Wall clock time and date at job start Tue Mar 31 2020 10:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00369 * 2 1 4 4 C 1.38211 * 120.00204 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.00007 * 359.76914 * 4 3 2 6 6 C 1.38214 * 119.99940 * 0.45974 * 5 4 3 7 7 C 1.50701 * 120.00347 * 179.79087 * 6 5 4 8 8 C 1.52996 * 109.46972 * 269.73239 * 7 6 5 9 9 C 1.50696 * 109.47298 * 179.97438 * 8 7 6 10 10 O 1.20833 * 119.99655 * 359.97438 * 9 8 7 11 11 O 1.34222 * 120.00432 * 180.27351 * 9 8 7 12 12 C 1.45201 * 117.00137 * 179.71953 * 11 9 8 13 13 H 1.08993 * 109.47491 * 330.00073 * 12 11 9 14 14 C 1.50706 * 109.46887 * 90.00045 * 12 11 9 15 15 H 1.08001 * 119.99914 * 239.99856 * 14 12 11 16 16 C 1.37878 * 119.99966 * 60.00384 * 14 12 11 17 17 N 1.31520 * 119.99989 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00079 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46788 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47287 * 119.99140 * 18 16 14 21 21 H 1.48496 * 109.47359 * 239.99732 * 18 16 14 22 22 C 1.50704 * 109.46907 * 209.99697 * 12 11 9 23 23 C 1.34516 * 125.78433 * 145.00355 * 22 12 11 24 24 C 1.41385 * 106.84086 * 179.97438 * 23 22 12 25 25 C 1.34521 * 106.83744 * 0.02562 * 24 23 22 26 26 O 1.34299 * 125.79250 * 324.69650 * 22 12 11 27 27 C 1.38217 * 120.00010 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47253 * 270.02287 * 1 2 3 29 29 H 1.09000 * 109.47205 * 30.02133 * 1 2 3 30 30 H 1.08999 * 109.47226 * 150.02394 * 1 2 3 31 31 H 1.07997 * 119.99830 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99798 * 179.97438 * 4 3 2 33 33 H 1.07995 * 120.00003 * 180.25670 * 5 4 3 34 34 H 1.08994 * 109.47178 * 149.72816 * 7 6 5 35 35 H 1.09006 * 109.46629 * 29.72619 * 7 6 5 36 36 H 1.09000 * 109.47764 * 59.99413 * 8 7 6 37 37 H 1.09006 * 109.46938 * 299.99191 * 8 7 6 38 38 H 0.97003 * 119.99499 * 180.02562 * 17 16 14 39 39 H 1.07996 * 126.58313 * 0.03006 * 23 22 12 40 40 H 1.07992 * 126.58013 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.78786 * 180.02562 * 25 24 23 42 42 H 1.07999 * 119.99794 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0038 6 6 3.5806 -1.1971 -0.0010 7 6 4.3340 -2.5022 -0.0011 8 6 4.5881 -2.9443 -1.4436 9 6 5.3420 -4.2491 -1.4438 10 8 5.6454 -4.7716 -0.3974 11 8 5.6816 -4.8279 -2.6062 12 6 6.4123 -6.0804 -2.5303 13 1 7.0143 -6.0954 -1.6219 14 6 5.4378 -7.2297 -2.5061 15 1 5.4228 -7.9073 -1.6653 16 6 4.5655 -7.4162 -3.5575 17 7 4.5836 -6.5907 -4.5813 18 14 3.3581 -8.8412 -3.5279 19 1 3.5389 -9.6172 -2.2747 20 1 1.9706 -8.3157 -3.5893 21 1 3.6054 -9.7239 -4.6962 22 6 7.3126 -6.2103 -3.7319 23 6 8.5303 -6.7817 -3.7442 24 6 9.0144 -6.6857 -5.0691 25 6 8.0637 -6.0609 -5.7870 26 8 7.0329 -5.7805 -4.9731 27 6 2.1980 -1.1970 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6584 2.1326 -0.0004 32 1 4.1204 2.1326 -0.0010 33 1 5.3517 -0.0001 0.0075 34 1 3.7453 -3.2616 0.5134 35 1 5.2869 -2.3717 0.5120 36 1 5.1768 -2.1849 -1.9582 37 1 3.6352 -3.0749 -1.9567 38 1 3.9696 -6.7218 -5.3207 39 1 9.0401 -7.2288 -2.9036 40 1 9.9653 -7.0443 -5.4345 41 1 8.1180 -5.8289 -6.8404 42 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:09 Heat of formation + Delta-G solvation = -73.383420 kcal Electronic energy + Delta-G solvation = -25193.661601 eV Core-core repulsion = 21490.464032 eV Total energy + Delta-G solvation = -3703.197569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.04389 -41.11575 -40.25541 -37.45641 -35.33518 -34.93320 -33.57100 -33.19502 -31.80707 -30.78496 -28.41207 -27.75178 -26.28133 -24.79335 -22.93107 -22.39543 -21.66082 -21.21332 -20.94277 -19.02505 -18.30536 -18.07247 -17.29676 -17.15349 -16.82905 -16.63199 -16.25367 -16.14337 -15.58409 -15.08769 -14.74998 -14.57302 -14.28513 -13.94316 -13.84549 -13.73120 -13.50098 -13.38504 -13.22990 -13.07223 -13.03969 -12.91701 -12.83744 -12.50570 -12.21825 -12.19371 -11.85737 -11.82922 -11.73810 -11.30701 -10.98176 -10.80506 -10.49689 -9.67951 -9.46205 -9.08314 -8.23593 -6.54338 0.43911 0.51045 1.18229 1.35149 1.37095 1.48047 1.52763 1.91135 2.23759 2.32333 2.59219 2.87017 3.07500 3.73886 3.87273 4.00614 4.07180 4.17778 4.19017 4.30656 4.36065 4.40283 4.48237 4.50966 4.57166 4.60693 4.72052 4.76814 4.84693 4.91578 5.02908 5.08851 5.13294 5.23270 5.23869 5.34284 5.43361 5.56284 5.60269 5.71391 5.76039 5.78928 5.89440 6.00611 6.16734 6.50550 6.71303 7.12704 7.26046 8.74361 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003338 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.112048 B = 8385.585495 C = 9428.818825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.085 4.085 7 C -0.058 4.058 8 C -0.096 4.096 9 C 0.449 3.551 10 O -0.557 6.557 11 O -0.351 6.351 12 C 0.277 3.723 13 H 0.058 0.942 14 C -0.577 4.577 15 H 0.060 0.940 16 C 0.043 3.957 17 N -0.846 5.846 18 Si 0.956 3.044 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.272 1.272 22 C 0.041 3.959 23 C -0.265 4.265 24 C -0.219 4.219 25 C -0.082 4.082 26 O -0.146 6.146 27 C -0.134 4.134 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.171 0.829 41 H 0.225 0.775 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 14.105 3.391 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.150 4.150 6 C -0.085 4.085 7 C -0.095 4.095 8 C -0.133 4.133 9 C 0.295 3.705 10 O -0.450 6.450 11 O -0.267 6.267 12 C 0.225 3.775 13 H 0.075 0.925 14 C -0.613 4.613 15 H 0.078 0.922 16 C -0.166 4.166 17 N -0.479 5.479 18 Si 0.780 3.220 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.198 1.198 22 C -0.012 4.012 23 C -0.285 4.285 24 C -0.238 4.238 25 C -0.150 4.150 26 O -0.039 6.039 27 C -0.152 4.152 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.188 0.812 41 H 0.242 0.758 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.385 14.124 3.380 14.912 hybrid contribution -0.203 -1.418 0.041 1.433 sum -3.588 12.706 3.421 13.639 Atomic orbital electron populations 1.20834 0.89699 1.03459 1.03019 1.20230 0.97366 0.92938 0.98976 1.21351 0.94520 0.98084 1.00876 1.21433 0.94636 0.98398 0.99079 1.21279 1.00659 0.92020 1.01073 1.19802 0.93927 0.94502 1.00281 1.20269 1.00824 0.94248 0.94192 1.21346 1.01147 0.90943 0.99875 1.24240 0.77102 0.87240 0.81957 1.90515 1.54248 1.66065 1.34139 1.86702 1.67273 1.38731 1.33954 1.18621 0.89142 0.81152 0.88599 0.92457 1.21427 1.20727 1.12813 1.06358 0.92219 1.25795 0.98189 0.98333 0.94262 1.70171 1.35042 1.35649 1.07054 0.85553 0.78807 0.79249 0.78438 1.19448 1.19656 1.19760 1.22748 0.93958 0.99521 0.84960 1.21554 0.96254 1.10729 0.99928 1.21911 1.02434 1.06573 0.92892 1.24731 0.87109 1.05033 0.98165 1.84351 1.39297 1.62339 1.17878 1.21146 0.93686 0.98484 1.01849 0.90332 0.90163 0.91625 0.83902 0.83708 0.85068 0.91325 0.90313 0.86607 0.87885 0.92203 0.83728 0.81201 0.75849 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.23 0.71 -1.02 16 2 C -0.10 -1.96 5.88 -19.87 -0.12 -2.08 16 3 C -0.13 -2.38 9.70 22.27 0.22 -2.17 16 4 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 5 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 6 C -0.09 -2.17 5.13 -19.86 -0.10 -2.27 16 7 C -0.06 -1.70 4.64 29.85 0.14 -1.57 16 8 C -0.10 -3.20 5.79 29.85 0.17 -3.03 16 9 C 0.45 20.43 7.92 71.23 0.56 20.99 16 10 O -0.56 -27.58 15.20 21.94 0.33 -27.24 16 11 O -0.35 -18.37 9.25 -48.71 -0.45 -18.82 16 12 C 0.28 15.04 2.58 29.10 0.07 15.11 16 13 H 0.06 3.11 7.15 -2.39 -0.02 3.10 16 14 C -0.58 -33.01 8.91 25.60 0.23 -32.78 16 15 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 16 C 0.04 2.34 5.24 84.65 0.44 2.78 16 17 N -0.85 -47.24 10.62 21.45 0.23 -47.01 16 18 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.04 2.09 5.59 24.83 0.14 2.22 16 23 C -0.27 -11.77 10.81 22.19 0.24 -11.53 16 24 C -0.22 -8.23 10.91 22.19 0.24 -7.99 16 25 C -0.08 -3.21 12.09 66.97 0.81 -2.40 16 26 O -0.15 -7.28 8.87 0.89 0.01 -7.27 16 27 C -0.13 -3.26 9.36 22.27 0.21 -3.06 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 35 H 0.08 2.30 8.04 -2.38 -0.02 2.28 16 36 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 38 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.14 5.85 8.06 -2.91 -0.02 5.82 16 40 H 0.17 4.90 8.06 -2.91 -0.02 4.88 16 41 H 0.23 6.42 8.06 -2.91 -0.02 6.40 16 42 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -69.70 365.47 7.57 -62.13 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 1.01 Total: 26.48 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.41 Total: -33.47 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.23 Total: -47.01 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.11 Total: -53.34 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.70 7.57 -62.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.256 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds