Wall clock time and date at job start Tue Mar 31 2020 10:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00369 * 2 1 4 4 C 1.38211 * 120.00204 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.00007 * 359.76914 * 4 3 2 6 6 C 1.38214 * 119.99940 * 0.45974 * 5 4 3 7 7 C 1.50701 * 120.00347 * 179.79087 * 6 5 4 8 8 C 1.52996 * 109.46972 * 269.73239 * 7 6 5 9 9 C 1.50696 * 109.47298 * 179.97438 * 8 7 6 10 10 O 1.20833 * 119.99655 * 359.97438 * 9 8 7 11 11 O 1.34222 * 120.00432 * 180.27351 * 9 8 7 12 12 C 1.45201 * 117.00137 * 179.71953 * 11 9 8 13 13 H 1.08993 * 109.47491 * 330.00073 * 12 11 9 14 14 C 1.50706 * 109.46887 * 90.00045 * 12 11 9 15 15 H 1.08001 * 119.99914 * 239.99856 * 14 12 11 16 16 C 1.37878 * 119.99966 * 60.00384 * 14 12 11 17 17 N 1.31520 * 119.99989 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00079 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46788 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47287 * 119.99140 * 18 16 14 21 21 H 1.48496 * 109.47359 * 239.99732 * 18 16 14 22 22 C 1.50704 * 109.46907 * 209.99697 * 12 11 9 23 23 C 1.34516 * 125.78433 * 145.00355 * 22 12 11 24 24 C 1.41385 * 106.84086 * 179.97438 * 23 22 12 25 25 C 1.34521 * 106.83744 * 0.02562 * 24 23 22 26 26 O 1.34299 * 125.79250 * 324.69650 * 22 12 11 27 27 C 1.38217 * 120.00010 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47253 * 270.02287 * 1 2 3 29 29 H 1.09000 * 109.47205 * 30.02133 * 1 2 3 30 30 H 1.08999 * 109.47226 * 150.02394 * 1 2 3 31 31 H 1.07997 * 119.99830 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99798 * 179.97438 * 4 3 2 33 33 H 1.07995 * 120.00003 * 180.25670 * 5 4 3 34 34 H 1.08994 * 109.47178 * 149.72816 * 7 6 5 35 35 H 1.09006 * 109.46629 * 29.72619 * 7 6 5 36 36 H 1.09000 * 109.47764 * 59.99413 * 8 7 6 37 37 H 1.09006 * 109.46938 * 299.99191 * 8 7 6 38 38 H 0.97003 * 119.99499 * 180.02562 * 17 16 14 39 39 H 1.07996 * 126.58313 * 0.03006 * 23 22 12 40 40 H 1.07992 * 126.58013 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.78786 * 180.02562 * 25 24 23 42 42 H 1.07999 * 119.99794 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0038 6 6 3.5806 -1.1971 -0.0010 7 6 4.3340 -2.5022 -0.0011 8 6 4.5881 -2.9443 -1.4436 9 6 5.3420 -4.2491 -1.4438 10 8 5.6454 -4.7716 -0.3974 11 8 5.6816 -4.8279 -2.6062 12 6 6.4123 -6.0804 -2.5303 13 1 7.0143 -6.0954 -1.6219 14 6 5.4378 -7.2297 -2.5061 15 1 5.4228 -7.9073 -1.6653 16 6 4.5655 -7.4162 -3.5575 17 7 4.5836 -6.5907 -4.5813 18 14 3.3581 -8.8412 -3.5279 19 1 3.5389 -9.6172 -2.2747 20 1 1.9706 -8.3157 -3.5893 21 1 3.6054 -9.7239 -4.6962 22 6 7.3126 -6.2103 -3.7319 23 6 8.5303 -6.7817 -3.7442 24 6 9.0144 -6.6857 -5.0691 25 6 8.0637 -6.0609 -5.7870 26 8 7.0329 -5.7805 -4.9731 27 6 2.1980 -1.1970 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6584 2.1326 -0.0004 32 1 4.1204 2.1326 -0.0010 33 1 5.3517 -0.0001 0.0075 34 1 3.7453 -3.2616 0.5134 35 1 5.2869 -2.3717 0.5120 36 1 5.1768 -2.1849 -1.9582 37 1 3.6352 -3.0749 -1.9567 38 1 3.9696 -6.7218 -5.3207 39 1 9.0401 -7.2288 -2.9036 40 1 9.9653 -7.0443 -5.4345 41 1 8.1180 -5.8289 -6.8404 42 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:10 Heat of formation + Delta-G solvation = -58.996727 kcal Electronic energy + Delta-G solvation = -25193.037747 eV Core-core repulsion = 21490.464032 eV Total energy + Delta-G solvation = -3702.573715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30788 -39.65297 -39.03073 -35.64778 -34.16366 -32.93623 -32.33184 -31.82968 -30.16241 -29.48731 -26.99597 -26.54268 -24.90553 -23.02490 -22.03296 -20.78097 -20.40081 -19.56930 -19.37769 -17.13508 -16.65042 -16.43379 -16.19403 -15.72959 -15.19212 -14.94840 -14.78560 -14.55523 -14.43077 -13.89163 -13.46718 -13.18906 -13.09484 -12.84718 -12.60586 -12.39514 -12.23359 -11.85922 -11.77646 -11.66848 -11.36888 -11.32229 -11.21538 -11.06048 -10.98606 -10.88104 -10.67978 -10.33766 -9.82837 -9.49598 -9.05866 -8.83823 -8.79515 -8.75518 -8.58316 -7.33697 -6.22460 -4.44341 1.32446 1.37295 2.91683 3.18112 3.26425 3.28373 3.32494 3.56750 3.69623 3.97598 4.25217 4.27187 4.74907 4.78204 4.90880 5.09490 5.12615 5.24488 5.31552 5.34595 5.46223 5.49209 5.60273 5.68679 5.73024 5.83104 5.93413 5.98638 6.01916 6.06381 6.17917 6.34465 6.39486 6.45044 6.48792 6.54923 6.69352 6.81185 6.90649 7.00961 7.21185 7.49129 7.62696 7.79967 7.82939 8.41706 8.59500 8.99980 9.29737 10.76665 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003338 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.112048 B = 8385.585495 C = 9428.818825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.070 4.070 7 C -0.069 4.069 8 C -0.109 4.109 9 C 0.459 3.541 10 O -0.533 6.533 11 O -0.335 6.335 12 C 0.278 3.722 13 H 0.071 0.929 14 C -0.548 4.548 15 H 0.074 0.926 16 C 0.080 3.920 17 N -0.827 5.827 18 Si 0.896 3.104 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.082 3.918 23 C -0.265 4.265 24 C -0.221 4.221 25 C -0.082 4.082 26 O -0.116 6.116 27 C -0.116 4.116 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.267 0.733 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.183 0.817 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 12.796 4.345 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.140 4.140 6 C -0.070 4.070 7 C -0.106 4.106 8 C -0.147 4.147 9 C 0.302 3.698 10 O -0.425 6.425 11 O -0.250 6.250 12 C 0.226 3.774 13 H 0.088 0.912 14 C -0.584 4.584 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.460 5.460 18 Si 0.723 3.277 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.028 3.972 23 C -0.284 4.284 24 C -0.241 4.241 25 C -0.151 4.151 26 O -0.008 6.008 27 C -0.134 4.134 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.200 0.800 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.104 12.805 4.327 13.868 hybrid contribution -0.365 -1.093 -0.264 1.183 sum -3.469 11.711 4.063 12.872 Atomic orbital electron populations 1.20791 0.91354 1.02780 1.02184 1.19909 0.95985 0.93188 0.99633 1.20977 0.94300 0.97310 1.02158 1.21098 0.94268 0.97890 1.00182 1.21085 0.99969 0.91953 1.01002 1.19938 0.93701 0.95063 0.98342 1.20412 1.00817 0.93466 0.95945 1.21278 1.01751 0.93656 0.97980 1.23183 0.77527 0.86032 0.83034 1.90544 1.53291 1.65041 1.33612 1.86724 1.66937 1.38908 1.32429 1.18786 0.89342 0.81137 0.88116 0.91154 1.21294 1.19031 1.11940 1.06166 0.90752 1.25163 0.96976 0.96117 0.94772 1.70068 1.34548 1.34559 1.06784 0.86458 0.80690 0.82068 0.78518 1.19255 1.20507 1.20560 1.22841 0.92773 0.96809 0.84779 1.21165 0.97004 1.12138 0.98126 1.21498 1.01028 1.07192 0.94376 1.23792 0.88264 1.06304 0.96786 1.84416 1.37363 1.61494 1.17541 1.21017 0.93675 0.97724 1.00954 0.91315 0.91704 0.91414 0.86461 0.86242 0.86000 0.89988 0.90152 0.88641 0.88262 0.92348 0.84943 0.85160 0.80031 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.09 -0.96 5.88 -104.62 -0.62 -1.58 16 3 C -0.13 -1.34 9.70 -39.58 -0.38 -1.73 16 4 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 5 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 6 C -0.07 -0.91 5.13 -104.62 -0.54 -1.44 16 7 C -0.07 -0.99 4.64 -27.88 -0.13 -1.12 16 8 C -0.11 -1.79 5.79 -27.89 -0.16 -1.95 16 9 C 0.46 10.02 7.92 36.00 0.29 10.30 16 10 O -0.53 -12.58 15.20 -18.76 -0.29 -12.87 16 11 O -0.34 -8.42 9.25 -41.99 -0.39 -8.81 16 12 C 0.28 7.22 2.58 -29.03 -0.07 7.15 16 13 H 0.07 1.79 7.15 -51.93 -0.37 1.42 16 14 C -0.55 -15.10 8.91 -34.44 -0.31 -15.40 16 15 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 16 C 0.08 2.17 5.24 -17.82 -0.09 2.07 16 17 N -0.83 -22.76 10.62 55.43 0.59 -22.17 16 18 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.08 2.04 5.59 -35.62 -0.20 1.84 16 23 C -0.27 -5.91 10.81 -39.70 -0.43 -6.34 16 24 C -0.22 -4.41 10.91 -39.70 -0.43 -4.85 16 25 C -0.08 -1.68 12.09 29.42 0.36 -1.33 16 26 O -0.12 -2.90 8.87 2.21 0.02 -2.88 16 27 C -0.12 -1.43 9.36 -39.58 -0.37 -1.80 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 35 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 36 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 39 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 40 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.18 2.92 8.06 -52.49 -0.42 2.49 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -31.47 365.47 -8.91 -40.38 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.82 Total: 5.30 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -3.51 Total: -20.22 kcal Atomic # 7 Polarization: -22.76 SS G_CDS: 0.59 Total: -22.17 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.65 Total: -24.56 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.47 -8.91 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.617 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds