Wall clock time and date at job start Tue Mar 31 2020 10:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 F 1.39900 * 109.46813 * 2 1 4 4 F 1.39901 * 109.47052 * 240.00243 * 2 1 3 5 5 C 1.50702 * 109.47351 * 120.00050 * 2 1 3 6 6 O 1.21282 * 119.99806 * 25.00138 * 5 2 1 7 7 N 1.34778 * 119.99888 * 205.00125 * 5 2 1 8 8 C 1.46504 * 119.99681 * 180.02562 * 7 5 2 9 9 C 1.50699 * 109.46853 * 179.97438 * 8 7 5 10 10 C 1.40073 * 126.12443 * 259.87822 * 9 8 7 11 11 N 1.31016 * 108.25278 * 179.83938 * 10 9 8 12 12 N 1.39746 * 108.17893 * 0.35712 * 11 10 9 13 13 C 1.34642 * 126.12213 * 80.00621 * 9 8 7 14 14 C 1.51042 * 127.91181 * 359.67789 * 13 9 8 15 15 N 1.47502 * 106.99911 * 169.72456 * 14 13 9 16 16 C 1.36935 * 121.00921 * 222.89840 * 15 14 13 17 17 H 1.08006 * 119.99822 * 155.91133 * 16 15 14 18 18 C 1.38810 * 120.00372 * 335.91985 * 16 15 14 19 19 N 1.31616 * 119.99791 * 344.46029 * 18 16 15 20 20 Si 1.86801 * 120.00237 * 164.46376 * 18 16 15 21 21 H 1.48504 * 109.47067 * 59.99674 * 20 18 16 22 22 H 1.48499 * 109.47175 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46938 * 299.99878 * 20 18 16 24 24 C 1.47087 * 117.97661 * 42.92530 * 15 14 13 25 25 C 1.46547 * 127.32582 * 179.45335 * 12 11 10 26 26 H 1.08999 * 109.47452 * 299.99600 * 1 2 3 27 27 H 1.08994 * 109.47266 * 59.99964 * 1 2 3 28 28 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 29 29 H 0.96992 * 120.00124 * 359.97438 * 7 5 2 30 30 H 1.08997 * 109.47040 * 60.00068 * 8 7 5 31 31 H 1.08995 * 109.46963 * 299.99998 * 8 7 5 32 32 H 1.07995 * 125.87459 * 0.03643 * 10 9 8 33 33 H 1.08997 * 109.94720 * 289.10011 * 14 13 9 34 34 H 1.08994 * 109.94586 * 50.35420 * 14 13 9 35 35 H 0.97001 * 120.00162 * 180.02562 * 19 18 16 36 36 H 1.08996 * 109.51638 * 56.33228 * 24 15 14 37 37 H 1.08993 * 109.51397 * 176.49306 * 24 15 14 38 38 H 1.09003 * 109.50738 * 41.61264 * 25 12 11 39 39 H 1.09005 * 109.50863 * 281.47866 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2305 6 8 1.3370 -1.5394 1.7784 7 7 3.2543 -0.4245 1.7219 8 6 3.7429 -1.1156 2.9178 9 6 5.1246 -0.6181 3.2561 10 6 6.3311 -1.2638 2.9569 11 7 7.3148 -0.5241 3.4060 12 7 6.7664 0.6098 4.0114 13 6 5.4203 0.5256 3.9022 14 6 4.4628 1.5687 4.4279 15 7 5.2496 2.4929 5.2662 16 6 4.7700 2.9351 6.4702 17 1 5.4558 3.2703 7.2343 18 6 3.4027 2.9523 6.7087 19 7 2.5582 2.8430 5.7051 20 14 2.7611 3.1307 8.4540 21 1 3.2419 4.4124 9.0295 22 1 1.2763 3.1214 8.4389 23 1 3.2553 2.0005 9.2809 24 6 6.5646 2.9254 4.7691 25 6 7.4884 1.7073 4.6607 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8105 0.2381 1.2835 30 1 3.7798 -2.1883 2.7279 31 1 3.0704 -0.9172 3.7522 32 1 6.4330 -2.2074 2.4415 33 1 4.0122 2.1121 3.5974 34 1 3.6866 1.0927 5.0270 35 1 1.6027 2.8554 5.8717 36 1 6.4499 3.3838 3.7869 37 1 6.9956 3.6487 5.4613 38 1 8.3654 1.9672 4.0679 39 1 7.8011 1.3977 5.6580 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128164451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:16 Heat of formation + Delta-G solvation = -30.245811 kcal Electronic energy + Delta-G solvation = -26880.760721 eV Core-core repulsion = 22689.789711 eV Total energy + Delta-G solvation = -4190.971010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.22940 -47.22514 -41.06106 -39.47192 -36.36345 -35.10810 -33.06290 -31.69891 -31.29977 -30.27202 -29.01548 -26.40071 -25.47131 -23.96064 -23.37643 -21.81235 -20.67866 -20.23622 -18.81224 -18.20982 -17.81478 -16.78634 -16.74679 -16.14063 -15.72428 -15.26162 -14.98280 -14.81109 -14.50756 -14.06900 -13.90465 -13.67120 -13.53909 -13.42834 -13.37480 -13.24900 -12.77996 -12.62387 -12.56051 -12.46609 -12.01707 -11.75434 -11.68103 -11.36134 -11.02976 -10.90616 -10.77510 -10.27910 -10.24957 -10.12432 -9.99519 -9.05386 -8.93875 -8.60431 -8.01703 -7.12084 -6.04538 -3.47416 2.22575 2.32239 2.60940 2.95134 3.22496 3.27409 3.34676 3.34967 3.73983 3.99649 4.28716 4.48696 4.52396 4.89025 5.02422 5.16390 5.29373 5.31470 5.39221 5.47272 5.50119 5.56233 5.66265 5.75860 5.78487 5.96994 6.17897 6.29064 6.37084 6.39267 6.45819 6.85864 7.01040 7.09188 7.36672 7.52074 7.56066 7.93590 8.05610 8.17468 8.88539 9.50993 10.03548 11.06397 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.004936 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.316966 B = 5670.835859 C = 7176.971529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.279 3.721 3 F -0.186 7.186 4 F -0.186 7.186 5 C 0.485 3.515 6 O -0.511 6.511 7 N -0.697 5.697 8 C 0.207 3.793 9 C -0.294 4.294 10 C 0.058 3.942 11 N -0.316 5.316 12 N -0.357 5.357 13 C 0.123 3.877 14 C 0.229 3.771 15 N -0.596 5.596 16 C -0.265 4.265 17 H 0.074 0.926 18 C 0.009 3.991 19 N -0.903 5.903 20 Si 0.910 3.090 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.282 1.282 24 C 0.128 3.872 25 C 0.113 3.887 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.407 0.593 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.177 0.823 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.260 0.740 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -4.607 -9.799 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.240 3.760 3 F -0.168 7.168 4 F -0.168 7.168 5 C 0.265 3.735 6 O -0.386 6.386 7 N -0.347 5.347 8 C 0.085 3.915 9 C -0.306 4.306 10 C -0.129 4.129 11 N -0.136 5.136 12 N -0.138 5.138 13 C -0.009 4.009 14 C 0.102 3.898 15 N -0.318 5.318 16 C -0.394 4.394 17 H 0.091 0.909 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.739 3.261 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.208 1.208 24 C 0.000 4.000 25 C -0.010 4.010 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.242 0.758 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.194 0.806 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.527 -4.931 -9.175 10.527 hybrid contribution -0.671 0.395 0.422 0.886 sum 0.856 -4.536 -8.753 9.896 Atomic orbital electron populations 1.22621 0.89004 1.06560 1.05754 1.21415 0.95866 0.75807 0.82934 1.93088 1.90422 1.36601 1.96643 1.93066 1.90592 1.80877 1.52224 1.20636 0.82932 0.84171 0.85772 1.90764 1.55878 1.32882 1.59093 1.46285 1.16220 1.42408 1.29783 1.19457 0.90548 0.95383 0.86136 1.19358 0.95085 0.99589 1.16584 1.23685 0.89934 0.99485 0.99749 1.77185 1.22928 0.96482 1.17015 1.48518 1.04530 1.17135 1.43568 1.22621 0.86329 0.97337 0.94616 1.19952 0.89737 0.85836 0.94233 1.44189 1.15838 1.50964 1.20844 1.19122 0.90442 1.40247 0.89556 0.90874 1.25040 0.96228 0.99955 0.97853 1.69931 1.02192 1.53249 1.29291 0.86261 0.77802 0.78260 0.83810 1.20683 1.21340 1.20824 1.21282 0.87380 0.92340 0.98986 1.22572 0.95869 0.85880 0.96722 0.88521 0.89396 0.88218 0.75782 0.90664 0.90154 0.80641 0.92440 0.87242 0.92980 0.94542 0.89655 0.90108 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.92 37.16 0.33 -1.55 16 2 C 0.28 3.58 2.47 -27.88 -0.07 3.51 16 3 F -0.19 -2.55 16.51 2.25 0.04 -2.52 16 4 F -0.19 -2.40 17.05 2.25 0.04 -2.36 16 5 C 0.48 7.23 7.23 -10.98 -0.08 7.16 16 6 O -0.51 -8.74 16.10 5.56 0.09 -8.65 16 7 N -0.70 -10.21 5.48 -61.47 -0.34 -10.55 16 8 C 0.21 3.20 5.95 -5.19 -0.03 3.17 16 9 C -0.29 -4.96 5.46 -105.21 -0.57 -5.54 16 10 C 0.06 0.93 11.97 -17.21 -0.21 0.73 16 11 N -0.32 -5.75 12.61 30.70 0.39 -5.36 16 12 N -0.36 -6.73 4.03 -56.93 -0.23 -6.96 16 13 C 0.12 2.39 6.71 -82.16 -0.55 1.84 16 14 C 0.23 5.06 5.11 -4.48 -0.02 5.04 16 15 N -0.60 -13.64 3.01 -172.97 -0.52 -14.16 16 16 C -0.27 -6.67 9.67 -15.06 -0.15 -6.82 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 18 C 0.01 0.22 5.00 -17.43 -0.09 0.14 16 19 N -0.90 -24.14 11.07 55.49 0.61 -23.53 16 20 Si 0.91 20.51 29.58 -169.99 -5.03 15.49 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 C 0.13 2.36 6.49 -3.59 -0.02 2.34 16 25 C 0.11 1.89 7.44 -3.88 -0.03 1.86 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 29 H 0.41 5.69 8.02 -40.82 -0.33 5.37 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.18 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.11 2.71 6.46 -51.93 -0.34 2.37 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.44 7.94 -51.93 -0.41 1.03 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -29.32 338.86 -6.17 -35.48 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.84 Total: 6.13 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -1.49 Total: 11.88 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.09 Total: -60.55 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.32 -6.17 -35.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128164451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.237 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds