Wall clock time and date at job start Tue Mar 31 2020 10:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46909 * 240.00046 * 2 1 3 5 5 C 1.53002 * 109.47017 * 62.88027 * 4 2 1 6 6 H 1.08997 * 109.46946 * 301.82901 * 5 4 2 7 7 C 1.52993 * 109.46813 * 181.83000 * 5 4 2 8 8 N 1.46497 * 109.46881 * 61.82873 * 5 4 2 9 9 C 1.36936 * 119.99792 * 208.71979 * 8 5 4 10 10 H 1.07994 * 120.00355 * 4.99456 * 9 8 5 11 11 C 1.38813 * 119.99790 * 184.99137 * 9 8 5 12 12 N 1.31622 * 119.99831 * 184.75764 * 11 9 8 13 13 Si 1.86799 * 120.00311 * 4.76000 * 11 9 8 14 14 H 1.48490 * 109.47174 * 94.39663 * 13 11 9 15 15 H 1.48506 * 109.47235 * 214.39817 * 13 11 9 16 16 H 1.48504 * 109.46860 * 334.39676 * 13 11 9 17 17 N 1.46497 * 109.46471 * 120.00259 * 2 1 3 18 18 C 1.34780 * 120.00350 * 271.26422 * 17 2 1 19 19 O 1.21648 * 119.99544 * 5.05537 * 18 17 2 20 20 C 1.47023 * 120.00349 * 185.05564 * 18 17 2 21 21 C 1.38546 * 126.90431 * 173.38299 * 20 18 17 22 22 Cl 1.73600 * 127.33746 * 359.97438 * 21 20 18 23 23 C 1.39806 * 105.32410 * 179.97438 * 21 20 18 24 24 N 1.30837 * 107.88082 * 0.02562 * 23 21 20 25 25 N 1.28438 * 110.97779 * 359.72774 * 24 23 21 26 26 C 1.46501 * 125.18788 * 180.25585 * 25 24 23 27 27 H 1.08999 * 109.46919 * 59.99436 * 1 2 3 28 28 H 1.09001 * 109.47004 * 300.00131 * 1 2 3 29 29 H 1.09001 * 109.47527 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46343 * 182.87975 * 4 2 1 31 31 H 1.09001 * 109.47021 * 302.87766 * 4 2 1 32 32 H 1.09000 * 109.47635 * 59.99974 * 7 5 4 33 33 H 1.08996 * 109.47058 * 179.97438 * 7 5 4 34 34 H 1.09003 * 109.47665 * 299.99931 * 7 5 4 35 35 H 0.96998 * 119.99977 * 28.73059 * 8 5 4 36 36 H 0.97002 * 119.99799 * 179.97438 * 12 11 9 37 37 H 0.97003 * 119.99918 * 91.27253 * 17 2 1 38 38 H 1.08007 * 126.06260 * 179.97438 * 23 21 20 39 39 H 1.09001 * 109.47349 * 262.39661 * 26 25 24 40 40 H 1.09001 * 109.47002 * 22.40209 * 26 25 24 41 41 H 1.09003 * 109.46776 * 142.39504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5900 0.0407 -2.4974 6 1 0.5025 0.1138 -2.5061 7 6 2.0610 -0.7051 -3.7475 8 7 2.1698 1.3859 -2.4838 9 6 1.5153 2.4199 -3.0984 10 1 0.5348 2.2621 -3.5228 11 6 2.1120 3.6708 -3.1758 12 7 1.4464 4.6872 -3.6821 13 14 3.8595 3.9118 -2.5615 14 1 4.8072 3.7673 -3.6955 15 1 3.9947 5.2686 -1.9730 16 1 4.1658 2.8909 -1.5273 17 7 2.0182 -0.6907 1.1962 18 6 2.2185 -0.0022 2.3374 19 8 1.9076 1.1721 2.4017 20 6 2.8127 -0.6703 3.5045 21 6 3.1975 -0.0774 4.6961 22 17 3.0807 1.6013 5.1227 23 6 3.6998 -1.1190 5.4817 24 7 3.6087 -2.2250 4.7886 25 7 3.0918 -2.0028 3.6340 26 6 2.8426 -3.0209 2.6105 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1288 -0.7661 -1.2237 31 1 1.6351 -1.7329 -1.2754 32 1 1.6296 -1.7061 -3.7577 33 1 1.7400 -0.1626 -4.6367 34 1 3.1485 -0.7783 -3.7389 35 1 3.0175 1.5442 -2.0396 36 1 1.8632 5.5614 -3.7359 37 1 2.1974 -1.6436 1.1668 38 1 4.0941 -1.0270 6.4830 39 1 3.6594 -3.0181 1.8888 40 1 2.7775 -4.0016 3.0818 41 1 1.9054 -2.8005 2.0995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134385321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:55 Heat of formation + Delta-G solvation = 59.269521 kcal Electronic energy + Delta-G solvation = -24400.331243 eV Core-core repulsion = 20765.038590 eV Total energy + Delta-G solvation = -3635.292653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.97935 -39.67055 -37.21029 -36.65522 -35.06263 -33.79358 -32.31096 -31.41129 -30.14834 -29.13128 -27.75862 -26.45086 -24.13033 -23.23474 -22.02436 -21.26723 -20.78952 -19.68849 -18.36821 -17.52208 -16.83749 -16.26125 -16.12035 -15.19337 -15.03297 -14.79274 -14.57138 -14.05480 -13.93335 -13.78689 -13.64118 -13.14777 -12.97358 -12.63804 -12.41982 -12.25345 -12.03899 -11.94650 -11.83281 -11.52673 -11.16391 -10.94932 -10.70090 -10.67784 -10.53831 -10.42001 -10.09897 -9.84615 -9.66287 -9.57261 -9.21403 -8.96930 -8.92252 -7.26004 -5.75408 -3.10890 0.82587 1.58553 2.10124 2.39197 2.88119 3.03253 3.40639 3.43083 3.49736 3.93121 4.21238 4.48577 4.58587 4.61675 4.72037 4.86961 4.95664 5.08943 5.14141 5.38170 5.47788 5.55501 5.68828 5.78976 5.84497 5.90625 6.01589 6.12793 6.14181 6.26331 6.27772 6.39049 6.49770 6.60182 6.78508 6.93026 7.28575 7.49396 8.00892 8.02935 8.43645 9.22404 9.95062 10.14132 11.42835 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004038 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.147277 B = 6933.233595 C = 8101.596070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.141 3.859 3 H 0.107 0.893 4 C -0.134 4.134 5 C 0.178 3.822 6 H 0.064 0.936 7 C -0.166 4.166 8 N -0.748 5.748 9 C -0.243 4.243 10 H 0.090 0.910 11 C 0.008 3.992 12 N -0.932 5.932 13 Si 0.884 3.116 14 H -0.287 1.287 15 H -0.291 1.291 16 H -0.279 1.279 17 N -0.728 5.728 18 C 0.581 3.419 19 O -0.493 6.493 20 C -0.022 4.022 21 C -0.089 4.089 22 Cl -0.002 7.002 23 C 0.016 3.984 24 N -0.264 5.264 25 N -0.274 5.274 26 C 0.073 3.927 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.389 0.611 38 H 0.197 0.803 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -19.226 15.538 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.125 0.875 4 C -0.173 4.173 5 C 0.068 3.932 6 H 0.082 0.918 7 C -0.226 4.226 8 N -0.392 5.392 9 C -0.373 4.373 10 H 0.108 0.892 11 C -0.188 4.188 12 N -0.580 5.580 13 Si 0.715 3.285 14 H -0.213 1.213 15 H -0.218 1.218 16 H -0.205 1.205 17 N -0.385 5.385 18 C 0.364 3.636 19 O -0.364 6.364 20 C -0.150 4.150 21 C -0.127 4.127 22 Cl 0.026 6.974 23 C -0.162 4.162 24 N -0.096 5.096 25 N -0.064 5.064 26 C -0.067 4.067 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.196 0.804 36 H 0.069 0.931 37 H 0.228 0.772 38 H 0.214 0.786 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.815 -19.284 15.373 24.822 hybrid contribution 1.289 0.742 0.389 1.537 sum 4.104 -18.542 15.762 24.680 Atomic orbital electron populations 1.22160 0.94840 1.01132 1.03556 1.21169 0.94629 0.98698 0.81714 0.87486 1.22211 1.01041 0.98982 0.95028 1.20211 0.97591 0.84999 0.90376 0.91818 1.22426 1.00565 0.98649 1.00942 1.42914 1.25264 1.04359 1.66664 1.19030 1.00711 0.88009 1.29533 0.89238 1.24662 0.97742 0.95788 1.00614 1.69704 1.36765 1.00467 1.51021 0.86552 0.86556 0.77069 0.78313 1.21342 1.21757 1.20510 1.46640 1.68101 1.12200 1.11522 1.16841 0.78937 0.86470 0.81342 1.90951 1.48948 1.14524 1.82006 1.21602 1.10159 0.84894 0.98365 1.21372 1.07875 0.89164 0.94297 1.98388 1.96707 1.10077 1.92180 1.23578 1.04692 0.86596 1.01322 1.73219 1.15768 1.26837 0.93805 1.45497 1.43114 1.05770 1.11998 1.22495 1.03516 0.91323 0.89408 0.89939 0.92515 0.93375 0.91849 0.91662 0.94266 0.92186 0.93748 0.80439 0.93089 0.77220 0.78638 0.88531 0.86937 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.23 37.16 0.34 -1.91 16 2 C 0.14 2.07 2.59 -67.93 -0.18 1.90 16 3 H 0.11 2.07 6.96 -51.93 -0.36 1.71 16 4 C -0.13 -1.78 4.50 -26.73 -0.12 -1.90 16 5 C 0.18 3.07 2.70 -67.93 -0.18 2.89 16 6 H 0.06 1.13 6.32 -51.93 -0.33 0.80 16 7 C -0.17 -2.62 9.52 37.15 0.35 -2.27 16 8 N -0.75 -16.76 4.13 -53.43 -0.22 -16.98 16 9 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 10 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 11 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 12 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 13 Si 0.88 22.57 28.01 -169.99 -4.76 17.81 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 16 H -0.28 -6.73 6.15 56.52 0.35 -6.38 16 17 N -0.73 -8.81 4.90 -55.01 -0.27 -9.08 16 18 C 0.58 8.61 7.77 -12.70 -0.10 8.51 16 19 O -0.49 -9.36 15.51 5.23 0.08 -9.27 16 20 C -0.02 -0.28 6.96 -82.00 -0.57 -0.85 16 21 C -0.09 -1.13 6.87 -38.88 -0.27 -1.40 16 22 Cl 0.00 -0.03 28.15 -51.86 -1.46 -1.49 16 23 C 0.02 0.16 12.04 -17.39 -0.21 -0.05 16 24 N -0.26 -2.78 11.89 30.61 0.36 -2.42 16 25 N -0.27 -2.70 3.75 -63.85 -0.24 -2.94 16 26 C 0.07 0.37 9.76 59.85 0.58 0.95 16 27 H 0.08 1.31 6.46 -51.93 -0.34 0.98 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.36 8.25 5.56 -40.82 -0.23 8.02 16 36 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 37 H 0.39 3.22 4.36 -40.82 -0.18 3.05 16 38 H 0.20 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.10 0.35 8.10 -51.93 -0.42 -0.07 16 40 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.40 6.02 -51.93 -0.31 0.09 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -34.94 351.88 -6.61 -41.54 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.58 Total: 6.79 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.60 Total: -0.78 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.41 Total: -59.90 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.76 Total: 17.81 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.46 Total: -1.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.94 -6.61 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134385321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.812 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds