Wall clock time and date at job start Tue Mar 31 2020 10:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.46929 * 2 1 4 4 C 1.46905 * 110.99865 * 199.52292 * 3 2 1 5 5 C 1.50702 * 109.46903 * 66.04583 * 4 3 2 6 6 H 1.07995 * 120.00507 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99702 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00110 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46799 * 60.00600 * 9 7 5 11 11 H 1.48498 * 109.47669 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47452 * 300.00826 * 9 7 5 13 13 C 1.38372 * 111.00052 * 75.57224 * 3 2 1 14 14 N 1.33111 * 120.77463 * 59.04173 * 13 3 2 15 15 C 1.31933 * 120.89437 * 180.02562 * 14 13 3 16 16 N 1.31618 * 122.61609 * 359.94381 * 15 14 13 17 17 C 1.33273 * 120.83013 * 0.03019 * 16 15 14 18 18 N 1.37338 * 133.16839 * 179.97438 * 17 16 15 19 19 H 0.96992 * 124.79654 * 0.02562 * 18 17 16 20 20 C 1.38509 * 110.41472 * 180.02562 * 18 17 16 21 21 C 1.39068 * 132.35728 * 180.02562 * 20 18 17 22 22 C 1.38044 * 120.04949 * 180.02562 * 21 20 18 23 23 F 1.35095 * 119.74818 * 179.97438 * 22 21 20 24 24 C 1.38855 * 120.50498 * 0.25617 * 22 21 20 25 25 C 1.37783 * 120.21701 * 359.46336 * 24 22 21 26 26 C 1.39317 * 119.83895 * 0.53228 * 25 24 22 27 27 C 1.39966 * 120.76983 * 239.02025 * 13 3 2 28 28 H 1.08996 * 109.47245 * 304.87364 * 1 2 3 29 29 H 1.09003 * 109.47322 * 64.87926 * 1 2 3 30 30 H 1.09006 * 109.47220 * 184.87428 * 1 2 3 31 31 H 1.08997 * 109.47161 * 240.00063 * 2 1 3 32 32 H 1.08997 * 109.47324 * 120.00000 * 2 1 3 33 33 H 1.09000 * 109.46917 * 186.04349 * 4 3 2 34 34 H 1.08996 * 109.47318 * 306.04758 * 4 3 2 35 35 H 0.97007 * 120.00390 * 179.97438 * 8 7 5 36 36 H 1.08002 * 118.68810 * 179.97438 * 15 14 13 37 37 H 1.08001 * 119.97743 * 359.97438 * 21 20 18 38 38 H 1.08008 * 119.89196 * 179.69665 * 24 22 21 39 39 H 1.07999 * 120.07807 * 180.29877 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4137 1.4505 -0.4583 5 6 3.4855 1.0448 -1.9079 6 1 2.5855 0.7666 -2.4361 7 6 4.7001 1.0298 -2.5602 8 7 5.7961 1.3691 -1.9173 9 14 4.7893 0.5263 -4.3569 10 1 3.9562 1.4475 -5.1710 11 1 6.1986 0.5926 -4.8203 12 1 4.2839 -0.8619 -4.5077 13 6 1.8814 1.9598 1.2511 14 7 2.4763 1.4258 2.3154 15 6 2.3457 1.9716 3.5094 16 7 1.6334 3.0584 3.7186 17 6 1.0013 3.6647 2.7141 18 7 0.2075 4.7831 2.6419 19 1 -0.0260 5.3457 3.3967 20 6 -0.2125 4.9942 1.3391 21 6 -1.0141 5.9720 0.7598 22 6 -1.2754 5.9382 -0.5952 23 9 -2.0552 6.8908 -1.1515 24 6 -0.7475 4.9293 -1.3899 25 6 0.0534 3.9559 -0.8337 26 6 0.3247 3.9786 0.5326 27 6 1.1132 3.1165 1.4267 28 1 -0.3633 0.5876 0.8431 29 1 -0.3634 0.4363 -0.9305 30 1 -0.3634 -1.0240 0.0873 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7852 2.4692 -0.3473 34 1 4.0248 0.7738 0.1390 35 1 6.6507 1.3582 -2.3761 36 1 2.8436 1.5085 4.3485 37 1 -1.4332 6.7579 1.3707 38 1 -0.9623 4.9097 -2.4482 39 1 0.4668 3.1749 -1.4547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:10 Heat of formation + Delta-G solvation = 61.703078 kcal Electronic energy + Delta-G solvation = -25841.601899 eV Core-core repulsion = 22085.387317 eV Total energy + Delta-G solvation = -3756.214582 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.94263 -41.92852 -39.42729 -37.35702 -36.06263 -32.95755 -32.23227 -31.98949 -30.14600 -29.64015 -28.74916 -26.65984 -24.31743 -23.57777 -22.63702 -22.51004 -21.46785 -20.51458 -18.60815 -18.09741 -16.76080 -16.50604 -16.30512 -15.88213 -15.79873 -15.43829 -15.17940 -14.83299 -14.71815 -14.20102 -14.02553 -13.79640 -13.18809 -13.09911 -13.02871 -12.70952 -12.46800 -12.23710 -11.59330 -11.42017 -11.23163 -11.09112 -10.88863 -10.72163 -10.61826 -10.39868 -10.22094 -9.81624 -9.74790 -9.43766 -9.02816 -8.54555 -8.14706 -7.98422 -7.76044 -6.10211 -4.13462 0.62004 0.98701 1.72421 1.77206 2.39656 3.29678 3.34638 3.36194 3.64526 4.06466 4.10930 4.22401 4.35233 4.41041 4.56882 4.61427 4.74806 4.97488 5.16346 5.23578 5.26301 5.32951 5.57748 5.68677 5.84621 5.92912 5.96296 6.06173 6.15553 6.25477 6.34018 6.48239 6.56313 6.62958 6.69976 6.91700 6.94357 7.12546 7.26648 7.44025 7.67929 7.82689 8.00896 8.37214 8.39687 8.91978 9.50615 11.00442 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.005145 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.266859 B = 5440.822257 C = 6945.109270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 N -0.492 5.492 4 C 0.205 3.795 5 C -0.514 4.514 6 H 0.067 0.933 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.430 3.570 14 N -0.565 5.565 15 C 0.338 3.662 16 N -0.557 5.557 17 C 0.368 3.632 18 N -0.591 5.591 19 H 0.422 0.578 20 C 0.156 3.844 21 C -0.180 4.180 22 C 0.130 3.870 23 F -0.138 7.138 24 C -0.180 4.180 25 C -0.010 4.010 26 C -0.073 4.073 27 C -0.181 4.181 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.028 0.972 34 H 0.012 0.988 35 H 0.264 0.736 36 H 0.198 0.802 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.227 5.565 7.000 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.217 5.217 4 C 0.082 3.918 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.191 3.809 14 N -0.285 5.285 15 C 0.047 3.953 16 N -0.279 5.279 17 C 0.127 3.873 18 N -0.205 5.205 19 H 0.260 0.740 20 C 0.052 3.948 21 C -0.202 4.202 22 C 0.110 3.890 23 F -0.117 7.117 24 C -0.200 4.200 25 C -0.028 4.028 26 C -0.078 4.078 27 C -0.192 4.192 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.214 0.786 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.890 5.518 7.457 15.881 hybrid contribution 0.125 0.323 -0.575 0.671 sum -12.765 5.841 6.882 15.634 Atomic orbital electron populations 1.21792 0.96313 1.00453 1.01622 1.22095 0.94141 0.87834 1.02833 1.60360 1.26926 1.19164 1.15201 1.19797 0.78644 0.97533 0.95854 1.21016 0.93573 1.45824 0.94818 0.91481 1.24967 0.95503 0.95303 0.98490 1.69956 0.98579 1.47844 1.36855 0.86529 0.76994 0.79148 0.84566 1.20062 1.21353 1.20137 1.20033 0.83915 0.87272 0.89656 1.68864 1.24131 1.35295 1.00247 1.24536 0.90085 0.86472 0.94174 1.67474 1.14002 1.12712 1.33762 1.18292 0.91068 0.87701 0.90189 1.41128 1.46175 1.24913 1.08294 0.73991 1.17686 0.97584 0.96375 0.83117 1.19663 1.05302 1.01391 0.93847 1.17152 0.93311 0.87981 0.90579 1.91493 1.72278 1.62399 1.85499 1.21005 1.02329 0.95791 1.00869 1.20760 0.92492 0.96926 0.92658 1.18438 1.00678 0.95213 0.93484 1.19781 1.05842 0.99827 0.93765 0.94226 0.92036 0.92874 0.88429 0.93913 0.95394 0.97030 0.92678 0.78550 0.84682 0.84118 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.07 37.15 0.37 -1.84 16 2 C 0.06 1.08 5.49 -3.83 -0.02 1.06 16 3 N -0.49 -10.19 4.43 -174.30 -0.77 -10.96 16 4 C 0.20 5.15 4.55 -4.97 -0.02 5.13 16 5 C -0.51 -13.51 8.23 -34.44 -0.28 -13.80 16 6 H 0.07 1.70 7.31 -52.49 -0.38 1.31 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 C 0.43 8.43 4.58 -154.71 -0.71 7.72 16 14 N -0.57 -10.67 9.62 -13.74 -0.13 -10.80 16 15 C 0.34 5.33 12.24 -92.19 -1.13 4.20 16 16 N -0.56 -8.84 10.47 -13.85 -0.15 -8.98 16 17 C 0.37 5.92 8.42 -155.40 -1.31 4.61 16 18 N -0.59 -7.59 6.09 -9.82 -0.06 -7.65 16 19 H 0.42 3.97 8.96 -40.82 -0.37 3.60 16 20 C 0.16 2.12 7.21 -83.74 -0.60 1.52 16 21 C -0.18 -2.10 10.03 -39.34 -0.39 -2.49 16 22 C 0.13 1.61 7.28 -39.42 -0.29 1.32 16 23 F -0.14 -1.68 17.26 2.25 0.04 -1.65 16 24 C -0.18 -2.30 10.01 -39.52 -0.40 -2.69 16 25 C -0.01 -0.15 10.08 -39.35 -0.40 -0.55 16 26 C -0.07 -1.17 6.35 -105.09 -0.67 -1.83 16 27 C -0.18 -3.25 6.35 -104.85 -0.67 -3.91 16 28 H 0.04 0.63 7.59 -51.93 -0.39 0.23 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.93 6.58 -51.93 -0.34 1.59 16 32 H 0.04 0.82 7.45 -51.93 -0.39 0.43 16 33 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.01 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 39 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -30.09 339.25 -11.23 -41.32 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.38 Total: 3.05 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -6.61 Total: -0.05 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.37 Total: -63.49 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.09 -11.23 -41.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.022 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds