Wall clock time and date at job start Tue Mar 31 2020 10:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47044 * 2 1 4 4 C 1.52996 * 109.47497 * 240.00048 * 2 1 3 5 5 C 1.52997 * 109.47353 * 173.93213 * 4 2 1 6 6 H 1.09001 * 109.46929 * 306.17349 * 5 4 2 7 7 C 1.52998 * 109.46917 * 186.17896 * 5 4 2 8 8 N 1.46495 * 109.47140 * 66.18150 * 5 4 2 9 9 C 1.34777 * 120.00043 * 208.44465 * 8 5 4 10 10 O 1.21697 * 119.99933 * 5.08839 * 9 8 5 11 11 C 1.46661 * 120.00384 * 185.09393 * 9 8 5 12 12 C 1.36669 * 126.84011 * 5.47290 * 11 9 8 13 13 N 1.33303 * 107.83175 * 179.97438 * 12 11 9 14 14 C 1.31022 * 109.70148 * 0.02562 * 13 12 11 15 15 Cl 1.73599 * 125.43264 * 180.02562 * 14 13 12 16 16 N 1.34607 * 109.12976 * 359.74632 * 14 13 12 17 17 C 1.46499 * 126.48789 * 180.28628 * 16 14 13 18 18 N 1.46501 * 109.47056 * 120.00012 * 2 1 3 19 19 C 1.36940 * 120.00103 * 271.99332 * 18 2 1 20 20 H 1.08002 * 119.99657 * 359.97438 * 19 18 2 21 21 C 1.38812 * 119.99979 * 180.02562 * 19 18 2 22 22 N 1.31613 * 120.00029 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99800 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47023 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47037 * 119.99836 * 23 21 19 26 26 H 1.48505 * 109.47114 * 239.99916 * 23 21 19 27 27 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47407 * 300.00073 * 1 2 3 29 29 H 1.08999 * 109.47527 * 59.99944 * 1 2 3 30 30 H 1.09003 * 109.46949 * 293.93300 * 4 2 1 31 31 H 1.09004 * 109.47076 * 53.93130 * 4 2 1 32 32 H 1.09001 * 109.47396 * 59.99823 * 7 5 4 33 33 H 1.09007 * 109.47016 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47381 * 299.99634 * 7 5 4 35 35 H 0.96995 * 120.00438 * 28.43437 * 8 5 4 36 36 H 1.08001 * 126.08714 * 359.94326 * 12 11 9 37 37 H 1.09007 * 109.46971 * 273.27515 * 17 16 14 38 38 H 1.08992 * 109.47479 * 33.27668 * 17 16 14 39 39 H 1.09000 * 109.46705 * 153.28150 * 17 16 14 40 40 H 0.97004 * 120.00288 * 91.99064 * 18 2 1 41 41 H 0.97003 * 120.00136 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5624 -0.5905 -1.3277 6 1 3.8401 0.4620 -1.2699 7 6 4.0569 -1.1763 -2.6518 8 7 4.1732 -1.3189 -0.2131 9 6 5.3627 -0.9215 0.2804 10 8 5.8854 0.0954 -0.1365 11 6 6.0274 -1.7145 1.3198 12 6 5.6230 -2.9236 1.8122 13 7 6.5024 -3.3013 2.7401 14 6 7.4386 -2.3922 2.8573 15 17 8.7874 -2.4713 3.9475 16 7 7.1912 -1.3901 1.9934 17 6 8.0001 -0.1835 1.8039 18 7 2.0183 -0.6906 1.1962 19 6 2.2076 0.0061 2.3598 20 1 1.9973 1.0649 2.3955 21 6 2.6708 -0.6482 3.4930 22 7 2.9275 -1.9383 3.4493 23 14 2.9298 0.3025 5.0800 24 1 2.5716 1.7278 4.8673 25 1 2.0697 -0.2707 6.1464 26 1 4.3545 0.2062 5.4879 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.7681 -1.7755 -1.1965 31 1 1.5907 -0.2739 -2.1359 32 1 3.6024 -0.6344 -3.4812 33 1 5.1416 -1.0836 -2.7076 34 1 3.7792 -2.2287 -2.7097 35 1 3.7215 -2.0871 0.1699 36 1 4.7467 -3.4748 1.5046 37 1 7.6864 0.5798 2.5160 38 1 9.0513 -0.4216 1.9661 39 1 7.8644 0.1891 0.7886 40 1 2.2075 -1.6415 1.1640 41 1 3.2509 -2.3956 4.2413 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134989467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:40 Heat of formation + Delta-G solvation = 14.506712 kcal Electronic energy + Delta-G solvation = -25522.409301 eV Core-core repulsion = 21885.175587 eV Total energy + Delta-G solvation = -3637.233714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.21533 -40.48135 -38.23654 -38.06617 -35.88822 -35.13557 -33.99548 -32.46371 -30.56461 -29.87036 -28.13484 -27.52436 -25.50371 -24.62643 -22.75205 -21.82958 -21.60369 -20.90731 -19.06457 -18.98524 -17.51747 -17.28483 -17.11554 -16.63911 -15.92840 -15.61950 -15.49993 -15.40422 -15.10621 -14.59735 -14.25757 -14.18930 -14.13874 -13.75180 -13.54796 -13.30558 -13.18339 -12.93145 -12.86738 -12.76018 -12.68383 -12.57842 -12.24434 -12.12254 -11.66158 -11.57798 -11.44704 -11.35779 -10.90295 -10.86274 -10.79278 -9.92194 -9.46341 -8.75122 -7.80775 -5.00267 0.09598 0.24037 1.38163 1.43956 1.47538 1.64150 1.69240 2.38165 2.55671 2.60070 3.53642 3.60155 3.75536 3.88264 4.01847 4.11542 4.20546 4.23472 4.39524 4.44654 4.52758 4.62662 4.74937 4.88916 4.91732 4.93779 4.98126 5.14412 5.18973 5.21490 5.41470 5.42825 5.47645 5.64394 5.67789 5.71307 5.77582 6.40107 6.58009 6.71044 7.30473 7.51138 8.25019 8.51913 9.38507 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.006336 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.980976 B = 4418.388850 C = 5983.560509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.030 0.970 4 C -0.120 4.120 5 C 0.148 3.852 6 H 0.063 0.937 7 C -0.152 4.152 8 N -0.674 5.674 9 C 0.606 3.394 10 O -0.589 6.589 11 C -0.074 4.074 12 C 0.084 3.916 13 N -0.493 5.493 14 C 0.245 3.755 15 Cl 0.054 6.946 16 N -0.420 5.420 17 C 0.061 3.939 18 N -0.717 5.717 19 C -0.224 4.224 20 H 0.051 0.949 21 C -0.042 4.042 22 N -0.923 5.923 23 Si 0.927 3.073 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.310 1.310 27 H 0.048 0.952 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.190 0.810 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.376 0.624 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 -0.784 -10.497 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.048 0.952 4 C -0.159 4.159 5 C 0.044 3.956 6 H 0.081 0.919 7 C -0.210 4.210 8 N -0.323 5.323 9 C 0.393 3.607 10 O -0.472 6.472 11 C -0.191 4.191 12 C -0.070 4.070 13 N -0.216 5.216 14 C -0.041 4.041 15 Cl 0.082 6.918 16 N -0.104 5.104 17 C -0.080 4.080 18 N -0.359 5.359 19 C -0.357 4.357 20 H 0.069 0.931 21 C -0.238 4.238 22 N -0.573 5.573 23 Si 0.761 3.239 24 H -0.207 1.207 25 H -0.226 1.226 26 H -0.239 1.239 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.244 0.756 36 H 0.207 0.793 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.210 0.790 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.951 -0.488 -10.187 12.343 hybrid contribution 0.184 0.784 1.687 1.869 sum 7.135 0.297 -8.501 11.102 Atomic orbital electron populations 1.22285 0.97890 1.00995 1.00257 1.20492 0.92556 0.94938 0.86637 0.95224 1.22158 0.92785 1.02258 0.98680 1.21034 0.93135 0.96178 0.85271 0.91856 1.22128 1.00681 1.02232 0.95966 1.45562 1.18587 1.33325 1.34819 1.16545 0.81652 0.82957 0.79588 1.90667 1.67014 1.26294 1.63247 1.20832 0.92783 1.00323 1.05121 1.22565 0.97769 0.93511 0.93116 1.69961 1.03724 1.28094 1.19784 1.23371 0.96351 0.88730 0.95643 1.98387 1.37340 1.97749 1.58334 1.45073 1.19678 1.17921 1.27767 1.22498 0.95743 0.83881 1.05836 1.42419 1.78515 1.08308 1.06689 1.19172 1.34985 0.92106 0.89438 0.93092 1.24856 1.03771 0.96434 0.98704 1.69587 1.52300 1.07240 1.28149 0.85779 0.76029 0.78548 0.83586 1.20717 1.22554 1.23890 0.93285 0.95540 0.91294 0.90333 0.87179 0.89358 0.94090 0.91085 0.75613 0.79322 0.90293 0.86606 0.87636 0.79027 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.51 71.98 0.68 -4.08 16 2 C 0.16 5.53 2.89 44.99 0.13 5.66 16 3 H 0.03 1.13 8.05 -2.39 -0.02 1.11 16 4 C -0.12 -2.99 4.42 30.59 0.14 -2.86 16 5 C 0.15 4.14 2.65 44.99 0.12 4.26 16 6 H 0.06 2.11 7.40 -2.39 -0.02 2.09 16 7 C -0.15 -3.25 9.51 71.98 0.68 -2.57 16 8 N -0.67 -22.42 3.69 -446.53 -1.65 -24.07 16 9 C 0.61 23.45 7.77 86.44 0.67 24.12 16 10 O -0.59 -24.61 14.38 -4.34 -0.06 -24.68 16 11 C -0.07 -2.90 6.91 39.95 0.28 -2.62 16 12 C 0.08 3.29 11.36 84.10 0.96 4.25 16 13 N -0.49 -19.72 11.21 -190.25 -2.13 -21.86 16 14 C 0.25 8.84 8.48 180.25 1.53 10.37 16 15 Cl 0.05 1.52 28.81 -2.72 -0.08 1.44 16 16 N -0.42 -15.04 3.18 -528.39 -1.68 -16.72 16 17 C 0.06 1.74 10.61 127.77 1.36 3.09 16 18 N -0.72 -30.87 3.78 -322.95 -1.22 -32.10 16 19 C -0.22 -11.60 9.94 84.03 0.83 -10.76 16 20 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 21 C -0.04 -2.29 5.50 84.86 0.47 -1.82 16 22 N -0.92 -49.93 13.06 21.65 0.28 -49.65 16 23 Si 0.93 46.58 29.55 68.60 2.03 48.61 16 24 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 26 H -0.31 -16.24 7.11 99.48 0.71 -15.54 16 27 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.41 13.53 5.93 -92.71 -0.55 12.98 16 36 H 0.19 6.89 7.50 -2.91 -0.02 6.87 16 37 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.12 2.42 7.89 -2.39 -0.02 2.40 16 39 H 0.11 3.16 6.24 -2.39 -0.01 3.15 16 40 H 0.38 16.49 6.12 -92.71 -0.57 15.92 16 41 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -64.42 357.08 3.27 -61.14 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.06 Total: 30.84 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 7.84 Total: 27.03 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -6.40 Total: -144.39 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 17 Polarization: 1.52 SS G_CDS: -0.08 Total: 1.44 kcal Total: -64.42 3.27 -61.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134989467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.648 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds