Wall clock time and date at job start Tue Mar 31 2020 10:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.91331 * 2 1 4 4 C 1.54908 * 111.00368 * 236.09952 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.34774 * 125.65138 * 204.15299 * 5 4 2 7 7 O 1.21573 * 119.99941 * 0.02562 * 6 5 4 8 8 C 1.47712 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.41498 * 126.51515 * 179.71168 * 8 6 5 10 10 C 1.35370 * 105.50196 * 179.84990 * 9 8 6 11 11 N 1.35036 * 107.22685 * 0.41510 * 10 9 8 12 12 C 1.46493 * 124.88729 * 179.73017 * 11 10 9 13 13 F 1.39898 * 109.47325 * 210.02683 * 12 11 10 14 14 F 1.39902 * 109.46824 * 330.02197 * 12 11 10 15 15 N 1.28473 * 110.22940 * 359.72633 * 11 10 9 16 16 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 17 17 C 1.54325 * 107.30599 * 358.92448 * 16 5 4 18 18 H 1.08997 * 110.72163 * 96.18354 * 17 16 5 19 19 N 1.46497 * 110.72131 * 219.45483 * 17 16 5 20 20 C 1.36940 * 120.00145 * 268.52531 * 19 17 16 21 21 H 1.08003 * 119.99723 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00230 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00088 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00129 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47504 * 119.99893 * 24 22 20 27 27 H 1.48504 * 109.47332 * 239.99957 * 24 22 20 28 28 H 1.09001 * 109.47276 * 182.45105 * 1 2 3 29 29 H 1.09003 * 109.46690 * 302.44645 * 1 2 3 30 30 H 1.08998 * 109.47248 * 62.44806 * 1 2 3 31 31 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 32 32 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 33 33 H 1.07997 * 127.25222 * 0.02562 * 9 8 6 34 34 H 1.07997 * 126.38976 * 180.14533 * 10 9 8 35 35 H 1.08996 * 109.47681 * 90.02169 * 12 11 10 36 36 H 1.09004 * 109.85762 * 239.50064 * 16 5 4 37 37 H 1.08995 * 110.00297 * 118.43011 * 16 5 4 38 38 H 0.96996 * 120.00123 * 88.52155 * 19 17 16 39 39 H 0.97000 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4280 -1.2430 -0.7761 6 6 4.4473 -1.5601 -1.5988 7 8 4.2982 -1.4967 -2.8037 8 6 5.7460 -1.9834 -1.0366 9 6 6.9004 -2.3509 -1.7677 10 6 7.8356 -2.6560 -0.8378 11 7 7.2643 -2.4881 0.3742 12 6 7.9349 -2.7192 1.6559 13 9 6.9934 -3.1225 2.6088 14 9 8.9012 -3.7192 1.5029 15 7 6.0479 -2.0964 0.2414 16 6 3.4675 -1.2741 0.6959 17 6 2.0862 -0.8079 1.2022 18 1 1.4468 -1.6631 1.4210 19 7 2.2287 0.0496 2.3814 20 6 2.2001 -0.5002 3.6353 21 1 2.0721 -1.5659 3.7548 22 6 2.3346 0.3124 4.7526 23 7 2.4901 1.6112 4.6070 24 14 2.2949 -0.4375 6.4631 25 1 2.1111 -1.9072 6.3551 26 1 3.5741 -0.1490 7.1599 27 1 1.1684 0.1474 7.2340 28 1 -0.3634 -1.0267 0.0439 29 1 -0.3633 0.5514 0.8673 30 1 -0.3633 0.4753 -0.9111 31 1 1.4518 -1.6704 -1.4024 32 1 2.1541 -0.1725 -2.0842 33 1 7.0127 -2.3790 -2.8414 34 1 8.8484 -2.9783 -1.0294 35 1 8.4146 -1.7980 1.9864 36 1 4.2427 -0.5997 1.0599 37 1 3.6662 -2.2883 1.0423 38 1 2.3433 1.0068 2.2741 39 1 2.5837 2.1790 5.3878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054716669.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:32 Heat of formation + Delta-G solvation = -44.201454 kcal Electronic energy + Delta-G solvation = -26591.371486 eV Core-core repulsion = 22399.795314 eV Total energy + Delta-G solvation = -4191.576172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.45190 -48.56292 -43.74341 -40.96407 -38.91200 -35.87192 -34.33286 -33.64078 -32.49493 -31.85156 -29.17703 -28.45849 -26.88570 -25.87657 -24.12753 -22.84179 -22.50352 -21.38626 -20.44051 -19.64598 -19.28919 -19.09891 -18.44823 -18.07015 -17.34332 -16.91648 -16.67590 -16.08108 -15.63344 -15.40490 -15.36226 -15.28968 -14.89784 -14.74607 -14.56424 -14.41854 -14.25202 -14.07799 -13.71672 -13.46167 -13.29663 -13.01288 -12.87213 -12.83655 -12.27420 -12.11879 -12.03959 -11.94238 -11.68700 -11.50271 -11.30067 -10.92377 -10.65132 -10.33614 -9.70230 -9.04471 -7.93287 -5.22573 0.28426 0.72632 1.01243 1.48778 1.49828 1.59225 1.88764 2.22502 2.49644 2.57192 2.78859 3.30049 3.38943 3.46287 3.67148 3.74003 3.82624 3.91255 4.05382 4.23941 4.37118 4.46456 4.53965 4.59675 4.65622 4.69290 4.90391 4.95203 5.04732 5.13161 5.17629 5.28720 5.34645 5.47191 5.50798 5.56298 6.27107 6.35632 6.56557 6.99900 7.35275 8.05814 8.31043 9.29881 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.005378 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.046150 B = 5205.214962 C = 7742.030722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 H 0.072 0.928 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.608 3.392 7 O -0.566 6.566 8 C -0.022 4.022 9 C -0.183 4.183 10 C 0.019 3.981 11 N -0.354 5.354 12 C 0.499 3.501 13 F -0.186 7.186 14 F -0.170 7.170 15 N -0.262 5.262 16 C 0.106 3.894 17 C 0.169 3.831 18 H 0.070 0.930 19 N -0.718 5.718 20 C -0.237 4.237 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.967 5.967 24 Si 0.966 3.034 25 H -0.268 1.268 26 H -0.295 1.295 27 H -0.294 1.294 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.183 0.817 34 H 0.235 0.765 35 H 0.209 0.791 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.375 0.625 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.188 -8.598 -10.878 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.091 0.909 4 C -0.006 4.006 5 N -0.334 5.334 6 C 0.396 3.604 7 O -0.445 6.445 8 C -0.184 4.184 9 C -0.211 4.211 10 C -0.121 4.121 11 N -0.152 5.152 12 C 0.368 3.632 13 F -0.167 7.167 14 F -0.151 7.151 15 N -0.096 5.096 16 C -0.020 4.020 17 C 0.059 3.941 18 H 0.088 0.912 19 N -0.357 5.357 20 C -0.369 4.369 21 H 0.094 0.906 22 C -0.260 4.260 23 N -0.617 5.617 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.222 1.222 27 H -0.221 1.221 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.200 0.800 34 H 0.252 0.748 35 H 0.225 0.775 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.208 0.792 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.777 -8.664 -10.143 17.150 hybrid contribution 0.432 -0.083 0.510 0.674 sum 11.210 -8.748 -9.634 17.175 Atomic orbital electron populations 1.21551 0.91986 1.02597 1.02189 1.22567 0.97758 0.98754 0.93300 0.90943 1.22409 0.81615 0.98944 0.97614 1.48472 1.12489 1.64397 1.07999 1.16782 0.81731 0.77027 0.84856 1.90736 1.83018 1.56418 1.14331 1.22120 0.97019 1.09137 0.90147 1.22126 0.90576 1.06319 1.02054 1.23521 1.02706 1.04015 0.81822 1.47204 1.09356 1.49672 1.08944 1.22252 0.76400 0.91391 0.73120 1.93153 1.67531 1.92463 1.63552 1.93146 1.61804 1.65268 1.94881 1.73867 0.98119 1.16669 1.20955 1.22922 1.01038 1.00672 0.77341 1.21479 0.92304 0.93746 0.86605 0.91182 1.42425 1.86415 1.06064 1.00758 1.19616 1.40165 0.92724 0.84346 0.90637 1.25445 1.03487 0.95839 1.01225 1.69812 1.58513 1.04012 1.29379 0.85186 0.76604 0.78038 0.80614 1.19221 1.22203 1.22116 0.91636 0.93359 0.90541 0.89594 0.89919 0.80012 0.74838 0.77541 0.92708 0.92689 0.79196 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.29 71.98 0.67 -2.72 16 2 C -0.10 -3.29 3.27 -9.40 -0.03 -3.32 16 3 H 0.07 2.48 8.01 -2.38 -0.02 2.46 16 4 C 0.12 3.44 6.37 86.85 0.55 3.99 16 5 N -0.60 -20.81 3.34 -814.66 -2.72 -23.53 16 6 C 0.61 21.61 7.86 86.75 0.68 22.29 16 7 O -0.57 -21.73 17.18 -3.94 -0.07 -21.80 16 8 C -0.02 -0.71 6.98 42.46 0.30 -0.41 16 9 C -0.18 -4.26 10.81 22.41 0.24 -4.02 16 10 C 0.02 0.33 10.98 83.54 0.92 1.25 16 11 N -0.35 -7.99 3.68 -364.71 -1.34 -9.33 16 12 C 0.50 8.34 6.56 127.77 0.84 9.18 16 13 F -0.19 -4.74 17.26 44.97 0.78 -3.97 16 14 F -0.17 -2.42 16.96 44.97 0.76 -1.66 16 15 N -0.26 -8.18 9.27 -48.18 -0.45 -8.62 16 16 C 0.11 4.02 5.31 86.68 0.46 4.48 16 17 C 0.17 6.53 3.08 46.18 0.14 6.67 16 18 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 19 N -0.72 -34.76 5.15 -317.34 -1.63 -36.39 16 20 C -0.24 -12.67 9.96 84.03 0.84 -11.83 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 23 N -0.97 -57.57 13.06 21.65 0.28 -57.29 16 24 Si 0.97 45.18 29.55 68.60 2.03 47.20 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 2.27 8.04 -2.39 -0.02 2.25 16 32 H 0.08 2.36 8.03 -2.39 -0.02 2.34 16 33 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.24 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.21 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 2.34 7.55 -2.38 -0.02 2.32 16 37 H 0.05 2.15 7.78 -2.39 -0.02 2.13 16 38 H 0.38 19.69 7.76 -92.71 -0.72 18.97 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -72.31 342.65 4.09 -68.23 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.37 Total: 24.89 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 6.07 Total: 22.27 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -5.86 Total: -135.17 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 1.54 Total: -5.62 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.31 4.09 -68.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054716669.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.026 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds