Wall clock time and date at job start Tue Mar 31 2020 10:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 C 1.53009 * 109.46705 * 240.00369 * 2 1 3 5 5 C 1.53003 * 109.46602 * 175.00070 * 4 2 1 6 6 H 1.08995 * 109.47706 * 54.99622 * 5 4 2 7 7 C 1.52997 * 109.46686 * 174.99751 * 5 4 2 8 8 N 1.46497 * 109.46931 * 294.99493 * 5 4 2 9 9 C 1.34781 * 120.00132 * 155.00599 * 8 5 4 10 10 O 1.21701 * 119.99786 * 354.66133 * 9 8 5 11 11 C 1.46659 * 120.00262 * 174.94479 * 9 8 5 12 12 C 1.36676 * 126.84089 * 4.72767 * 11 9 8 13 13 N 1.33299 * 107.82596 * 179.89997 * 12 11 9 14 14 C 1.31026 * 109.70822 * 0.37676 * 13 12 11 15 15 Cl 1.73601 * 125.43415 * 179.76293 * 14 13 12 16 16 N 1.34598 * 109.12630 * 359.77011 * 14 13 12 17 17 C 1.46499 * 126.48813 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47217 * 120.00052 * 2 1 3 19 19 C 1.36934 * 120.00097 * 274.99750 * 18 2 1 20 20 H 1.07994 * 119.99895 * 0.02562 * 19 18 2 21 21 C 1.38809 * 120.00195 * 180.02562 * 19 18 2 22 22 N 1.31627 * 119.99719 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00386 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46752 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47340 * 119.99630 * 23 21 19 26 26 H 1.48502 * 109.46939 * 240.00218 * 23 21 19 27 27 H 1.09006 * 109.47612 * 59.99963 * 1 2 3 28 28 H 1.09007 * 109.47314 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47273 * 300.00171 * 1 2 3 30 30 H 1.08995 * 109.47415 * 55.00153 * 4 2 1 31 31 H 1.09000 * 109.46594 * 294.99092 * 4 2 1 32 32 H 1.09005 * 109.47086 * 179.97438 * 7 5 4 33 33 H 1.08997 * 109.47280 * 299.99586 * 7 5 4 34 34 H 1.08999 * 109.47515 * 60.00184 * 7 5 4 35 35 H 0.96995 * 120.00130 * 335.00107 * 8 5 4 36 36 H 1.07996 * 126.08666 * 0.04139 * 12 11 9 37 37 H 1.09001 * 109.46959 * 273.48216 * 17 16 14 38 38 H 1.08993 * 109.47238 * 33.47898 * 17 16 14 39 39 H 1.09000 * 109.47501 * 153.48015 * 17 16 14 40 40 H 0.97004 * 119.99752 * 95.00547 * 18 2 1 41 41 H 0.97000 * 119.99454 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6133 -1.3138 6 1 3.9953 -0.9922 -0.3870 7 6 4.0849 -1.4382 -2.4926 8 7 3.9478 0.7894 -1.4926 9 6 5.1611 1.2136 -1.0869 10 8 5.9004 0.4570 -0.4853 11 6 5.5879 2.5889 -1.3650 12 6 4.8408 3.5783 -1.9403 13 7 5.5981 4.6730 -2.0106 14 6 6.7854 4.4213 -1.5168 15 17 8.0938 5.5576 -1.4129 16 7 6.8287 3.1413 -1.1030 17 6 7.9733 2.4616 -0.4914 18 7 2.0183 -0.6906 1.1961 19 6 2.1491 -0.0075 2.3757 20 1 1.8919 1.0402 2.4243 21 6 2.6123 -0.6617 3.5089 22 7 2.9253 -1.9388 3.4498 23 14 2.7902 0.2699 5.1182 24 1 2.3753 1.6821 4.9210 25 1 1.9300 -0.3594 6.1522 26 1 4.2072 0.2280 5.5605 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6053 -0.2617 -2.1371 31 1 1.7516 -1.7715 -1.2056 32 1 5.1713 -1.3610 -2.5388 33 1 3.7999 -2.4818 -2.3596 34 1 3.6544 -1.0593 -3.4195 35 1 3.3283 1.4128 -1.9029 36 1 3.8181 3.4897 -2.2759 37 1 8.6154 2.0562 -1.2733 38 1 8.5389 3.1728 0.1107 39 1 7.6174 1.6503 0.1435 40 1 2.2491 -1.6318 1.1525 41 1 3.2494 -2.3959 4.2416 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134989470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:54 Heat of formation + Delta-G solvation = 2.760870 kcal Electronic energy + Delta-G solvation = -24459.668213 eV Core-core repulsion = 20821.925161 eV Total energy + Delta-G solvation = -3637.743052 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.42424 -40.61211 -38.29961 -38.13080 -36.18566 -35.26446 -34.03387 -32.60057 -30.57909 -30.17094 -28.26576 -27.56114 -25.67007 -24.76753 -22.91508 -22.04519 -21.35493 -21.14589 -19.39083 -19.03585 -17.63432 -17.42921 -17.24070 -16.63849 -15.98055 -15.83077 -15.60939 -15.55779 -15.18747 -14.73180 -14.46247 -14.27109 -14.22551 -13.84468 -13.58237 -13.35198 -13.17034 -12.95089 -12.94314 -12.78215 -12.72438 -12.64454 -12.23191 -12.14860 -11.80099 -11.63950 -11.53519 -11.38611 -11.06297 -10.98803 -10.90699 -10.11562 -9.67388 -8.92266 -7.91227 -5.15548 0.00932 0.05358 1.41994 1.43168 1.47232 1.50390 1.51447 2.20059 2.28440 2.56341 3.43422 3.43823 3.64613 3.77034 3.87387 4.04972 4.15067 4.17356 4.21277 4.45099 4.50644 4.58160 4.71898 4.82043 4.83844 4.88212 4.97563 5.08228 5.15233 5.20174 5.25753 5.39187 5.44625 5.51073 5.53031 5.63919 5.68278 6.32818 6.39772 6.56465 7.19809 7.38731 8.19868 8.38860 9.32723 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.004178 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.771984 B = 6700.760239 C = 7864.431927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.118 4.118 5 C 0.149 3.851 6 H 0.052 0.948 7 C -0.151 4.151 8 N -0.686 5.686 9 C 0.590 3.410 10 O -0.578 6.578 11 C -0.083 4.083 12 C 0.059 3.941 13 N -0.489 5.489 14 C 0.253 3.747 15 Cl 0.061 6.939 16 N -0.417 5.417 17 C 0.056 3.944 18 N -0.731 5.731 19 C -0.221 4.221 20 H 0.068 0.932 21 C -0.076 4.076 22 N -0.967 5.967 23 Si 0.956 3.044 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.301 1.301 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.027 0.973 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.415 0.585 36 H 0.223 0.777 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.371 0.629 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 10.652 -17.284 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.156 4.156 5 C 0.045 3.955 6 H 0.070 0.930 7 C -0.209 4.209 8 N -0.337 5.337 9 C 0.377 3.623 10 O -0.459 6.459 11 C -0.200 4.200 12 C -0.096 4.096 13 N -0.211 5.211 14 C -0.034 4.034 15 Cl 0.088 6.912 16 N -0.100 5.100 17 C -0.085 4.085 18 N -0.372 5.372 19 C -0.354 4.354 20 H 0.086 0.914 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.787 3.213 24 H -0.194 1.194 25 H -0.220 1.220 26 H -0.229 1.229 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.253 0.747 36 H 0.239 0.761 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.202 0.798 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.263 11.020 -16.988 21.195 hybrid contribution 0.620 -0.528 1.768 1.946 sum 6.883 10.492 -15.220 19.726 Atomic orbital electron populations 1.22314 0.97776 1.00847 1.00735 1.20549 0.92617 0.95357 0.86054 0.93796 1.22096 0.92463 1.02473 0.98599 1.20917 0.95882 0.79952 0.98766 0.92978 1.22094 1.00362 1.00339 0.98137 1.45459 1.14892 1.11990 1.61370 1.16865 0.82780 0.84402 0.78268 1.90812 1.55221 1.57568 1.42299 1.20867 0.87946 0.96929 1.14247 1.23219 1.00962 0.86140 0.99260 1.70082 1.00546 1.28806 1.21701 1.23478 0.93201 0.82871 1.03804 1.98430 1.41049 1.54886 1.96794 1.45202 1.12190 1.09187 1.43425 1.22567 0.86084 0.99476 1.00356 1.42612 1.78148 1.10128 1.06265 1.19517 1.33609 0.93717 0.88526 0.91390 1.25359 1.03739 0.96787 1.00930 1.69798 1.53255 1.09983 1.28894 0.85311 0.76491 0.78354 0.81153 1.19377 1.21956 1.22908 0.90314 0.93943 0.95391 0.87082 0.90298 0.94344 0.90957 0.89702 0.74734 0.76081 0.87903 0.87090 0.88998 0.79768 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16 2 C 0.16 5.62 2.84 44.99 0.13 5.75 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -3.03 4.29 30.60 0.13 -2.90 16 5 C 0.15 4.34 2.56 44.99 0.12 4.46 16 6 H 0.05 2.17 6.98 -2.39 -0.02 2.16 16 7 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 8 N -0.69 -17.82 4.43 -446.52 -1.98 -19.80 16 9 C 0.59 18.86 7.74 86.44 0.67 19.53 16 10 O -0.58 -23.59 14.43 -4.35 -0.06 -23.65 16 11 C -0.08 -2.27 6.91 39.95 0.28 -2.00 16 12 C 0.06 1.34 11.37 84.10 0.96 2.30 16 13 N -0.49 -12.65 11.21 -190.25 -2.13 -14.78 16 14 C 0.25 6.21 8.48 180.25 1.53 7.73 16 15 Cl 0.06 1.13 28.81 -2.72 -0.08 1.05 16 16 N -0.42 -10.79 3.18 -528.39 -1.68 -12.47 16 17 C 0.06 1.23 10.62 127.77 1.36 2.58 16 18 N -0.73 -35.33 4.49 -322.96 -1.45 -36.78 16 19 C -0.22 -12.27 9.93 84.03 0.83 -11.43 16 20 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 22 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 23 Si 0.96 47.84 29.55 68.60 2.03 49.86 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 27 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 7.53 7.54 -92.71 -0.70 6.83 16 36 H 0.22 3.16 7.46 -2.91 -0.02 3.13 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.11 1.85 7.89 -2.39 -0.02 1.83 16 39 H 0.09 2.59 6.22 -2.39 -0.01 2.58 16 40 H 0.37 19.56 7.80 -92.71 -0.72 18.84 16 41 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -75.86 360.58 2.39 -73.46 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.36 Total: 28.24 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 7.83 Total: 14.95 kcal Atomic # 7 Polarization: -136.97 SS G_CDS: -6.96 Total: -143.93 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.06 Total: -23.65 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Atomic # 17 Polarization: 1.13 SS G_CDS: -0.08 Total: 1.05 kcal Total: -75.86 2.39 -73.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134989470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.223 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds