Wall clock time and date at job start Tue Mar 31 2020 10:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 H 1.09004 * 109.46656 * 304.99461 * 5 4 2 7 7 C 1.52999 * 109.47235 * 185.00066 * 5 4 2 8 8 N 1.46495 * 109.47317 * 64.99221 * 5 4 2 9 9 C 1.34777 * 120.00230 * 204.99663 * 8 5 4 10 10 O 1.21625 * 119.99782 * 0.02562 * 9 8 5 11 11 C 1.47294 * 120.00472 * 180.02562 * 9 8 5 12 12 C 1.41347 * 126.43372 * 359.68773 * 11 9 8 13 13 N 1.30410 * 108.04576 * 179.85832 * 12 11 9 14 14 N 1.39927 * 108.96158 * 0.40947 * 13 12 11 15 15 C 1.46498 * 125.74708 * 179.73159 * 14 13 12 16 16 C 1.34343 * 108.49997 * 359.74029 * 14 13 12 17 17 Cl 1.73599 * 126.31879 * 179.97438 * 16 14 13 18 18 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 19 19 C 1.36931 * 119.99788 * 84.99932 * 18 2 1 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 2 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 2 22 22 N 1.31617 * 119.99873 * 180.27450 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.27770 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00079 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99901 * 23 21 19 27 27 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 28 28 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 30 30 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 31 31 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 32 32 H 1.09005 * 109.46583 * 299.99807 * 7 5 4 33 33 H 1.09001 * 109.47265 * 59.99339 * 7 5 4 34 34 H 1.08991 * 109.47415 * 179.97438 * 7 5 4 35 35 H 0.97000 * 120.00046 * 25.00827 * 8 5 4 36 36 H 1.08003 * 125.97357 * 0.02562 * 12 11 9 37 37 H 1.08992 * 109.47638 * 270.00297 * 15 14 13 38 38 H 1.09005 * 109.46915 * 30.00705 * 15 14 13 39 39 H 1.09005 * 109.46892 * 150.00065 * 15 14 13 40 40 H 0.97000 * 119.99792 * 264.99726 * 18 2 1 41 41 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1612 1.2136 1.0867 10 8 5.9378 0.4319 0.5719 11 6 5.5466 2.6238 1.2668 12 6 4.7537 3.6442 1.8394 13 7 5.4449 4.7499 1.8235 14 7 6.6917 4.4982 1.2404 15 6 7.7547 5.4850 1.0336 16 6 6.7497 3.1994 0.9019 17 17 8.0879 2.3928 0.1455 18 7 2.0183 -0.6907 -1.1962 19 6 2.1491 -0.0075 -2.3757 20 1 1.8926 1.0405 -2.4242 21 6 2.6172 -0.6605 -3.5077 22 7 2.7480 -0.0026 -4.6401 23 14 3.0615 -2.4730 -3.4239 24 1 1.8659 -3.2913 -3.7497 25 1 4.1416 -2.7636 -4.4007 26 1 3.5302 -2.8049 -2.0543 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2618 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 3.6546 -1.0593 3.4193 33 1 3.8002 -2.4819 2.3595 34 1 5.1715 -1.3617 2.5381 35 1 3.3284 1.4129 1.9028 36 1 3.7517 3.5278 2.2253 37 1 7.6308 5.9534 0.0572 38 1 7.6998 6.2465 1.8115 39 1 8.7244 4.9891 1.0782 40 1 2.2490 -1.6318 -1.1526 41 1 3.0748 -0.4589 -5.4313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134752569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:07 Heat of formation + Delta-G solvation = 19.124846 kcal Electronic energy + Delta-G solvation = -24482.421681 eV Core-core repulsion = 20845.388224 eV Total energy + Delta-G solvation = -3637.033457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.51781 -40.41488 -38.29220 -38.01896 -36.02424 -34.63816 -33.98278 -32.27772 -31.20187 -30.75772 -28.08935 -27.52793 -25.32035 -24.32054 -22.55328 -21.95895 -21.41656 -21.11742 -19.72818 -19.09844 -17.33056 -17.12067 -17.02331 -16.59574 -15.94448 -15.77829 -15.59930 -15.23737 -15.00362 -14.61980 -14.46822 -14.24757 -13.95809 -13.79890 -13.64572 -13.36885 -13.17029 -13.13779 -12.97464 -12.86588 -12.74024 -12.56964 -12.34180 -11.95528 -11.92336 -11.81181 -11.61841 -11.37809 -10.92928 -10.82632 -10.57375 -10.05025 -9.69062 -9.21968 -7.97880 -5.27084 0.12216 0.22811 1.03437 1.35856 1.41077 1.46357 1.48506 2.34574 2.49708 2.51449 3.31433 3.35672 3.71904 3.82058 3.86170 3.93959 4.16158 4.26254 4.31711 4.42997 4.48918 4.56143 4.60732 4.74591 4.84183 4.90081 4.97860 5.07650 5.14272 5.16023 5.30517 5.40435 5.41756 5.46392 5.66825 5.72925 5.84672 6.23234 6.27248 6.74998 7.15657 7.45143 7.95207 8.10376 9.24604 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.004555 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.003011 B = 6146.233264 C = 6855.541158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.044 0.956 4 C -0.120 4.120 5 C 0.145 3.855 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.699 5.699 9 C 0.585 3.415 10 O -0.577 6.577 11 C -0.289 4.289 12 C 0.101 3.899 13 N -0.287 5.287 14 N -0.351 5.351 15 C 0.079 3.921 16 C 0.168 3.832 17 Cl 0.023 6.977 18 N -0.749 5.749 19 C -0.209 4.209 20 H 0.053 0.947 21 C -0.069 4.069 22 N -0.989 5.989 23 Si 0.947 3.053 24 H -0.275 1.275 25 H -0.305 1.305 26 H -0.255 1.255 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.411 0.589 36 H 0.235 0.765 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.361 0.639 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 7.687 21.446 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.062 0.938 4 C -0.159 4.159 5 C 0.040 3.960 6 H 0.067 0.933 7 C -0.209 4.209 8 N -0.351 5.351 9 C 0.372 3.628 10 O -0.457 6.457 11 C -0.306 4.306 12 C -0.086 4.086 13 N -0.109 5.109 14 N -0.133 5.133 15 C -0.060 4.060 16 C 0.008 3.992 17 Cl 0.051 6.949 18 N -0.392 5.392 19 C -0.340 4.340 20 H 0.071 0.929 21 C -0.259 4.259 22 N -0.641 5.641 23 Si 0.776 3.224 24 H -0.201 1.201 25 H -0.233 1.233 26 H -0.180 1.180 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.194 0.806 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.585 8.599 21.189 23.797 hybrid contribution 0.473 -1.558 -1.249 2.052 sum 7.058 7.041 19.940 22.293 Atomic orbital electron populations 1.22283 0.97246 1.01332 1.00792 1.20533 0.92801 0.95513 0.85306 0.93763 1.22144 0.92595 1.02690 0.98425 1.20901 0.95691 0.80867 0.98543 0.93342 1.22089 1.00437 1.00225 0.98190 1.45540 1.15661 1.11575 1.62280 1.17330 0.82317 0.85929 0.77175 1.90790 1.52707 1.56910 1.45296 1.20039 0.95923 0.96346 1.18250 1.24531 1.00754 0.87481 0.95815 1.77269 0.90905 1.23052 1.19624 1.48862 1.14277 1.05573 1.44562 1.22500 0.86623 0.91279 1.05617 1.22228 0.92530 0.86322 0.98089 1.98450 1.41633 1.76403 1.78374 1.42839 1.79741 1.09436 1.07202 1.18964 1.33559 0.94129 0.87381 0.92877 1.25400 1.02964 1.02059 0.95511 1.69878 1.55511 1.37422 1.01292 0.85508 0.77466 0.81716 0.77740 1.20148 1.23260 1.17978 0.95730 0.93091 0.90117 0.86851 0.89639 0.89879 0.90925 0.94440 0.75194 0.74910 0.88601 0.86111 0.87600 0.80565 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.49 71.98 0.68 -4.05 16 2 C 0.17 5.61 2.84 44.99 0.13 5.74 16 3 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 4 C -0.12 -2.90 4.29 30.60 0.13 -2.77 16 5 C 0.14 4.15 2.52 44.99 0.11 4.27 16 6 H 0.05 1.94 7.05 -2.38 -0.02 1.92 16 7 C -0.15 -3.48 9.48 71.98 0.68 -2.80 16 8 N -0.70 -18.85 4.44 -445.92 -1.98 -20.83 16 9 C 0.59 19.89 7.77 86.63 0.67 20.57 16 10 O -0.58 -24.72 15.31 -4.11 -0.06 -24.79 16 11 C -0.29 -8.40 6.13 -20.12 -0.12 -8.53 16 12 C 0.10 2.20 11.50 85.67 0.99 3.19 16 13 N -0.29 -6.72 12.49 -56.25 -0.70 -7.42 16 14 N -0.35 -7.97 3.98 -357.41 -1.42 -9.40 16 15 C 0.08 1.02 11.28 127.77 1.44 2.46 16 16 C 0.17 4.73 7.53 84.32 0.63 5.37 16 17 Cl 0.02 0.66 27.34 -2.72 -0.07 0.58 16 18 N -0.75 -34.37 4.30 -322.93 -1.39 -35.76 16 19 C -0.21 -12.11 10.41 84.04 0.87 -11.24 16 20 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 21 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 22 N -0.99 -66.23 13.97 21.65 0.30 -65.93 16 23 Si 0.95 48.31 27.74 68.60 1.90 50.21 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 26 H -0.25 -11.96 6.51 99.48 0.65 -11.31 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.41 7.75 7.55 -92.71 -0.70 7.05 16 36 H 0.23 2.91 7.50 -2.91 -0.02 2.89 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.11 1.06 7.77 -2.38 -0.02 1.04 16 40 H 0.36 16.32 5.66 -92.71 -0.52 15.79 16 41 H 0.25 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -84.47 359.93 3.04 -81.43 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.23 Total: 23.45 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.69 Total: 8.44 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -5.19 Total: -139.33 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.06 Total: -24.79 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.90 Total: 50.21 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -0.07 Total: 0.58 kcal Total: -84.47 3.04 -81.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134752569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.551 kcal (2) G-P(sol) polarization free energy of solvation -84.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds