Wall clock time and date at job start Tue Mar 31 2020 10:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46909 * 240.00046 * 2 1 3 5 5 C 1.53002 * 109.47017 * 62.88027 * 4 2 1 6 6 H 1.08997 * 109.46946 * 301.82901 * 5 4 2 7 7 C 1.52993 * 109.46813 * 181.83000 * 5 4 2 8 8 N 1.46497 * 109.46881 * 61.82873 * 5 4 2 9 9 C 1.36936 * 119.99792 * 208.71979 * 8 5 4 10 10 H 1.07994 * 120.00355 * 4.99456 * 9 8 5 11 11 C 1.38813 * 119.99790 * 184.99137 * 9 8 5 12 12 N 1.31622 * 119.99831 * 184.75764 * 11 9 8 13 13 Si 1.86799 * 120.00311 * 4.76000 * 11 9 8 14 14 H 1.48490 * 109.47174 * 94.39663 * 13 11 9 15 15 H 1.48506 * 109.47235 * 214.39817 * 13 11 9 16 16 H 1.48504 * 109.46860 * 334.39676 * 13 11 9 17 17 N 1.46497 * 109.46471 * 120.00259 * 2 1 3 18 18 C 1.34780 * 120.00350 * 271.26422 * 17 2 1 19 19 O 1.21648 * 119.99544 * 5.05537 * 18 17 2 20 20 C 1.47023 * 120.00349 * 185.05564 * 18 17 2 21 21 C 1.38546 * 126.90431 * 173.38299 * 20 18 17 22 22 Cl 1.73600 * 127.33746 * 359.97438 * 21 20 18 23 23 C 1.39806 * 105.32410 * 179.97438 * 21 20 18 24 24 N 1.30837 * 107.88082 * 0.02562 * 23 21 20 25 25 N 1.28438 * 110.97779 * 359.72774 * 24 23 21 26 26 C 1.46501 * 125.18788 * 180.25585 * 25 24 23 27 27 H 1.08999 * 109.46919 * 59.99436 * 1 2 3 28 28 H 1.09001 * 109.47004 * 300.00131 * 1 2 3 29 29 H 1.09001 * 109.47527 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46343 * 182.87975 * 4 2 1 31 31 H 1.09001 * 109.47021 * 302.87766 * 4 2 1 32 32 H 1.09000 * 109.47635 * 59.99974 * 7 5 4 33 33 H 1.08996 * 109.47058 * 179.97438 * 7 5 4 34 34 H 1.09003 * 109.47665 * 299.99931 * 7 5 4 35 35 H 0.96998 * 119.99977 * 28.73059 * 8 5 4 36 36 H 0.97002 * 119.99799 * 179.97438 * 12 11 9 37 37 H 0.97003 * 119.99918 * 91.27253 * 17 2 1 38 38 H 1.08007 * 126.06260 * 179.97438 * 23 21 20 39 39 H 1.09001 * 109.47349 * 262.39661 * 26 25 24 40 40 H 1.09001 * 109.47002 * 22.40209 * 26 25 24 41 41 H 1.09003 * 109.46776 * 142.39504 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5900 0.0407 -2.4974 6 1 0.5025 0.1138 -2.5061 7 6 2.0610 -0.7051 -3.7475 8 7 2.1698 1.3859 -2.4838 9 6 1.5153 2.4199 -3.0984 10 1 0.5348 2.2621 -3.5228 11 6 2.1120 3.6708 -3.1758 12 7 1.4464 4.6872 -3.6821 13 14 3.8595 3.9118 -2.5615 14 1 4.8072 3.7673 -3.6955 15 1 3.9947 5.2686 -1.9730 16 1 4.1658 2.8909 -1.5273 17 7 2.0182 -0.6907 1.1962 18 6 2.2185 -0.0022 2.3374 19 8 1.9076 1.1721 2.4017 20 6 2.8127 -0.6703 3.5045 21 6 3.1975 -0.0774 4.6961 22 17 3.0807 1.6013 5.1227 23 6 3.6998 -1.1190 5.4817 24 7 3.6087 -2.2250 4.7886 25 7 3.0918 -2.0028 3.6340 26 6 2.8426 -3.0209 2.6105 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1288 -0.7661 -1.2237 31 1 1.6351 -1.7329 -1.2754 32 1 1.6296 -1.7061 -3.7577 33 1 1.7400 -0.1626 -4.6367 34 1 3.1485 -0.7783 -3.7389 35 1 3.0175 1.5442 -2.0396 36 1 1.8632 5.5614 -3.7359 37 1 2.1974 -1.6436 1.1668 38 1 4.0941 -1.0270 6.4830 39 1 3.6594 -3.0181 1.8888 40 1 2.7775 -4.0016 3.0818 41 1 1.9054 -2.8005 2.0995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134385321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:54 Heat of formation + Delta-G solvation = 33.778931 kcal Electronic energy + Delta-G solvation = -24401.436598 eV Core-core repulsion = 20765.038590 eV Total energy + Delta-G solvation = -3636.398008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.79277 -40.81681 -38.57358 -37.63597 -36.39643 -34.77457 -33.99792 -32.59616 -31.48777 -30.60406 -28.34777 -27.62356 -25.55187 -24.83674 -22.82355 -22.49376 -21.81290 -21.05841 -19.74068 -19.06606 -17.62234 -17.26354 -17.15928 -16.83474 -16.01287 -15.93481 -15.78428 -15.44653 -15.39487 -14.74558 -14.67680 -14.34928 -14.14306 -13.99558 -13.74880 -13.41890 -13.13574 -12.92573 -12.90177 -12.88525 -12.84781 -12.48385 -12.21219 -12.06409 -11.88284 -11.68453 -11.61092 -11.53802 -11.16056 -10.97925 -10.51445 -10.26160 -9.87617 -9.25790 -8.00236 -5.30080 -0.11818 0.78453 1.29112 1.34497 1.37562 1.43812 1.57553 1.84594 1.97872 2.48426 3.23694 3.32783 3.42785 3.64365 3.81082 3.90738 4.07954 4.12495 4.21999 4.24433 4.27774 4.50274 4.52551 4.59682 4.72048 4.84421 4.95511 4.99613 5.02573 5.08320 5.14786 5.25373 5.39403 5.46072 5.49460 5.62626 5.84152 6.25235 6.30043 6.68207 6.98983 7.13127 7.91938 8.07070 9.21833 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004038 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.147277 B = 6933.233595 C = 8101.596070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.056 0.944 4 C -0.120 4.120 5 C 0.166 3.834 6 H 0.056 0.944 7 C -0.158 4.158 8 N -0.752 5.752 9 C -0.214 4.214 10 H 0.061 0.939 11 C -0.064 4.064 12 N -0.985 5.985 13 Si 0.946 3.054 14 H -0.280 1.280 15 H -0.304 1.304 16 H -0.258 1.258 17 N -0.706 5.706 18 C 0.580 3.420 19 O -0.545 6.545 20 C -0.041 4.041 21 C -0.108 4.108 22 Cl -0.020 7.020 23 C 0.018 3.982 24 N -0.262 5.262 25 N -0.259 5.259 26 C 0.054 3.946 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.362 0.638 36 H 0.254 0.746 37 H 0.411 0.589 38 H 0.225 0.775 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -23.645 16.424 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.074 0.926 4 C -0.158 4.158 5 C 0.058 3.942 6 H 0.074 0.926 7 C -0.217 4.217 8 N -0.396 5.396 9 C -0.345 4.345 10 H 0.079 0.921 11 C -0.255 4.255 12 N -0.636 5.636 13 Si 0.776 3.224 14 H -0.206 1.206 15 H -0.232 1.232 16 H -0.184 1.184 17 N -0.364 5.364 18 C 0.364 3.636 19 O -0.421 6.421 20 C -0.170 4.170 21 C -0.147 4.147 22 Cl 0.008 6.992 23 C -0.158 4.158 24 N -0.095 5.095 25 N -0.050 5.050 26 C -0.084 4.084 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.195 0.805 36 H 0.063 0.937 37 H 0.254 0.746 38 H 0.241 0.759 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.207 -23.847 16.259 29.167 hybrid contribution 0.751 1.938 0.116 2.081 sum 4.958 -21.909 16.376 27.799 Atomic orbital electron populations 1.22085 0.94620 1.02972 1.01417 1.20908 0.94770 0.96824 0.83467 0.92565 1.22102 1.01820 1.00381 0.91519 1.20547 0.97139 0.83089 0.93379 0.92633 1.22284 1.01113 1.00106 0.98216 1.42973 1.25052 1.05572 1.65992 1.19032 0.99388 0.89112 1.26981 0.92137 1.25376 1.01789 0.95855 1.02472 1.69871 1.38676 1.00918 1.54182 0.85524 0.82015 0.76603 0.78288 1.20614 1.23174 1.18359 1.46359 1.66999 1.13071 1.09947 1.17124 0.78274 0.85963 0.82215 1.90928 1.51261 1.16891 1.82988 1.21330 1.11449 0.86459 0.97774 1.21651 1.08998 0.88850 0.95193 1.98376 1.96841 1.11652 1.92295 1.24014 1.03995 0.85556 1.02243 1.73253 1.15616 1.26597 0.94014 1.45922 1.41446 1.05275 1.12361 1.23018 1.04942 0.91240 0.89205 0.92241 0.94553 0.89435 0.90817 0.86563 0.90075 0.95206 0.93134 0.80481 0.93689 0.74577 0.75888 0.86314 0.84440 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.23 71.98 0.66 -3.49 16 2 C 0.14 3.99 2.59 44.99 0.12 4.11 16 3 H 0.06 2.19 6.96 -2.39 -0.02 2.17 16 4 C -0.12 -2.69 4.50 30.60 0.14 -2.56 16 5 C 0.17 5.37 2.70 44.99 0.12 5.49 16 6 H 0.06 1.90 6.32 -2.39 -0.02 1.89 16 7 C -0.16 -4.48 9.52 71.98 0.68 -3.79 16 8 N -0.75 -33.31 4.13 -322.96 -1.33 -34.65 16 9 C -0.21 -11.96 10.41 84.03 0.87 -11.09 16 10 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 11 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 12 N -0.98 -64.40 13.97 21.65 0.30 -64.10 16 13 Si 0.95 47.61 28.01 68.60 1.92 49.54 16 14 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 16 H -0.26 -11.93 6.15 99.48 0.61 -11.32 16 17 N -0.71 -15.23 4.90 -446.18 -2.19 -17.41 16 18 C 0.58 16.66 7.77 86.55 0.67 17.33 16 19 O -0.55 -21.24 15.51 -4.18 -0.06 -21.31 16 20 C -0.04 -0.98 6.96 40.76 0.28 -0.69 16 21 C -0.11 -2.65 6.87 22.72 0.16 -2.49 16 22 Cl -0.02 -0.55 28.15 -2.72 -0.08 -0.63 16 23 C 0.02 0.33 12.04 85.22 1.03 1.35 16 24 N -0.26 -4.70 11.89 -57.06 -0.68 -5.38 16 25 N -0.26 -4.29 3.75 -355.92 -1.34 -5.63 16 26 C 0.05 0.29 9.76 127.77 1.25 1.54 16 27 H 0.06 1.89 6.46 -2.39 -0.02 1.87 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.36 16.05 5.56 -92.71 -0.52 15.54 16 36 H 0.25 16.01 8.31 -92.71 -0.77 15.23 16 37 H 0.41 4.98 4.36 -92.71 -0.40 4.58 16 38 H 0.22 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.12 0.21 8.10 -2.39 -0.02 0.19 16 40 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.11 0.34 6.02 -2.39 -0.01 0.32 16 Total: -1.00 -81.82 351.88 3.05 -78.77 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.05 Total: 18.43 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.45 Total: 2.37 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -5.23 Total: -127.17 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.92 Total: 49.54 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -81.82 3.05 -78.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134385321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.552 kcal (2) G-P(sol) polarization free energy of solvation -81.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds