Wall clock time and date at job start Tue Mar 31 2020 10:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 N 1.39922 * 125.74650 * 60.02050 * 4 2 1 6 6 C 1.30411 * 108.95990 * 179.97438 * 5 4 2 7 7 C 1.41341 * 108.04642 * 0.02562 * 6 5 4 8 8 C 1.47302 * 126.43620 * 180.02562 * 7 6 5 9 9 O 1.21620 * 120.00125 * 179.97438 * 8 7 6 10 10 N 1.34778 * 119.99915 * 359.97092 * 8 7 6 11 11 C 1.46500 * 119.99695 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46976 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47263 * 179.97438 * 12 11 10 14 14 N 1.46508 * 109.47285 * 180.02562 * 13 12 11 15 15 C 1.36930 * 119.99806 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00661 * 359.97438 * 15 14 13 17 17 C 1.38822 * 119.99701 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99712 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47413 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47151 * 120.00428 * 19 17 15 22 22 H 1.48506 * 109.47093 * 239.99950 * 19 17 15 23 23 C 1.34348 * 125.75001 * 239.71556 * 4 2 1 24 24 Cl 1.73593 * 126.31734 * 0.03966 * 23 4 2 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.08000 * 125.98241 * 179.97438 * 6 5 4 33 33 H 0.96996 * 119.99865 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47247 * 299.99721 * 11 10 8 35 35 H 1.08993 * 109.47387 * 60.00414 * 11 10 8 36 36 H 1.08995 * 109.47115 * 300.00345 * 12 11 10 37 37 H 1.09004 * 109.47006 * 59.99548 * 12 11 10 38 38 H 1.08999 * 109.47257 * 299.99858 * 13 12 11 39 39 H 1.09004 * 109.47326 * 59.99931 * 13 12 11 40 40 H 0.96999 * 119.99522 * 0.02562 * 14 13 12 41 41 H 0.96992 * 119.99700 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.7559 -0.3185 -2.5193 6 6 2.3500 -1.1579 -3.3213 7 6 3.0259 -2.1150 -2.5309 8 6 3.8278 -3.2479 -3.0241 9 8 4.3620 -4.0039 -2.2352 10 7 3.9695 -3.4467 -4.3495 11 6 4.7667 -4.5738 -4.8400 12 6 4.7668 -4.5708 -6.3700 13 6 5.5997 -5.7475 -6.8823 14 7 5.6003 -5.7443 -8.3474 15 6 6.2848 -6.7114 -9.0338 16 1 6.8246 -7.4763 -8.4953 17 6 6.2849 -6.7086 -10.4220 18 7 5.6275 -5.7762 -11.0783 19 14 7.2181 -8.0283 -11.3585 20 1 7.8696 -8.9519 -10.3952 21 1 6.2731 -8.7902 -12.2138 22 1 8.2540 -7.3915 -12.2109 23 6 2.7984 -1.7843 -1.2077 24 17 3.4047 -2.6293 0.1822 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 2.3286 -1.1276 -4.4007 33 1 3.5438 -2.8436 -4.9787 34 1 5.7901 -4.4803 -4.4768 35 1 4.3367 -5.5077 -4.4782 36 1 3.7435 -4.6641 -6.7336 37 1 5.1970 -3.6368 -6.7315 38 1 6.6230 -5.6538 -6.5188 39 1 5.1699 -6.6817 -6.5208 40 1 5.1158 -5.0571 -8.8310 41 1 5.6278 -5.7741 -12.0482 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163414870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:54 Heat of formation + Delta-G solvation = 35.089509 kcal Electronic energy + Delta-G solvation = -22733.649831 eV Core-core repulsion = 19097.308654 eV Total energy + Delta-G solvation = -3636.341177 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86923 -39.23877 -37.25596 -36.23625 -35.91516 -34.27847 -32.04670 -31.14377 -30.52487 -29.21628 -27.89710 -25.47116 -23.67776 -23.24498 -22.13173 -21.16998 -20.75720 -19.91328 -18.25505 -17.10981 -16.58880 -16.12050 -15.95281 -15.42103 -15.24434 -14.91922 -14.54311 -14.19650 -13.93022 -13.77381 -13.50775 -13.24333 -13.01104 -12.86066 -12.84362 -12.39646 -12.36216 -12.35008 -11.97669 -11.61805 -11.57001 -11.14030 -10.91511 -10.90546 -10.74480 -10.58418 -10.04599 -9.89198 -9.85806 -9.67811 -9.17621 -8.86994 -8.84872 -6.90979 -5.75452 -3.03962 0.94184 0.96285 1.78551 2.03310 3.22776 3.32608 3.45145 3.50944 3.53231 3.79318 4.24368 4.27123 4.40476 4.61041 4.61883 4.71918 4.95468 4.98482 5.11379 5.13175 5.16625 5.27495 5.37175 5.52854 5.55346 5.59907 5.68529 5.89518 6.05598 6.12245 6.12639 6.23474 6.36134 6.53472 6.83015 6.87239 6.98619 7.56070 7.72872 8.28034 8.43748 9.54897 10.12450 10.47094 11.47708 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.002013 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.093591 B =13906.623016 C =14552.041055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 C -0.161 4.161 4 N -0.347 5.347 5 N -0.270 5.270 6 C 0.088 3.912 7 C -0.269 4.269 8 C 0.588 3.412 9 O -0.536 6.536 10 N -0.722 5.722 11 C 0.126 3.874 12 C -0.138 4.138 13 C 0.156 3.844 14 N -0.734 5.734 15 C -0.238 4.238 16 H 0.072 0.928 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.181 3.819 24 Cl 0.027 6.973 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.200 0.800 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 15.940 25.895 32.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.130 5.130 5 N -0.090 5.090 6 C -0.099 4.099 7 C -0.285 4.285 8 C 0.375 3.625 9 O -0.414 6.414 10 N -0.373 5.373 11 C 0.002 3.998 12 C -0.176 4.176 13 C 0.028 3.972 14 N -0.378 5.378 15 C -0.369 4.369 16 H 0.090 0.910 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.023 3.977 24 Cl 0.056 6.944 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.216 0.784 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.525 16.266 26.764 33.373 hybrid contribution 0.670 -0.939 -1.019 1.539 sum -10.855 15.327 25.745 31.868 Atomic orbital electron populations 1.22139 0.92311 1.03436 1.03980 1.21600 0.96392 0.94438 0.83106 1.22143 1.02074 0.93691 1.03982 1.48950 1.37156 1.20021 1.06853 1.77269 1.23620 1.22821 0.85272 1.24078 0.94120 0.91245 1.00438 1.19958 1.13593 1.04468 0.90441 1.17033 0.79819 0.83205 0.82482 1.90818 1.48487 1.46692 1.55355 1.45791 1.53612 1.31610 1.06281 1.21347 0.95537 0.88528 0.94360 1.21946 1.01862 1.00999 0.92796 1.20525 0.96226 0.94244 0.86221 1.42348 1.61917 1.34156 0.99394 1.19300 1.23646 1.04913 0.89079 0.91028 1.24760 1.01053 0.98983 0.96413 1.69668 1.46663 1.35201 1.06798 0.86093 0.79078 0.81006 0.79882 1.20512 1.21875 1.21880 1.22094 0.95037 0.89568 0.91034 1.98455 1.84638 1.73730 1.37623 0.90114 0.91767 0.90636 0.87650 0.90118 0.91771 0.90637 0.78376 0.76724 0.91269 0.91264 0.91266 0.91268 0.96031 0.96026 0.78304 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.45 37.16 0.35 -0.44 16 2 C 0.15 0.87 3.66 -67.93 -0.25 0.63 16 3 C -0.16 -0.79 9.44 37.16 0.35 -0.44 16 4 N -0.35 -3.17 3.25 -51.12 -0.17 -3.33 16 5 N -0.27 -2.65 12.33 30.87 0.38 -2.26 16 6 C 0.09 0.81 11.50 -16.98 -0.20 0.62 16 7 C -0.27 -3.06 6.13 -105.02 -0.64 -3.70 16 8 C 0.59 7.91 7.81 -12.57 -0.10 7.81 16 9 O -0.54 -8.92 15.64 5.26 0.08 -8.84 16 10 N -0.72 -8.51 5.55 -61.42 -0.34 -8.85 16 11 C 0.13 1.71 5.67 -4.04 -0.02 1.69 16 12 C -0.14 -2.09 5.44 -26.73 -0.15 -2.23 16 13 C 0.16 3.11 6.26 -4.04 -0.03 3.09 16 14 N -0.73 -18.71 5.60 -59.90 -0.34 -19.04 16 15 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 16 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 18 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 19 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 C 0.18 1.96 7.53 -16.44 -0.12 1.84 16 24 Cl 0.03 0.28 27.00 -51.86 -1.40 -1.12 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.11 0.52 7.23 -51.93 -0.38 0.15 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.20 1.14 7.50 -52.49 -0.39 0.75 16 33 H 0.40 3.60 7.42 -40.82 -0.30 3.29 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -34.56 365.36 -7.62 -42.19 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.00 Total: 4.47 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -1.05 Total: 1.38 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.26 Total: -61.16 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.40 Total: -1.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.56 -7.62 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163414870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.277 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds