 3.7598 3.2542 -0.0006 32 1 6.4308 3.4838 0.8888 33 1 6.4300 3.4832 -0.8912 34 1 7.4877 5.7088 0.5845 35 1 6.8276 6.6787 -0.8033 36 1 6.2485 7.3024 1.9758 37 1 5.1109 7.7055 0.6169 38 1 4.4103 7.6378 4.3975 39 1 4.4010 -2.7061 -0.0151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038340842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:10 Heat of formation + Delta-G solvation = -22.758652 kcal Electronic energy + Delta-G solvation = -26554.694872 eV Core-core repulsion = 22364.048530 eV Total energy + Delta-G solvation = -4190.646342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.89955 -47.94712 -42.60600 -40.42796 -39.37537 -35.50576 -34.80508 -34.17719 -32.04112 -29.86808 -29.50645 -28.97178 -26.56371 -25.25890 -24.18557 -23.21786 -21.77282 -21.28920 -20.73918 -19.26915 -18.39957 -18.24577 -18.11309 -17.62043 -17.07635 -16.87674 -16.71258 -16.63370 -15.97722 -15.61712 -15.40711 -14.92640 -14.81633 -14.61979 -14.30162 -14.29789 -13.94966 -13.69940 -13.47312 -13.45941 -13.22705 -12.96142 -12.65237 -12.55205 -12.54578 -12.26484 -12.06700 -11.81708 -11.48704 -11.36291 -10.88681 -10.82871 -10.80089 -10.12324 -9.76735 -8.84582 -7.83713 -5.14681 0.36651 0.61296 1.12280 1.42665 1.46654 1.53651 2.23457 2.38714 2.49387 2.60265 3.12337 3.34275 3.37151 3.42477 3.74791 3.83368 4.00248 4.00703 4.13271 4.20957 4.27257 4.40141 4.41195 4.54545 4.68926 4.69520 4.75925 4.86720 4.93065 5.10051 5.15370 5.38066 5.50578 5.65298 5.67804 5.79541 6.01650 6.13150 6.64504 6.99049 7.31987 7.69141 8.64153 9.33580 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.004472 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.367507 B = 6260.154809 C = 7282.167586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.342 5.342 3 C 0.124 3.876 4 C -0.292 4.292 5 C 0.580 3.420 6 O -0.574 6.574 7 N -0.706 5.706 8 C 0.136 3.864 9 C 0.135 3.865 10 H 0.077 0.923 11 C -0.133 4.133 12 C 0.150 3.850 13 N -0.628 5.628 14 C -0.207 4.207 15 H 0.087 0.913 16 C -0.072 4.072 17 N -0.955 5.955 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.304 1.304 21 H -0.292 1.292 22 C 0.030 3.970 23 C 0.356 3.644 24 F -0.197 7.197 25 F -0.201 7.201 26 N -0.273 5.273 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.226 0.774 31 H 0.407 0.593 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.244 0.756 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 -13.623 -11.872 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.120 5.120 3 C -0.028 4.028 4 C -0.307 4.307 5 C 0.368 3.632 6 O -0.455 6.455 7 N -0.356 5.356 8 C 0.011 3.989 9 C 0.029 3.971 10 H 0.094 0.906 11 C -0.172 4.172 12 C 0.025 3.975 13 N -0.355 5.355 14 C -0.335 4.335 15 H 0.105 0.895 16 C -0.264 4.264 17 N -0.605 5.605 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.232 1.232 21 H -0.219 1.219 22 C -0.137 4.137 23 C 0.301 3.699 24 F -0.178 7.178 25 F -0.182 7.182 26 N -0.097 5.097 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.242 0.758 31 H 0.242 0.758 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.745 -14.978 -11.579 21.293 hybrid contribution -0.184 1.094 1.271 1.687 sum -9.929 -13.884 -10.309 19.940 Atomic orbital electron populations 1.22618 0.69610 1.07236 1.06216 1.48765 1.08855 1.02447 1.51976 1.23643 0.88833 0.95553 0.94761 1.20268 0.94013 0.93263 1.23173 1.17540 0.87811 0.82135 0.75762 1.90775 1.28100 1.74393 1.52199 1.45636 1.10636 1.04880 1.74474 1.21521 0.87114 0.89575 1.00729 1.22670 0.94768 0.91413 0.88216 0.90592 1.23577 0.96523 0.97244 0.99815 1.22159 0.91126 0.89051 0.95181 1.46401 1.60275 1.15361 1.13442 1.19343 1.22285 0.98693 0.93215 0.89530 1.25477 1.03242 0.97066 1.00630 1.70007 1.50633 1.11692 1.28197 0.85213 0.77989 0.77850 0.79569 1.18924 1.23233 1.21881 1.22949 0.94404 0.93951 1.02438 1.19685 0.79849 0.99049 0.71316 1.93010 1.77410 1.96253 1.51139 1.93022 1.77153 1.96373 1.51676 1.76941 0.99923 1.09311 1.23494 0.87633 0.87776 0.85921 0.75784 0.75769 0.94313 0.90388 0.90709 0.88744 0.94534 0.95729 0.94715 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.44 127.77 1.46 2.03 16 2 N -0.34 -6.22 3.98 -367.77 -1.46 -7.69 16 3 C 0.12 2.54 10.99 84.28 0.93 3.46 16 4 C -0.29 -8.63 6.13 -20.15 -0.12 -8.75 16 5 C 0.58 20.75 7.81 86.67 0.68 21.43 16 6 O -0.57 -24.79 14.14 -4.02 -0.06 -24.85 16 7 N -0.71 -23.03 5.52 -466.37 -2.57 -25.61 16 8 C 0.14 4.77 5.54 86.38 0.48 5.25 16 9 C 0.14 4.80 4.33 45.09 0.20 4.99 16 10 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 11 C -0.13 -4.54 7.86 31.25 0.25 -4.29 16 12 C 0.15 6.77 7.52 86.48 0.65 7.42 16 13 N -0.63 -29.54 3.57 -694.01 -2.48 -32.02 16 14 C -0.21 -10.76 10.51 84.03 0.88 -9.88 16 15 H 0.09 4.25 7.80 -2.91 -0.02 4.23 16 16 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 17 N -0.95 -56.77 11.38 21.65 0.25 -56.53 16 18 Si 0.96 44.97 29.55 68.60 2.03 46.99 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 C 0.03 0.86 6.70 43.51 0.29 1.16 16 23 C 0.36 9.86 5.11 71.23 0.36 10.23 16 24 F -0.20 -6.29 16.29 44.97 0.73 -5.56 16 25 F -0.20 -6.88 16.27 44.97 0.73 -6.14 16 26 N -0.27 -6.61 12.50 -46.67 -0.58 -7.19 16 27 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.23 2.85 7.46 -2.91 -0.02 2.83 16 31 H 0.41 11.43 7.40 -92.71 -0.69 10.75 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.07 2.61 8.10 -2.38 -0.02 2.59 16 35 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 36 H 0.04 1.90 7.15 -2.39 -0.02 1.89 16 37 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.17 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -80.15 343.46 3.51 -76.64 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.41 Total: 12.42 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 6.52 Total: 29.53 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -6.85 Total: -129.03 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 1.46 Total: -11.71 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -80.15 3.51 -76.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038340842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.883 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds