Wall clock time and date at job start Tue Mar 31 2020 10:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 110.91184 * 2 1 4 4 C 1.54909 * 111.00505 * 236.10040 * 2 1 3 5 5 N 1.47427 * 104.82916 * 204.91452 * 4 2 1 6 6 C 1.34778 * 125.64711 * 204.08816 * 5 4 2 7 7 O 1.21567 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.47709 * 120.00082 * 179.97438 * 6 5 4 9 9 C 1.41494 * 126.51967 * 179.97438 * 8 6 5 10 10 C 1.35367 * 105.50551 * 179.97438 * 9 8 6 11 11 N 1.35032 * 107.22544 * 0.26675 * 10 9 8 12 12 C 1.46499 * 124.88382 * 179.69921 * 11 10 9 13 13 F 1.39908 * 109.47231 * 299.99909 * 12 11 10 14 14 F 1.39894 * 109.47374 * 60.00006 * 12 11 10 15 15 N 1.28473 * 110.23186 * 359.54546 * 11 10 9 16 16 C 1.47020 * 108.70474 * 24.35544 * 5 4 2 17 17 C 1.54337 * 107.26380 * 358.58407 * 16 5 4 18 18 H 1.09004 * 110.85165 * 219.67180 * 17 16 5 19 19 N 1.46495 * 110.66633 * 96.52659 * 17 16 5 20 20 C 1.36938 * 120.00407 * 91.41472 * 19 17 16 21 21 H 1.08002 * 119.99887 * 359.97438 * 20 19 17 22 22 C 1.38816 * 120.00039 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99467 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00139 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46858 * 90.00450 * 24 22 20 26 26 H 1.48499 * 109.46952 * 210.00273 * 24 22 20 27 27 H 1.48497 * 109.47107 * 330.00418 * 24 22 20 28 28 H 1.08996 * 109.46731 * 182.44721 * 1 2 3 29 29 H 1.08992 * 109.47135 * 302.44897 * 1 2 3 30 30 H 1.09002 * 109.47023 * 62.44873 * 1 2 3 31 31 H 1.08997 * 110.37147 * 86.07639 * 4 2 1 32 32 H 1.09001 * 110.36841 * 323.75047 * 4 2 1 33 33 H 1.08008 * 127.24784 * 0.02944 * 9 8 6 34 34 H 1.08002 * 126.38433 * 179.97438 * 10 9 8 35 35 H 1.08996 * 109.47121 * 180.02562 * 12 11 10 36 36 H 1.08995 * 109.88672 * 118.12789 * 16 5 4 37 37 H 1.08999 * 109.88068 * 239.29578 * 16 5 4 38 38 H 0.97005 * 119.99762 * 271.41069 * 19 17 16 39 39 H 0.97000 * 119.99658 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7733 6 6 4.4478 -1.5615 -1.5940 7 8 4.3007 -1.4997 -2.7991 8 6 5.7454 -1.9846 -1.0291 9 6 6.9024 -2.3486 -1.7577 10 6 7.8345 -2.6576 -0.8260 11 7 7.2599 -2.4920 0.3847 12 6 7.9263 -2.7282 1.6678 13 9 8.3389 -4.0631 1.7403 14 9 9.0405 -1.8892 1.7760 15 7 6.0457 -2.0945 0.2496 16 6 3.4658 -1.2793 0.6959 17 6 2.0862 -0.8078 1.2022 18 1 2.1921 -0.1698 2.0796 19 7 1.2247 -1.9549 1.4989 20 6 1.2043 -2.4880 2.7601 21 1 1.8237 -2.0629 3.5360 22 6 0.3883 -3.5753 3.0410 23 7 0.3692 -4.0879 4.2531 24 14 -0.6825 -4.3109 1.6988 25 1 0.0725 -5.3763 0.9915 26 1 -1.9073 -4.8916 2.3053 27 1 -1.0638 -3.2497 0.7325 28 1 -0.3632 -1.0267 0.0439 29 1 -0.3633 0.5513 0.8671 30 1 -0.3633 0.4753 -0.9111 31 1 2.1561 -0.1720 -2.0837 32 1 1.4520 -1.6704 -1.4025 33 1 7.0179 -2.3736 -2.8313 34 1 8.8472 -2.9813 -1.0157 35 1 7.2324 -2.5181 2.4817 36 1 3.6602 -2.2962 1.0367 37 1 4.2425 -0.6083 1.0630 38 1 0.6686 -2.3369 0.8019 39 1 -0.2012 -4.8474 4.4496 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054716674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:35 Heat of formation + Delta-G solvation = -37.728918 kcal Electronic energy + Delta-G solvation = -26640.070148 eV Core-core repulsion = 22448.774647 eV Total energy + Delta-G solvation = -4191.295501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.48885 -48.57065 -43.78684 -41.05339 -39.06171 -35.83020 -34.33535 -33.72549 -32.62965 -31.91058 -29.69127 -28.45487 -26.93677 -25.53919 -24.37377 -23.07426 -22.61593 -20.87523 -20.47518 -19.80491 -19.62705 -19.06756 -18.54411 -18.07641 -17.39343 -16.87396 -16.58706 -16.09896 -15.92541 -15.58623 -15.35976 -15.28567 -14.89153 -14.79751 -14.63205 -14.55264 -14.35403 -14.17057 -13.59604 -13.54423 -13.22054 -13.19323 -13.05168 -12.87141 -12.33122 -12.18888 -12.05984 -11.92020 -11.58553 -11.49198 -11.31277 -10.98655 -10.77313 -10.39366 -9.72330 -9.30814 -8.00090 -5.32074 0.23009 0.64805 0.93567 1.36364 1.38822 1.45121 1.89275 2.20612 2.41993 2.48500 2.98009 3.30508 3.31920 3.46794 3.57424 3.62170 3.67895 3.86457 3.96953 4.04393 4.39450 4.48337 4.54696 4.62334 4.64119 4.67519 4.85150 4.95027 5.00593 5.04436 5.22791 5.25308 5.32552 5.40463 5.52476 5.82210 6.24003 6.35895 6.51102 6.97828 7.09812 7.85557 8.03130 9.20977 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.004610 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.764170 B = 6072.471827 C = 7428.173846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 H 0.113 0.887 4 C 0.110 3.890 5 N -0.598 5.598 6 C 0.608 3.392 7 O -0.568 6.568 8 C -0.013 4.013 9 C -0.182 4.182 10 C 0.011 3.989 11 N -0.350 5.350 12 C 0.498 3.502 13 F -0.177 7.177 14 F -0.173 7.173 15 N -0.250 5.250 16 C 0.097 3.903 17 C 0.166 3.834 18 H 0.086 0.914 19 N -0.738 5.738 20 C -0.218 4.218 21 H 0.069 0.931 22 C -0.056 4.056 23 N -0.980 5.980 24 Si 0.935 3.065 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.248 1.248 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.180 0.820 34 H 0.224 0.776 35 H 0.197 0.803 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.364 0.636 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.157 7.616 -9.407 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 H 0.131 0.869 4 C -0.012 4.012 5 N -0.329 5.329 6 C 0.396 3.604 7 O -0.447 6.447 8 C -0.175 4.175 9 C -0.209 4.209 10 C -0.129 4.129 11 N -0.147 5.147 12 C 0.366 3.634 13 F -0.159 7.159 14 F -0.154 7.154 15 N -0.083 5.083 16 C -0.028 4.028 17 C 0.056 3.944 18 H 0.104 0.896 19 N -0.380 5.380 20 C -0.349 4.349 21 H 0.087 0.913 22 C -0.248 4.248 23 N -0.631 5.631 24 Si 0.764 3.236 25 H -0.219 1.219 26 H -0.224 1.224 27 H -0.172 1.172 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.197 0.803 34 H 0.240 0.760 35 H 0.213 0.787 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.198 0.802 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.849 7.698 -8.625 18.819 hybrid contribution -0.192 -1.329 -1.140 1.761 sum 14.657 6.369 -9.765 18.728 Atomic orbital electron populations 1.21574 0.93068 1.01665 1.02633 1.22657 0.97090 0.99588 0.92747 0.86865 1.22420 0.81739 0.98367 0.98683 1.48386 1.12020 1.64232 1.08271 1.16731 0.81754 0.77063 0.84874 1.90745 1.83119 1.56288 1.14566 1.22051 0.96735 1.08604 0.90142 1.22094 0.90689 1.06146 1.02007 1.23545 1.02339 1.03855 0.83181 1.46927 1.09261 1.50089 1.08441 1.21547 0.83232 0.72919 0.85682 1.93155 1.91516 1.35480 1.95710 1.93150 1.55657 1.71246 1.95361 1.73706 0.97704 1.16229 1.20709 1.22962 1.00291 1.01802 0.77758 1.21476 0.87914 0.88216 0.96812 0.89561 1.42789 1.50396 1.36029 1.08830 1.19048 1.19110 1.09005 0.87732 0.91297 1.25292 1.01982 0.99610 0.97910 1.69843 1.44590 1.27571 1.21100 0.85716 0.78791 0.79032 0.80043 1.21854 1.22441 1.17230 0.94173 0.91773 0.90536 0.89328 0.92511 0.80277 0.75951 0.78688 0.92591 0.90153 0.80155 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.98 71.98 0.65 -2.76 16 2 C -0.10 -2.66 3.52 -9.40 -0.03 -2.70 16 3 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 4 C 0.11 3.19 6.34 86.85 0.55 3.74 16 5 N -0.60 -19.34 3.33 -815.33 -2.71 -22.05 16 6 C 0.61 20.74 7.86 86.75 0.68 21.42 16 7 O -0.57 -21.60 17.18 -3.93 -0.07 -21.67 16 8 C -0.01 -0.38 6.98 42.45 0.30 -0.08 16 9 C -0.18 -4.27 10.81 22.41 0.24 -4.03 16 10 C 0.01 0.19 11.33 83.54 0.95 1.14 16 11 N -0.35 -7.52 3.56 -364.69 -1.30 -8.82 16 12 C 0.50 7.74 6.24 127.77 0.80 8.54 16 13 F -0.18 -3.09 17.46 44.97 0.79 -2.30 16 14 F -0.17 -2.62 17.46 44.97 0.79 -1.84 16 15 N -0.25 -6.93 9.50 -48.18 -0.46 -7.38 16 16 C 0.10 3.16 5.28 86.73 0.46 3.62 16 17 C 0.17 5.54 3.39 46.18 0.16 5.69 16 18 H 0.09 2.84 8.09 -2.38 -0.02 2.82 16 19 N -0.74 -31.45 4.26 -317.32 -1.35 -32.80 16 20 C -0.22 -11.49 10.44 84.03 0.88 -10.61 16 21 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 22 C -0.06 -3.18 5.50 84.86 0.47 -2.72 16 23 N -0.98 -60.79 13.97 21.65 0.30 -60.49 16 24 Si 0.94 44.64 27.74 68.60 1.90 46.54 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 27 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 28 H 0.04 1.24 6.26 -2.39 -0.01 1.22 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 2.36 8.04 -2.39 -0.02 2.34 16 32 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 33 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.22 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.20 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.16 7.69 -2.39 -0.02 2.14 16 37 H 0.08 2.36 7.64 -2.39 -0.02 2.34 16 38 H 0.36 15.50 4.10 -92.70 -0.38 15.12 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -71.57 336.76 4.63 -66.95 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.65 Total: 22.61 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 6.09 Total: 21.25 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -5.52 Total: -131.55 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.07 Total: -21.67 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 1.57 Total: -4.14 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Total: -71.57 4.63 -66.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054716674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.217 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds