Wall clock time and date at job start Tue Mar 31 2020 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00140 * 2 1 4 4 C 1.53000 * 109.47421 * 264.67883 * 3 2 1 5 5 H 1.09007 * 112.96691 * 293.74612 * 4 3 2 6 6 C 1.53946 * 113.77127 * 65.42277 * 4 3 2 7 7 C 1.53935 * 86.29144 * 137.91007 * 6 4 3 8 8 N 1.47576 * 113.77229 * 162.06689 * 4 3 2 9 9 C 1.36936 * 134.49460 * 41.06670 * 8 4 3 10 10 H 1.07997 * 119.99862 * 342.01029 * 9 8 4 11 11 C 1.38810 * 120.00144 * 162.00593 * 9 8 4 12 12 N 1.31621 * 119.99768 * 167.37328 * 11 9 8 13 13 Si 1.86798 * 120.00251 * 347.38180 * 11 9 8 14 14 H 1.48494 * 109.47331 * 84.85397 * 13 11 9 15 15 H 1.48500 * 109.47357 * 204.85904 * 13 11 9 16 16 H 1.48501 * 109.46729 * 324.85426 * 13 11 9 17 17 C 1.34777 * 119.99984 * 180.02562 * 2 1 3 18 18 O 1.21566 * 120.00267 * 183.44274 * 17 2 1 19 19 C 1.47712 * 119.99773 * 3.44439 * 17 2 1 20 20 C 1.41508 * 126.51573 * 173.16852 * 19 17 2 21 21 C 1.35366 * 105.49868 * 180.14721 * 20 19 17 22 22 C 1.50696 * 126.38143 * 179.86380 * 21 20 19 23 23 F 1.39907 * 109.47405 * 59.71373 * 22 21 20 24 24 F 1.39898 * 109.47421 * 299.71390 * 22 21 20 25 25 N 1.35028 * 107.23090 * 359.60195 * 21 20 19 26 26 H 0.97001 * 124.88709 * 180.28605 * 25 21 20 27 27 N 1.28471 * 110.23339 * 0.26211 * 25 21 20 28 28 H 1.08999 * 109.46792 * 264.35041 * 1 2 3 29 29 H 1.09000 * 109.46847 * 24.34313 * 1 2 3 30 30 H 1.08998 * 109.47589 * 144.34708 * 1 2 3 31 31 H 1.08997 * 109.47203 * 24.67492 * 3 2 1 32 32 H 1.09004 * 109.47007 * 144.68045 * 3 2 1 33 33 H 1.09003 * 113.74279 * 252.25718 * 6 4 3 34 34 H 1.09006 * 113.73807 * 23.45252 * 6 4 3 35 35 H 1.09000 * 113.77420 * 90.69889 * 7 6 4 36 36 H 1.09007 * 113.77106 * 221.98331 * 7 6 4 37 37 H 0.97008 * 120.00088 * 179.97438 * 12 11 9 38 38 H 1.07997 * 127.25188 * 0.02562 * 20 19 17 39 39 H 1.09003 * 109.47135 * 179.70825 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5684 1.6435 -1.4363 5 1 3.2840 0.9541 -1.8845 6 6 1.3535 1.9460 -2.3321 7 6 2.1773 3.1252 -2.8802 8 7 2.9254 3.0653 -1.6067 9 6 3.6552 3.9657 -0.8774 10 1 3.8686 3.7710 0.1632 11 6 4.1208 5.1285 -1.4757 12 7 4.6007 6.1037 -0.7335 13 14 4.0660 5.3093 -3.3341 14 1 2.7260 5.8004 -3.7444 15 1 5.1030 6.2796 -3.7679 16 1 4.3254 3.9914 -3.9674 17 6 2.1388 -1.1672 -0.0005 18 8 3.3529 -1.1682 0.0627 19 6 1.4022 -2.4452 -0.0780 20 6 1.9664 -3.7348 -0.2235 21 6 0.9160 -4.5882 -0.2498 22 6 0.9852 -6.0868 -0.3929 23 9 1.7278 -6.6226 0.6649 24 9 1.6012 -6.4114 -1.6063 25 7 -0.2050 -3.8471 -0.1179 26 1 -1.1069 -4.2036 -0.1001 27 7 0.0948 -2.6018 -0.0190 28 1 -0.3633 -0.1012 1.0227 29 1 -0.3633 0.9363 -0.4236 30 1 -0.3634 -0.8350 -0.5990 31 1 1.5705 2.0503 0.4290 32 1 3.1054 1.1641 0.5942 33 1 1.1499 1.1715 -3.0717 34 1 0.4647 2.2490 -1.7785 35 1 2.7790 2.8726 -3.7533 36 1 1.6005 4.0407 -3.0116 37 1 4.9264 6.9162 -1.1515 38 1 3.0142 -3.9851 -0.2997 39 1 -0.0231 -6.5005 -0.3751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085813028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:46 Heat of formation + Delta-G solvation = -6.231168 kcal Electronic energy + Delta-G solvation = -25982.935963 eV Core-core repulsion = 21793.006306 eV Total energy + Delta-G solvation = -4189.929656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.04364 -48.06965 -43.93304 -40.97524 -39.64338 -36.59276 -34.40638 -33.42769 -32.90800 -30.51918 -30.08743 -27.62873 -27.25386 -25.72760 -24.93801 -23.57808 -22.53819 -21.18092 -20.42257 -19.55998 -18.83409 -18.37113 -18.20542 -18.12350 -17.53253 -17.15745 -16.95948 -16.42767 -16.23128 -15.69907 -15.34115 -14.95899 -14.92035 -14.87352 -14.55533 -14.42348 -14.21767 -13.96390 -13.84943 -13.77156 -13.53537 -13.18745 -12.76328 -12.55557 -12.41584 -12.01180 -11.89753 -11.80634 -11.73192 -11.33431 -11.24606 -10.93798 -10.66612 -10.51520 -9.72460 -9.08602 -8.14381 -5.45866 0.29859 0.65923 1.28599 1.36453 1.43335 1.48596 1.84833 2.19292 2.41824 2.68514 3.01390 3.11600 3.14749 3.15790 3.48592 3.68962 3.91464 3.91969 4.14273 4.20214 4.24451 4.36230 4.42367 4.51734 4.57037 4.69431 4.78388 4.85712 4.91245 4.96932 4.98409 5.09230 5.25004 5.46561 5.56733 5.83076 6.17005 6.30993 6.53680 6.57784 7.03746 7.44645 8.26211 9.06849 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.002774 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.007238 B =10091.401456 C =10147.881071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.589 5.589 3 C 0.133 3.867 4 C 0.126 3.874 5 H 0.034 0.966 6 C -0.109 4.109 7 C 0.086 3.914 8 N -0.641 5.641 9 C -0.215 4.215 10 H 0.063 0.937 11 C -0.047 4.047 12 N -0.970 5.970 13 Si 0.949 3.051 14 H -0.266 1.266 15 H -0.307 1.307 16 H -0.264 1.264 17 C 0.587 3.413 18 O -0.576 6.576 19 C -0.027 4.027 20 C -0.153 4.153 21 C -0.058 4.058 22 C 0.352 3.648 23 F -0.200 7.200 24 F -0.200 7.200 25 N -0.331 5.331 26 H 0.472 0.528 27 N -0.218 5.218 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.261 0.739 38 H 0.157 0.843 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.928 -28.144 -1.119 34.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.320 5.320 3 C 0.009 3.991 4 C 0.019 3.981 5 H 0.052 0.948 6 C -0.147 4.147 7 C -0.038 4.038 8 N -0.369 5.369 9 C -0.343 4.343 10 H 0.081 0.919 11 C -0.240 4.240 12 N -0.618 5.618 13 Si 0.777 3.223 14 H -0.192 1.192 15 H -0.235 1.235 16 H -0.189 1.189 17 C 0.375 3.625 18 O -0.454 6.454 19 C -0.185 4.185 20 C -0.182 4.182 21 C -0.185 4.185 22 C 0.298 3.702 23 F -0.182 7.182 24 F -0.181 7.181 25 N -0.051 5.051 26 H 0.324 0.676 27 N -0.057 5.057 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.174 0.826 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -20.054 -27.240 -0.853 33.837 hybrid contribution 1.603 0.248 -0.625 1.738 sum -18.451 -26.993 -1.477 32.729 Atomic orbital electron populations 1.22390 0.76050 1.04974 1.03480 1.47684 1.08967 1.04291 1.71051 1.21369 0.96578 0.84256 0.96892 1.22671 0.94820 0.85486 0.95085 0.94795 1.23406 0.96423 0.96604 0.98245 1.23019 0.92772 0.98905 0.89119 1.46804 1.60073 1.06685 1.23377 1.18666 1.25525 0.97659 0.92487 0.91885 1.25646 0.99560 0.96704 1.02111 1.69890 1.48662 1.06968 1.36314 0.85766 0.77468 0.77224 0.81825 1.19212 1.23499 1.18918 1.17388 0.85898 0.82838 0.76424 1.90808 1.15026 1.87263 1.52342 1.21596 0.90368 0.94435 1.12082 1.21736 1.01049 0.90621 1.04746 1.21922 0.88033 0.96278 1.12282 1.19935 0.94914 0.84388 0.71012 1.93059 1.80689 1.86653 1.57773 1.93058 1.86185 1.93004 1.45892 1.43367 1.09962 1.02472 1.49290 0.67647 1.73751 1.14890 0.99835 1.17264 0.91484 0.89559 0.87819 0.88786 0.93481 0.89193 0.87724 0.93865 0.92408 0.93027 0.82565 0.79657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.41 9.34 127.77 1.19 2.60 16 2 N -0.59 -17.28 2.78 -850.37 -2.36 -19.64 16 3 C 0.13 4.90 5.27 86.38 0.45 5.35 16 4 C 0.13 5.07 4.54 45.09 0.20 5.27 16 5 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 6 C -0.11 -3.40 7.30 31.25 0.23 -3.17 16 7 C 0.09 3.50 5.80 86.43 0.50 4.00 16 8 N -0.64 -31.55 3.33 -690.96 -2.30 -33.85 16 9 C -0.22 -12.83 10.94 84.03 0.92 -11.91 16 10 H 0.06 4.08 8.06 -2.91 -0.02 4.06 16 11 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 12 N -0.97 -63.50 13.97 21.65 0.30 -63.20 16 13 Si 0.95 48.33 25.14 68.60 1.72 50.06 16 14 H -0.27 -12.60 6.88 99.48 0.68 -11.92 16 15 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 16 H -0.26 -12.96 6.02 99.48 0.60 -12.36 16 17 C 0.59 19.24 7.64 86.75 0.66 19.90 16 18 O -0.58 -24.26 16.58 -3.92 -0.07 -24.33 16 19 C -0.03 -0.67 6.81 42.46 0.29 -0.38 16 20 C -0.15 -3.32 10.74 22.41 0.24 -3.08 16 21 C -0.06 -0.70 6.66 41.40 0.28 -0.43 16 22 C 0.35 2.43 5.79 71.23 0.41 2.85 16 23 F -0.20 -2.57 17.32 44.97 0.78 -1.79 16 24 F -0.20 -2.56 17.32 44.97 0.78 -1.78 16 25 N -0.33 -2.67 6.83 -47.93 -0.33 -3.00 16 26 H 0.47 -1.20 8.96 -219.99 -1.97 -3.17 16 27 N -0.22 -3.55 8.77 -48.17 -0.42 -3.97 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.48 6.63 -2.39 -0.02 1.46 16 30 H 0.10 1.72 5.35 -2.39 -0.01 1.71 16 31 H 0.09 3.32 8.03 -2.39 -0.02 3.31 16 32 H 0.05 2.05 7.54 -2.38 -0.02 2.03 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.10 2.78 6.91 -2.38 -0.02 2.77 16 35 H 0.04 1.78 6.60 -2.39 -0.02 1.77 16 36 H 0.06 2.35 7.09 -2.38 -0.02 2.33 16 37 H 0.26 16.23 8.31 -92.70 -0.77 15.46 16 38 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.19 -0.98 8.14 -2.39 -0.02 -1.00 16 Total: -1.00 -86.00 332.49 2.96 -83.04 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -0.99 Total: -0.11 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 5.85 Total: 18.57 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -5.11 Total: -123.66 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.07 Total: -24.33 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 1.56 Total: -3.57 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.72 Total: 50.06 kcal Total: -86.00 2.96 -83.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085813028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.808 kcal (2) G-P(sol) polarization free energy of solvation -86.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds