Wall clock time and date at job start Tue Mar 31 2020 10:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47268 * 2 1 4 4 C 1.52994 * 109.47180 * 239.99829 * 2 1 3 5 5 C 1.53006 * 109.47467 * 174.99861 * 4 2 1 6 6 H 1.08997 * 109.46762 * 305.00602 * 5 4 2 7 7 C 1.52995 * 109.47386 * 185.00188 * 5 4 2 8 8 N 1.46500 * 109.46785 * 65.00045 * 5 4 2 9 9 C 1.36937 * 120.00298 * 205.00317 * 8 5 4 10 10 H 1.08006 * 119.99500 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00454 * 180.02562 * 9 8 5 12 12 N 1.31616 * 119.99577 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00071 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47293 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47366 * 120.00069 * 13 11 9 16 16 H 1.48500 * 109.47042 * 239.99680 * 13 11 9 17 17 N 1.46504 * 109.46930 * 120.00231 * 2 1 3 18 18 C 1.34777 * 119.99854 * 274.99613 * 17 2 1 19 19 O 1.21623 * 119.99973 * 0.02562 * 18 17 2 20 20 C 1.47300 * 119.99880 * 180.27792 * 18 17 2 21 21 C 1.41341 * 126.43795 * 359.75029 * 20 18 17 22 22 N 1.30406 * 108.04931 * 180.02562 * 21 20 18 23 23 N 1.39928 * 108.96069 * 0.02562 * 22 21 20 24 24 C 1.46502 * 125.74961 * 180.02562 * 23 22 21 25 25 C 1.34349 * 108.50297 * 359.72648 * 23 22 21 26 26 Cl 1.73598 * 126.32177 * 180.26421 * 25 23 22 27 27 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47470 * 299.99763 * 1 2 3 29 29 H 1.08993 * 109.47295 * 60.00323 * 1 2 3 30 30 H 1.09001 * 109.47710 * 294.99700 * 4 2 1 31 31 H 1.09003 * 109.47346 * 55.00017 * 4 2 1 32 32 H 1.08995 * 109.46991 * 179.97438 * 7 5 4 33 33 H 1.09002 * 109.47184 * 300.00306 * 7 5 4 34 34 H 1.08998 * 109.47030 * 60.00011 * 7 5 4 35 35 H 0.97006 * 120.00139 * 25.00324 * 8 5 4 36 36 H 0.97003 * 119.99585 * 179.97438 * 12 11 9 37 37 H 0.97000 * 120.00410 * 95.00338 * 17 2 1 38 38 H 1.07994 * 125.97267 * 359.96508 * 21 20 18 39 39 H 1.09000 * 109.47449 * 89.97618 * 24 23 22 40 40 H 1.09002 * 109.47276 * 209.97891 * 24 23 22 41 41 H 1.09003 * 109.47075 * 329.97141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3342 -0.1824 9 6 5.3943 -0.9856 0.2807 10 1 5.9385 -0.1789 -0.1879 11 6 5.9525 -1.6690 1.3523 12 7 5.2890 -2.6517 1.9235 13 14 7.6451 -1.1939 1.9835 14 1 8.1764 -0.0669 1.1755 15 1 7.5447 -0.7796 3.4060 16 1 8.5603 -2.3579 1.8705 17 7 2.0183 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3571 19 8 1.8574 1.1616 2.4119 20 6 2.6438 -0.7113 3.5583 21 6 3.0182 -2.0712 3.6484 22 7 3.4020 -2.3043 4.8728 23 7 3.2934 -1.1237 5.6159 24 6 3.6292 -0.9707 7.0337 25 6 2.8357 -0.1523 4.8085 26 17 2.5364 1.4988 5.2536 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 1.7517 -1.7716 -1.2056 31 1 1.6054 -0.2618 -2.1369 32 1 5.1507 -1.1477 -2.6701 33 1 3.7722 -2.2741 -2.6699 34 1 3.6263 -0.6886 -3.4657 35 1 3.6647 -2.0585 0.2387 36 1 5.6792 -3.1295 2.6721 37 1 2.2490 -1.6318 1.1526 38 1 2.9903 -2.7915 2.8443 39 1 4.6764 -0.6840 7.1302 40 1 2.9989 -0.1987 7.4751 41 1 3.4620 -1.9157 7.5506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134752568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:03 Heat of formation + Delta-G solvation = 31.926616 kcal Electronic energy + Delta-G solvation = -25509.469281 eV Core-core repulsion = 21872.990951 eV Total energy + Delta-G solvation = -3636.478331 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26495 -40.27783 -38.13426 -37.89696 -35.64730 -34.51964 -33.79694 -32.09563 -30.87188 -30.10612 -27.91775 -27.49511 -25.48684 -24.14866 -22.32958 -21.76911 -21.49189 -20.83056 -19.01375 -18.91303 -17.22506 -16.97096 -16.82054 -16.57646 -15.71780 -15.54998 -15.47249 -15.27441 -14.85675 -14.38742 -14.15211 -14.09556 -13.70765 -13.56347 -13.48652 -13.25166 -13.10008 -12.97906 -12.88199 -12.74319 -12.73113 -12.53959 -12.20878 -12.09293 -11.72892 -11.62561 -11.51444 -11.32181 -10.83213 -10.63868 -10.32000 -9.82901 -9.47407 -8.70586 -7.79377 -4.96902 0.27619 0.39388 1.34942 1.41292 1.46870 1.49926 1.68191 2.50398 2.63224 2.76902 3.51459 3.56705 3.90704 4.05970 4.09540 4.22584 4.28047 4.28616 4.45008 4.49178 4.56426 4.66306 4.70731 4.81737 4.92363 4.95776 5.02208 5.17202 5.22074 5.25457 5.46083 5.47656 5.51196 5.64970 5.68280 5.71516 5.93011 6.44280 6.51772 6.88839 7.54345 7.58686 8.26337 8.54544 9.41307 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.007098 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.155123 B = 3943.833193 C = 5598.497519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.057 0.943 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.027 0.973 7 C -0.153 4.153 8 N -0.716 5.716 9 C -0.221 4.221 10 H 0.051 0.949 11 C -0.041 4.041 12 N -0.925 5.925 13 Si 0.930 3.070 14 H -0.285 1.285 15 H -0.312 1.312 16 H -0.298 1.298 17 N -0.687 5.687 18 C 0.597 3.403 19 O -0.586 6.586 20 C -0.284 4.284 21 C 0.145 3.855 22 N -0.303 5.303 23 N -0.359 5.359 24 C 0.083 3.917 25 C 0.164 3.836 26 Cl 0.024 6.976 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.026 0.974 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.376 0.624 36 H 0.246 0.754 37 H 0.402 0.598 38 H 0.200 0.800 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 2.047 3.038 10.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.075 0.925 4 C -0.157 4.157 5 C 0.054 3.946 6 H 0.045 0.955 7 C -0.213 4.213 8 N -0.359 5.359 9 C -0.354 4.354 10 H 0.069 0.931 11 C -0.235 4.235 12 N -0.575 5.575 13 Si 0.765 3.235 14 H -0.210 1.210 15 H -0.241 1.241 16 H -0.225 1.225 17 N -0.338 5.338 18 C 0.385 3.615 19 O -0.469 6.469 20 C -0.300 4.300 21 C -0.042 4.042 22 N -0.124 5.124 23 N -0.141 5.141 24 C -0.056 4.056 25 C 0.004 3.996 26 Cl 0.052 6.948 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.211 0.789 36 H 0.056 0.944 37 H 0.240 0.760 38 H 0.217 0.783 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.834 2.230 4.071 10.874 hybrid contribution 1.425 0.403 0.258 1.503 sum -8.409 2.633 4.329 9.817 Atomic orbital electron populations 1.22101 0.93984 1.02634 1.02208 1.20915 0.94202 0.96268 0.84155 0.92523 1.22121 0.94745 1.01618 0.97250 1.20481 0.92210 0.94348 0.87589 0.95468 1.22266 0.99945 1.00851 0.98225 1.42445 1.17545 1.40100 1.35783 1.19212 0.94368 1.11869 1.09928 0.93110 1.24774 0.99414 0.99652 0.99703 1.69506 1.37506 1.24666 1.25835 0.85724 0.83964 0.76820 0.77037 1.21028 1.24081 1.22539 1.45727 1.65562 1.14074 1.08414 1.17079 0.76198 0.85382 0.82858 1.90678 1.53933 1.16276 1.85983 1.20058 1.20041 0.95869 0.94011 1.24005 0.91361 0.94673 0.94135 1.77259 1.25943 1.03172 1.06069 1.48842 1.48893 1.05257 1.11152 1.22369 1.03185 1.06354 0.73666 1.22102 1.00179 0.85559 0.91733 1.98395 1.93652 1.10411 1.92310 0.91372 0.94253 0.89707 0.90411 0.87431 0.95425 0.93241 0.91427 0.78942 0.94436 0.76020 0.78346 0.89650 0.87143 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.48 71.98 0.68 -3.02 16 2 C 0.15 4.56 2.57 44.99 0.12 4.68 16 3 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 4 C -0.12 -3.17 4.43 30.59 0.14 -3.03 16 5 C 0.16 5.70 2.89 44.99 0.13 5.83 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -4.84 9.49 71.98 0.68 -4.15 16 8 N -0.72 -31.08 3.84 -322.94 -1.24 -32.32 16 9 C -0.22 -11.42 9.93 84.03 0.83 -10.59 16 10 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 11 C -0.04 -2.16 5.50 84.86 0.47 -1.69 16 12 N -0.92 -48.07 10.86 21.65 0.24 -47.84 16 13 Si 0.93 46.27 29.55 68.60 2.03 48.30 16 14 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 15 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 16 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 17 N -0.69 -24.59 3.79 -445.93 -1.69 -26.28 16 18 C 0.60 24.72 7.77 86.63 0.67 25.39 16 19 O -0.59 -26.42 15.31 -4.10 -0.06 -26.48 16 20 C -0.28 -11.54 6.13 -20.12 -0.12 -11.67 16 21 C 0.14 5.76 10.10 85.67 0.87 6.63 16 22 N -0.30 -11.71 12.49 -56.26 -0.70 -12.42 16 23 N -0.36 -12.12 3.98 -357.39 -1.42 -13.54 16 24 C 0.08 1.83 11.28 127.77 1.44 3.27 16 25 C 0.16 6.08 7.53 84.32 0.63 6.72 16 26 Cl 0.02 0.79 27.35 -2.72 -0.07 0.71 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.38 16.42 5.70 -92.70 -0.53 15.90 16 36 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 37 H 0.40 14.28 5.46 -92.71 -0.51 13.78 16 38 H 0.20 7.91 6.78 -2.91 -0.02 7.89 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 1.85 7.78 -2.39 -0.02 1.83 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -64.35 354.55 3.63 -60.72 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.02 Total: 30.79 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.54 Total: 18.36 kcal Atomic # 7 Polarization: -127.58 SS G_CDS: -4.82 Total: -132.40 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.48 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -0.07 Total: 0.71 kcal Total: -64.35 3.63 -60.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134752568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.651 kcal (2) G-P(sol) polarization free energy of solvation -64.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds