Wall clock time and date at job start Tue Mar 31 2020 10:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.54908 * 111.00368 * 236.09952 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21573 * 119.99941 * 0.02562 * 6 5 4 8 8 C 1.47712 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.41498 * 126.51515 * 179.71168 * 8 6 5 10 10 C 1.35370 * 105.50196 * 179.84990 * 9 8 6 11 11 N 1.35036 * 107.22685 * 0.41510 * 10 9 8 12 12 C 1.46493 * 124.88729 * 179.73017 * 11 10 9 13 13 F 1.39898 * 109.47325 * 210.02683 * 12 11 10 14 14 F 1.39902 * 109.46824 * 330.02197 * 12 11 10 15 15 N 1.28473 * 110.22940 * 359.72633 * 11 10 9 16 16 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 17 17 C 1.54325 * 107.30599 * 358.92448 * 16 5 4 18 18 H 1.08997 * 110.72163 * 96.18354 * 17 16 5 19 19 N 1.46497 * 110.72131 * 219.45483 * 17 16 5 20 20 C 1.36940 * 120.00145 * 268.52531 * 19 17 16 21 21 H 1.08003 * 119.99723 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00230 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00088 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00129 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47504 * 119.99893 * 24 22 20 27 27 H 1.48504 * 109.47332 * 239.99957 * 24 22 20 28 28 H 1.09001 * 109.47276 * 182.45105 * 1 2 3 29 29 H 1.09003 * 109.46690 * 302.44645 * 1 2 3 30 30 H 1.08998 * 109.47248 * 62.44806 * 1 2 3 31 31 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 32 32 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 33 33 H 1.07997 * 127.25222 * 0.02562 * 9 8 6 34 34 H 1.07997 * 126.38976 * 180.14533 * 10 9 8 35 35 H 1.08996 * 109.47681 * 90.02169 * 12 11 10 36 36 H 1.09004 * 109.85762 * 239.50064 * 16 5 4 37 37 H 1.08995 * 110.00297 * 118.43011 * 16 5 4 38 38 H 0.96996 * 120.00123 * 88.52155 * 19 17 16 39 39 H 0.97000 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4280 -1.2430 -0.7761 6 6 4.4473 -1.5601 -1.5988 7 8 4.2982 -1.4967 -2.8037 8 6 5.7460 -1.9834 -1.0366 9 6 6.9004 -2.3509 -1.7677 10 6 7.8356 -2.6560 -0.8378 11 7 7.2643 -2.4881 0.3742 12 6 7.9349 -2.7192 1.6559 13 9 6.9934 -3.1225 2.6088 14 9 8.9012 -3.7192 1.5029 15 7 6.0479 -2.0964 0.2414 16 6 3.4675 -1.2741 0.6959 17 6 2.0862 -0.8079 1.2022 18 1 1.4468 -1.6631 1.4210 19 7 2.2287 0.0496 2.3814 20 6 2.2001 -0.5002 3.6353 21 1 2.0721 -1.5659 3.7548 22 6 2.3346 0.3124 4.7526 23 7 2.4901 1.6112 4.6070 24 14 2.2949 -0.4375 6.4631 25 1 2.1111 -1.9072 6.3551 26 1 3.5741 -0.1490 7.1599 27 1 1.1684 0.1474 7.2340 28 1 -0.3634 -1.0267 0.0439 29 1 -0.3633 0.5514 0.8673 30 1 -0.3633 0.4753 -0.9111 31 1 1.4518 -1.6704 -1.4024 32 1 2.1541 -0.1725 -2.0842 33 1 7.0127 -2.3790 -2.8414 34 1 8.8484 -2.9783 -1.0294 35 1 8.4146 -1.7980 1.9864 36 1 4.2427 -0.5997 1.0599 37 1 3.6662 -2.2883 1.0423 38 1 2.3433 1.0068 2.2741 39 1 2.5837 2.1790 5.3878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054716669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:32 Heat of formation + Delta-G solvation = -22.076916 kcal Electronic energy + Delta-G solvation = -26590.412094 eV Core-core repulsion = 22399.795314 eV Total energy + Delta-G solvation = -4190.616780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.66766 -47.74620 -42.75438 -39.56802 -37.45082 -34.05743 -33.17099 -32.33684 -30.92429 -30.64074 -27.57842 -27.28784 -25.83518 -24.01616 -22.88200 -21.82879 -21.17306 -19.91632 -19.29615 -18.69349 -18.49824 -17.57326 -17.12757 -16.84001 -15.98082 -15.62931 -15.27932 -14.60137 -14.53294 -14.50203 -14.10272 -14.01535 -13.57667 -13.52894 -13.43136 -13.10849 -13.00362 -12.58433 -12.54963 -12.30201 -12.08263 -11.48474 -11.15680 -11.05179 -10.94818 -10.63186 -10.56742 -10.21572 -10.04255 -9.90692 -9.70148 -9.59305 -9.40653 -8.97324 -8.28672 -7.05723 -5.82733 -3.12619 1.36062 1.60143 1.94648 3.14395 3.21368 3.39922 3.46693 3.48217 3.49712 3.65994 4.10245 4.45707 4.49179 4.57513 4.89528 5.10114 5.21649 5.26688 5.42714 5.54852 5.60516 5.67754 5.82765 5.90090 5.97010 6.02679 6.10387 6.25993 6.28462 6.31446 6.50009 6.60547 6.64556 6.66393 6.95324 7.57896 7.66796 7.79216 8.32786 8.35641 9.46995 10.00996 10.36239 11.39438 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.005378 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.046150 B = 5205.214962 C = 7742.030722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.612 3.388 7 O -0.546 6.546 8 C 0.008 3.992 9 C -0.170 4.170 10 C -0.008 4.008 11 N -0.353 5.353 12 C 0.504 3.496 13 F -0.160 7.160 14 F -0.178 7.178 15 N -0.226 5.226 16 C 0.083 3.917 17 C 0.175 3.825 18 H 0.068 0.932 19 N -0.709 5.709 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.009 4.009 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.291 1.291 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.169 0.831 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.386 0.614 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -7.358 -10.216 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.398 3.602 7 O -0.423 6.423 8 C -0.155 4.155 9 C -0.198 4.198 10 C -0.148 4.148 11 N -0.150 5.150 12 C 0.371 3.629 13 F -0.141 7.141 14 F -0.159 7.159 15 N -0.059 5.059 16 C -0.043 4.043 17 C 0.063 3.937 18 H 0.086 0.914 19 N -0.349 5.349 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.186 0.814 34 H 0.205 0.795 35 H 0.181 0.819 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.221 0.779 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.744 -7.381 -9.453 15.453 hybrid contribution 0.668 -0.399 0.383 0.867 sum 10.412 -7.780 -9.070 15.850 Atomic orbital electron populations 1.21593 0.93806 1.01823 1.01733 1.22673 0.96359 0.99822 0.94685 0.89818 1.22308 0.82262 0.98286 0.97969 1.48438 1.11627 1.64212 1.08744 1.16456 0.81078 0.77587 0.85050 1.90766 1.82451 1.55405 1.13674 1.22146 0.96791 1.07354 0.89222 1.21850 0.91262 1.05739 1.00916 1.22841 1.01574 1.06973 0.83399 1.46872 1.10118 1.50758 1.07288 1.21509 0.76985 0.89841 0.74569 1.93207 1.66285 1.92083 1.62542 1.93130 1.62532 1.65195 1.95062 1.73958 0.96098 1.15080 1.20766 1.23427 1.02513 1.01969 0.76376 1.21305 0.91822 0.93736 0.86863 0.91389 1.42342 1.86251 1.06180 1.00128 1.19300 1.42170 0.92600 0.83188 0.90955 1.24731 1.02539 0.95421 0.97857 1.69671 1.56475 1.02823 1.28897 0.86145 0.77179 0.78255 0.84771 1.20464 1.21882 1.21843 0.92800 0.91399 0.93209 0.91383 0.90724 0.81393 0.79497 0.81909 0.90364 0.91864 0.77918 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.29 37.16 0.35 -1.53 16 2 C -0.12 -1.86 3.27 -88.47 -0.29 -2.15 16 3 H 0.08 1.42 8.01 -51.92 -0.42 1.01 16 4 C 0.11 1.76 6.37 -2.53 -0.02 1.74 16 5 N -0.60 -10.36 3.34 -171.46 -0.57 -10.93 16 6 C 0.61 10.86 7.86 -12.39 -0.10 10.77 16 7 O -0.55 -10.54 17.18 5.30 0.09 -10.45 16 8 C 0.01 0.13 6.98 -82.77 -0.58 -0.45 16 9 C -0.17 -2.11 10.81 -39.36 -0.43 -2.54 16 10 C -0.01 -0.09 10.98 -17.16 -0.19 -0.27 16 11 N -0.35 -4.30 3.68 -66.63 -0.24 -4.55 16 12 C 0.50 4.75 6.56 59.84 0.39 5.14 16 13 F -0.16 -2.10 17.26 2.25 0.04 -2.06 16 14 F -0.18 -1.52 16.96 2.25 0.04 -1.49 16 15 N -0.23 -3.56 9.27 33.42 0.31 -3.26 16 16 C 0.08 1.54 5.31 -2.92 -0.02 1.52 16 17 C 0.18 3.36 3.08 -66.10 -0.20 3.16 16 18 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 19 N -0.71 -16.87 5.15 -51.65 -0.27 -17.14 16 20 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 21 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 32 H 0.07 1.11 8.03 -51.93 -0.42 0.70 16 33 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.16 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.62 7.55 -51.93 -0.39 1.23 16 37 H 0.06 1.21 7.78 -51.93 -0.40 0.81 16 38 H 0.39 9.84 7.76 -40.82 -0.32 9.52 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -32.76 342.65 -5.92 -38.68 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.86 Total: 7.19 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -1.32 Total: 8.48 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.05 Total: -62.33 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.08 Total: -3.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.76 -5.92 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054716669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.607 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds