Wall clock time and date at job start Tue Mar 31 2020 10:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47119 * 2 1 4 4 C 1.36929 * 120.00012 * 84.36846 * 3 2 1 5 5 H 1.07997 * 120.00194 * 32.50840 * 4 3 2 6 6 C 1.38817 * 120.00061 * 212.78105 * 4 3 2 7 7 N 1.31614 * 119.99748 * 10.74541 * 6 4 3 8 8 Si 1.86795 * 120.00045 * 190.74629 * 6 4 3 9 9 H 1.48506 * 109.47308 * 60.00000 * 8 6 4 10 10 H 1.48500 * 109.47090 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47379 * 300.00037 * 8 6 4 12 12 C 1.46503 * 119.99768 * 264.37341 * 3 2 1 13 13 H 1.08999 * 109.47101 * 183.65223 * 12 3 2 14 14 C 1.53002 * 109.47521 * 63.64839 * 12 3 2 15 15 C 1.53002 * 109.46842 * 303.64735 * 12 3 2 16 16 N 1.46500 * 109.47372 * 305.00339 * 15 12 3 17 17 C 1.34776 * 119.99675 * 179.97438 * 16 15 12 18 18 O 1.21691 * 120.00246 * 5.03870 * 17 16 15 19 19 C 1.46667 * 119.99589 * 185.03142 * 17 16 15 20 20 C 1.36675 * 126.84090 * 5.01521 * 19 17 16 21 21 N 1.33297 * 107.82604 * 179.97438 * 20 19 17 22 22 C 1.31018 * 109.70985 * 359.97438 * 21 20 19 23 23 Cl 1.73602 * 125.43643 * 179.97438 * 22 21 20 24 24 N 1.34601 * 109.12825 * 359.76747 * 22 21 20 25 25 C 1.46495 * 126.49330 * 180.25777 * 24 22 21 26 26 H 1.09003 * 109.46820 * 59.99819 * 1 2 3 27 27 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47022 * 300.00323 * 1 2 3 29 29 H 1.09004 * 109.47232 * 240.00188 * 2 1 3 30 30 H 1.08997 * 109.47134 * 119.99860 * 2 1 3 31 31 H 0.97002 * 120.00147 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47083 * 179.97438 * 14 12 3 33 33 H 1.08999 * 109.46767 * 300.00073 * 14 12 3 34 34 H 1.09001 * 109.46437 * 59.99906 * 14 12 3 35 35 H 1.08997 * 109.46947 * 65.00620 * 15 12 3 36 36 H 1.09003 * 109.46956 * 184.99994 * 15 12 3 37 37 H 0.96999 * 120.00015 * 0.02562 * 16 15 12 38 38 H 1.08000 * 126.08812 * 359.95565 * 20 19 17 39 39 H 1.08997 * 109.47138 * 274.30580 * 25 24 22 40 40 H 1.09005 * 109.46826 * 34.30878 * 25 24 22 41 41 H 1.09003 * 109.46884 * 154.30505 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1369 2.0655 1.1801 5 1 2.3910 1.5376 2.0873 6 6 1.9247 3.4371 1.2115 7 7 1.4073 4.0470 0.1663 8 14 2.3737 4.4169 2.7372 9 1 3.8266 4.2723 3.0086 10 1 2.0508 5.8497 2.5180 11 1 1.6002 3.9076 3.8980 12 6 2.3798 2.0304 -1.2627 13 1 2.7795 3.0238 -1.0591 14 6 1.1376 2.1519 -2.1476 15 6 3.4385 1.1923 -1.9821 16 7 4.5795 0.9754 -1.0891 17 6 5.6393 0.2582 -1.5120 18 8 5.6899 -0.1314 -2.6637 19 6 6.7317 -0.0526 -0.5840 20 6 6.7767 0.2292 0.7526 21 7 7.9395 -0.2192 1.2253 22 6 8.6282 -0.7690 0.2557 23 17 10.2019 -1.4836 0.4185 24 7 7.9188 -0.6953 -0.8858 25 6 8.3279 -1.1978 -2.1997 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.2587 5.0053 0.1883 32 1 1.4065 2.6352 -3.0868 33 1 0.7380 1.1585 -2.3512 34 1 0.3834 2.7490 -1.6350 35 1 3.0103 0.2306 -2.2646 36 1 3.7720 1.7182 -2.8767 37 1 4.5718 1.3475 -0.1934 38 1 6.0072 0.7270 1.3241 39 1 8.9291 -0.4428 -2.7063 40 1 8.9162 -2.1067 -2.0740 41 1 7.4425 -1.4176 -2.7963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154309081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:34 Heat of formation + Delta-G solvation = 40.979365 kcal Electronic energy + Delta-G solvation = -24748.201871 eV Core-core repulsion = 21112.116098 eV Total energy + Delta-G solvation = -3636.085774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.31533 -39.06635 -37.21688 -36.92844 -34.54373 -33.69278 -31.89694 -31.17307 -29.65736 -28.33804 -27.29123 -25.62965 -24.00209 -22.76566 -21.68565 -21.44456 -19.91098 -19.28036 -17.96772 -17.01287 -16.37980 -16.25204 -15.74404 -14.87428 -14.78727 -14.63291 -14.10263 -14.03966 -13.63583 -13.37270 -13.32265 -12.90685 -12.75307 -12.44274 -12.05137 -11.90059 -11.82522 -11.62473 -11.45367 -11.28201 -11.02559 -10.82605 -10.56289 -10.41445 -10.31612 -9.97137 -9.95344 -9.71198 -9.60659 -9.55195 -8.79145 -8.56098 -8.43731 -6.71188 -5.88544 -3.39318 1.02824 1.16550 2.55782 2.61080 3.33496 3.39741 3.41714 3.44647 3.60413 4.41264 4.55616 4.63179 4.99194 5.01472 5.27517 5.29536 5.34811 5.38975 5.78988 5.88932 6.06337 6.11468 6.27380 6.32560 6.41141 6.47603 6.53606 6.56588 6.67389 6.68817 6.76617 6.92320 6.97731 7.25372 7.50547 7.55146 7.61084 7.75334 7.94586 8.40546 8.47625 9.15161 9.74858 10.30480 11.17884 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.003999 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.335751 B = 6999.580683 C = 8008.442672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.066 0.934 6 C 0.012 3.988 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.282 1.282 10 H -0.292 1.292 11 H -0.283 1.283 12 C 0.177 3.823 13 H 0.107 0.893 14 C -0.142 4.142 15 C 0.102 3.898 16 N -0.683 5.683 17 C 0.586 3.414 18 O -0.561 6.561 19 C -0.059 4.059 20 C 0.051 3.949 21 N -0.468 5.468 22 C 0.252 3.748 23 Cl 0.035 6.965 24 N -0.415 5.415 25 C 0.060 3.940 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.255 0.745 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.414 0.586 38 H 0.195 0.805 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 -8.566 -3.918 14.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.306 5.306 4 C -0.391 4.391 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.539 5.539 8 Si 0.729 3.271 9 H -0.208 1.208 10 H -0.218 1.218 11 H -0.210 1.210 12 C 0.070 3.930 13 H 0.125 0.875 14 C -0.201 4.201 15 C -0.022 4.022 16 N -0.333 5.333 17 C 0.371 3.629 18 O -0.442 6.442 19 C -0.176 4.176 20 C -0.103 4.103 21 N -0.189 5.189 22 C -0.034 4.034 23 Cl 0.063 6.937 24 N -0.099 5.099 25 C -0.081 4.081 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.212 0.788 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.789 -8.734 -4.094 15.232 hybrid contribution 0.021 0.572 0.400 0.698 sum 11.809 -8.162 -3.694 14.823 Atomic orbital electron populations 1.22391 0.99802 0.98341 1.02095 1.20807 0.91937 0.87629 0.98057 1.43970 1.73904 1.09830 1.02880 1.19118 1.41913 0.90200 0.87850 0.91640 1.25175 0.98406 0.98173 0.97054 1.69915 1.45343 1.09345 1.29329 0.86430 0.78521 0.79127 0.82994 1.20778 1.21751 1.20957 1.20557 0.90806 0.96699 0.84954 0.87516 1.22118 1.00537 0.99464 0.97992 1.22253 0.86514 1.00805 0.92677 1.45638 1.16685 1.51527 1.19429 1.16668 0.81232 0.79220 0.85768 1.90733 1.79934 1.55109 1.18473 1.21002 0.90446 1.09231 0.96959 1.22861 0.95485 1.01130 0.90822 1.70062 1.05401 1.14780 1.28667 1.23167 0.91355 1.05206 0.83668 1.98413 1.17296 1.80774 1.97266 1.45006 1.13446 1.41967 1.09494 1.22426 1.04194 1.00244 0.81273 0.93166 0.95402 0.92886 0.94572 0.94496 0.93475 0.95215 0.95275 0.89985 0.92607 0.92333 0.74812 0.78838 0.89828 0.89522 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.02 37.16 0.37 -2.75 16 2 C 0.14 2.73 5.74 -4.04 -0.02 2.71 16 3 N -0.58 -12.40 1.83 -165.65 -0.30 -12.71 16 4 C -0.26 -6.18 9.51 -15.06 -0.14 -6.32 16 5 H 0.07 1.55 7.85 -52.49 -0.41 1.14 16 6 C 0.01 0.28 5.02 -17.43 -0.09 0.20 16 7 N -0.90 -22.83 9.91 55.49 0.55 -22.28 16 8 Si 0.90 19.94 29.57 -169.99 -5.03 14.91 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.18 3.59 1.92 -67.93 -0.13 3.46 16 13 H 0.11 2.48 5.96 -51.93 -0.31 2.17 16 14 C -0.14 -2.80 8.23 37.16 0.31 -2.49 16 15 C 0.10 1.84 4.86 -4.04 -0.02 1.82 16 16 N -0.68 -11.63 5.37 -61.62 -0.33 -11.96 16 17 C 0.59 9.85 7.78 -12.86 -0.10 9.75 16 18 O -0.56 -10.38 14.79 5.20 0.08 -10.30 16 19 C -0.06 -0.91 6.91 -82.10 -0.57 -1.48 16 20 C 0.05 0.77 11.36 -17.48 -0.20 0.57 16 21 N -0.47 -7.27 11.21 -11.49 -0.13 -7.40 16 22 C 0.25 3.46 8.48 -90.34 -0.77 2.69 16 23 Cl 0.03 0.37 28.83 -51.86 -1.50 -1.13 16 24 N -0.41 -5.62 3.18 -118.36 -0.38 -6.00 16 25 C 0.06 0.62 10.62 59.84 0.64 1.25 16 26 H 0.05 0.96 6.02 -51.93 -0.31 0.65 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.66 6.35 -51.93 -0.33 0.33 16 30 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.53 6.49 -51.93 -0.34 0.20 16 34 H 0.08 1.86 7.12 -51.93 -0.37 1.49 16 35 H 0.06 1.01 6.75 -51.93 -0.35 0.66 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.41 7.12 7.07 -40.82 -0.29 6.83 16 38 H 0.19 2.63 7.50 -52.49 -0.39 2.24 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.67 7.92 -51.93 -0.41 0.26 16 41 H 0.12 1.36 6.19 -51.93 -0.32 1.04 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -27.02 348.78 -8.00 -35.02 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.50 Total: 7.18 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.72 Total: 9.41 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.59 Total: -60.35 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.50 Total: -1.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.02 -8.00 -35.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154309081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.003 kcal (2) G-P(sol) polarization free energy of solvation -27.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds