Wall clock time and date at job start Tue Mar 31 2020 10:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46722 * 2 1 4 4 C 1.52999 * 109.46978 * 240.00463 * 2 1 3 5 5 C 1.53006 * 109.46626 * 174.99863 * 4 2 1 6 6 H 1.08992 * 109.47046 * 304.99570 * 5 4 2 7 7 C 1.52999 * 109.46811 * 184.99727 * 5 4 2 8 8 N 1.46496 * 109.47070 * 64.99833 * 5 4 2 9 9 C 1.36939 * 119.99932 * 204.99425 * 8 5 4 10 10 H 1.07994 * 119.99963 * 0.02562 * 9 8 5 11 11 C 1.38810 * 120.00325 * 179.97438 * 9 8 5 12 12 N 1.31625 * 119.99682 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00344 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47155 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47071 * 120.00464 * 13 11 9 16 16 H 1.48506 * 109.47282 * 240.00592 * 13 11 9 17 17 N 1.46500 * 109.47080 * 120.00096 * 2 1 3 18 18 C 1.34774 * 119.99721 * 275.00170 * 17 2 1 19 19 O 1.21574 * 120.00668 * 0.02562 * 18 17 2 20 20 C 1.47669 * 119.99881 * 180.02562 * 18 17 2 21 21 N 1.31824 * 126.45849 * 359.68569 * 20 18 17 22 22 N 1.28476 * 110.13789 * 179.87867 * 21 20 18 23 23 C 1.46498 * 124.93889 * 180.12307 * 22 21 20 24 24 C 1.35645 * 110.12623 * 0.39555 * 22 21 20 25 25 C 1.35466 * 107.13475 * 359.76376 * 24 22 21 26 26 Cl 1.73595 * 127.23847 * 179.97438 * 25 24 22 27 27 H 1.09001 * 109.47356 * 299.99537 * 1 2 3 28 28 H 1.09000 * 109.47210 * 60.00163 * 1 2 3 29 29 H 1.09007 * 109.46638 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47839 * 54.99933 * 4 2 1 31 31 H 1.09000 * 109.47160 * 294.99494 * 4 2 1 32 32 H 1.09009 * 109.47170 * 300.00068 * 7 5 4 33 33 H 1.09001 * 109.47273 * 59.99848 * 7 5 4 34 34 H 1.09002 * 109.46911 * 179.97438 * 7 5 4 35 35 H 0.97001 * 120.00360 * 24.99882 * 8 5 4 36 36 H 0.97003 * 120.00026 * 179.97438 * 12 11 9 37 37 H 0.96996 * 119.99912 * 95.00275 * 17 2 1 38 38 H 1.08999 * 109.47107 * 270.31819 * 23 22 21 39 39 H 1.09001 * 109.46712 * 30.31417 * 23 22 21 40 40 H 1.08998 * 109.47311 * 150.31443 * 23 22 21 41 41 H 1.07998 * 126.42967 * 179.75611 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0646 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3944 -0.9854 0.2806 10 1 5.9386 -0.1788 -0.1879 11 6 5.9522 -1.6681 1.3528 12 7 5.2887 -2.6509 1.9242 13 14 7.6443 -1.1921 1.9849 14 1 8.1751 -0.0645 1.1776 15 1 7.5427 -0.7773 3.4072 16 1 8.5600 -2.3558 1.8728 17 7 2.0184 -0.6906 1.1962 18 6 2.1470 -0.0183 2.3571 19 8 1.8574 1.1612 2.4119 20 6 2.6398 -0.7142 3.5627 21 7 2.9831 -1.9841 3.6488 22 7 3.3690 -2.2579 4.8432 23 6 3.8243 -3.5744 5.2968 24 6 3.2880 -1.1523 5.6249 25 6 2.8266 -0.1452 4.8452 26 17 2.5270 1.4977 5.3194 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.6055 -0.2617 -2.1370 31 1 1.7517 -1.7714 -1.2057 32 1 3.7723 -2.2740 -2.6700 33 1 3.6264 -0.6884 -3.4658 34 1 5.1508 -1.1474 -2.6701 35 1 3.6648 -2.0583 0.2386 36 1 5.6786 -3.1282 2.6732 37 1 2.2491 -1.6317 1.1526 38 1 2.9718 -4.1486 5.6594 39 1 4.2917 -4.1032 4.4660 40 1 4.5483 -3.4509 6.1022 41 1 3.5432 -1.0872 6.6723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134434443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:10 Heat of formation + Delta-G solvation = 35.914441 kcal Electronic energy + Delta-G solvation = -25597.342961 eV Core-core repulsion = 21961.037556 eV Total energy + Delta-G solvation = -3636.305405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.40966 -40.45370 -38.19700 -37.38483 -35.68393 -34.24837 -33.86228 -32.06026 -31.28451 -30.15536 -28.15321 -27.54435 -25.48077 -24.34820 -22.35305 -21.99980 -21.60284 -20.76533 -19.01493 -18.72485 -17.49820 -17.15054 -16.97897 -16.57734 -15.67326 -15.53280 -15.47827 -15.32835 -14.98743 -14.45462 -14.27622 -14.12715 -13.71102 -13.53083 -13.39880 -13.28283 -13.13032 -12.89004 -12.77587 -12.66886 -12.57931 -12.32347 -12.24606 -12.10229 -11.68935 -11.53243 -11.42454 -11.35625 -10.83045 -10.78213 -10.10556 -9.77993 -9.56568 -8.69929 -7.71242 -4.93745 0.81957 1.00946 1.14054 1.40241 1.43983 1.49474 1.95620 2.44880 2.62587 2.70150 3.57775 3.63229 3.83644 3.89894 4.05773 4.19728 4.22912 4.42846 4.48291 4.51790 4.59156 4.61268 4.74011 4.80506 4.87354 4.90718 4.95997 5.09684 5.14240 5.18367 5.22521 5.40750 5.46216 5.65987 5.68688 5.83172 5.92398 6.47135 6.72961 7.07844 7.48318 7.56074 8.28452 8.56213 9.46354 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.010031 B = 0.007449 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.551652 B = 3758.018217 C = 5302.227185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.145 3.855 3 H 0.057 0.943 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.025 0.975 7 C -0.152 4.152 8 N -0.717 5.717 9 C -0.238 4.238 10 H 0.046 0.954 11 C -0.039 4.039 12 N -0.906 5.906 13 Si 0.929 3.071 14 H -0.290 1.290 15 H -0.305 1.305 16 H -0.293 1.293 17 N -0.679 5.679 18 C 0.602 3.398 19 O -0.575 6.575 20 C -0.039 4.039 21 N -0.196 5.196 22 N -0.272 5.272 23 C 0.083 3.917 24 C -0.004 4.004 25 C -0.136 4.136 26 Cl -0.029 7.029 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.375 0.625 36 H 0.244 0.756 37 H 0.406 0.594 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.121 0.879 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -2.776 4.589 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.076 0.924 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.043 0.957 7 C -0.211 4.211 8 N -0.360 5.360 9 C -0.370 4.370 10 H 0.064 0.936 11 C -0.235 4.235 12 N -0.555 5.555 13 Si 0.762 3.238 14 H -0.216 1.216 15 H -0.234 1.234 16 H -0.221 1.221 17 N -0.330 5.330 18 C 0.387 3.613 19 O -0.454 6.454 20 C -0.199 4.199 21 N -0.032 5.032 22 N -0.062 5.062 23 C -0.055 4.055 24 C -0.147 4.147 25 C -0.174 4.174 26 Cl -0.001 7.001 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.210 0.790 36 H 0.054 0.946 37 H 0.244 0.756 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.584 -2.861 4.059 9.917 hybrid contribution 1.550 0.677 1.131 2.035 sum -7.034 -2.183 5.189 9.009 Atomic orbital electron populations 1.22102 0.93765 1.02599 1.02395 1.20995 0.94412 0.96303 0.84220 0.92429 1.22118 0.94931 1.01413 0.97198 1.20478 0.92127 0.94302 0.87822 0.95658 1.22258 0.99941 1.00772 0.98170 1.42438 1.17652 1.40163 1.35742 1.19148 0.94543 1.12507 1.10849 0.93555 1.24918 0.99371 0.99691 0.99555 1.69757 1.36693 1.24015 1.25015 0.85767 0.83861 0.76821 0.77339 1.21576 1.23380 1.22096 1.45854 1.64487 1.14327 1.08313 1.16951 0.76579 0.85287 0.82482 1.90690 1.53357 1.15881 1.85521 1.21868 1.10907 0.91955 0.95199 1.73898 1.11495 1.15306 1.02538 1.45794 1.44184 1.11207 1.04980 1.22535 1.02640 0.77899 1.02408 1.23040 1.06060 0.85462 1.00141 1.21050 1.13213 0.89002 0.94139 1.98294 1.94855 1.15829 1.91121 0.94239 0.89309 0.91515 0.87175 0.90724 0.93347 0.91301 0.95409 0.78972 0.94644 0.75572 0.87095 0.89249 0.86046 0.75792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.48 71.98 0.68 -3.35 16 2 C 0.14 4.85 2.57 44.99 0.12 4.97 16 3 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 4 C -0.12 -3.46 4.43 30.60 0.14 -3.32 16 5 C 0.16 6.09 2.89 44.99 0.13 6.22 16 6 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 7 C -0.15 -5.08 9.49 71.98 0.68 -4.40 16 8 N -0.72 -33.32 3.84 -322.95 -1.24 -34.56 16 9 C -0.24 -12.87 9.93 84.03 0.83 -12.03 16 10 H 0.05 2.62 7.83 -2.91 -0.02 2.60 16 11 C -0.04 -2.13 5.50 84.86 0.47 -1.66 16 12 N -0.91 -47.56 12.35 21.65 0.27 -47.29 16 13 Si 0.93 46.05 29.55 68.60 2.03 48.07 16 14 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 15 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 N -0.68 -26.87 3.80 -445.57 -1.69 -28.56 16 18 C 0.60 27.02 7.79 86.74 0.68 27.69 16 19 O -0.58 -27.86 15.54 -3.95 -0.06 -27.92 16 20 C -0.04 -1.68 7.13 42.45 0.30 -1.38 16 21 N -0.20 -7.79 10.96 -48.17 -0.53 -8.32 16 22 N -0.27 -8.53 3.72 -368.87 -1.37 -9.91 16 23 C 0.08 1.72 11.32 127.77 1.45 3.16 16 24 C 0.00 -0.11 11.49 83.46 0.96 0.85 16 25 C -0.14 -5.17 6.80 22.45 0.15 -5.01 16 26 Cl -0.03 -1.06 28.17 -2.72 -0.08 -1.14 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.38 17.96 5.70 -92.71 -0.53 17.43 16 36 H 0.24 12.48 8.31 -92.71 -0.77 11.71 16 37 H 0.41 16.58 6.23 -92.71 -0.58 16.01 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.12 1.68 8.13 -2.39 -0.02 1.66 16 41 H 0.23 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -69.78 359.42 3.86 -65.92 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.05 Total: 31.96 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.58 Total: 11.73 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -4.56 Total: -128.63 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.06 Total: -27.92 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -69.78 3.86 -65.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134434443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.838 kcal (2) G-P(sol) polarization free energy of solvation -69.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds