Wall clock time and date at job start Tue Mar 31 2020 10:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.46929 * 2 1 4 4 C 1.46905 * 110.99865 * 199.52292 * 3 2 1 5 5 C 1.50702 * 109.46903 * 66.04583 * 4 3 2 6 6 H 1.07995 * 120.00507 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99702 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00110 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46799 * 60.00600 * 9 7 5 11 11 H 1.48498 * 109.47669 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47452 * 300.00826 * 9 7 5 13 13 C 1.38372 * 111.00052 * 75.57224 * 3 2 1 14 14 N 1.33111 * 120.77463 * 59.04173 * 13 3 2 15 15 C 1.31933 * 120.89437 * 180.02562 * 14 13 3 16 16 N 1.31618 * 122.61609 * 359.94381 * 15 14 13 17 17 C 1.33273 * 120.83013 * 0.03019 * 16 15 14 18 18 N 1.37338 * 133.16839 * 179.97438 * 17 16 15 19 19 H 0.96992 * 124.79654 * 0.02562 * 18 17 16 20 20 C 1.38509 * 110.41472 * 180.02562 * 18 17 16 21 21 C 1.39068 * 132.35728 * 180.02562 * 20 18 17 22 22 C 1.38044 * 120.04949 * 180.02562 * 21 20 18 23 23 F 1.35095 * 119.74818 * 179.97438 * 22 21 20 24 24 C 1.38855 * 120.50498 * 0.25617 * 22 21 20 25 25 C 1.37783 * 120.21701 * 359.46336 * 24 22 21 26 26 C 1.39317 * 119.83895 * 0.53228 * 25 24 22 27 27 C 1.39966 * 120.76983 * 239.02025 * 13 3 2 28 28 H 1.08996 * 109.47245 * 304.87364 * 1 2 3 29 29 H 1.09003 * 109.47322 * 64.87926 * 1 2 3 30 30 H 1.09006 * 109.47220 * 184.87428 * 1 2 3 31 31 H 1.08997 * 109.47161 * 240.00063 * 2 1 3 32 32 H 1.08997 * 109.47324 * 120.00000 * 2 1 3 33 33 H 1.09000 * 109.46917 * 186.04349 * 4 3 2 34 34 H 1.08996 * 109.47318 * 306.04758 * 4 3 2 35 35 H 0.97007 * 120.00390 * 179.97438 * 8 7 5 36 36 H 1.08002 * 118.68810 * 179.97438 * 15 14 13 37 37 H 1.08001 * 119.97743 * 359.97438 * 21 20 18 38 38 H 1.08008 * 119.89196 * 179.69665 * 24 22 21 39 39 H 1.07999 * 120.07807 * 180.29877 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4137 1.4505 -0.4583 5 6 3.4855 1.0448 -1.9079 6 1 2.5855 0.7666 -2.4361 7 6 4.7001 1.0298 -2.5602 8 7 5.7961 1.3691 -1.9173 9 14 4.7893 0.5263 -4.3569 10 1 3.9562 1.4475 -5.1710 11 1 6.1986 0.5926 -4.8203 12 1 4.2839 -0.8619 -4.5077 13 6 1.8814 1.9598 1.2511 14 7 2.4763 1.4258 2.3154 15 6 2.3457 1.9716 3.5094 16 7 1.6334 3.0584 3.7186 17 6 1.0013 3.6647 2.7141 18 7 0.2075 4.7831 2.6419 19 1 -0.0260 5.3457 3.3967 20 6 -0.2125 4.9942 1.3391 21 6 -1.0141 5.9720 0.7598 22 6 -1.2754 5.9382 -0.5952 23 9 -2.0552 6.8908 -1.1515 24 6 -0.7475 4.9293 -1.3899 25 6 0.0534 3.9559 -0.8337 26 6 0.3247 3.9786 0.5326 27 6 1.1132 3.1165 1.4267 28 1 -0.3633 0.5876 0.8431 29 1 -0.3634 0.4363 -0.9305 30 1 -0.3634 -1.0240 0.0873 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7852 2.4692 -0.3473 34 1 4.0248 0.7738 0.1390 35 1 6.6507 1.3582 -2.3761 36 1 2.8436 1.5085 4.3485 37 1 -1.4332 6.7579 1.3707 38 1 -0.9623 4.9097 -2.4482 39 1 0.4668 3.1749 -1.4547 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:10 Heat of formation + Delta-G solvation = 45.378240 kcal Electronic energy + Delta-G solvation = -25842.309797 eV Core-core repulsion = 22085.387317 eV Total energy + Delta-G solvation = -3756.922480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.92452 -43.14648 -40.68798 -38.81187 -37.25155 -34.90286 -33.67089 -33.15503 -31.68351 -30.75648 -30.06260 -28.43964 -25.61380 -24.94340 -24.37163 -23.68268 -22.73204 -21.91807 -19.82637 -19.24425 -18.52519 -17.85086 -17.67907 -17.13604 -16.99656 -16.68915 -16.35087 -16.21694 -16.12322 -15.64461 -15.52448 -14.88927 -14.65255 -14.39731 -14.22926 -14.11677 -14.06125 -13.79812 -12.90214 -12.87589 -12.81397 -12.61803 -12.37338 -12.30889 -12.03701 -11.96202 -11.87182 -11.46405 -11.11664 -10.96375 -10.62170 -10.42723 -9.48769 -9.23825 -9.13514 -8.20030 -6.31181 -0.60163 -0.21789 0.53313 0.60529 1.28178 1.45553 1.48567 1.56170 2.39773 2.54198 2.71469 2.78312 3.13944 3.14950 3.17389 3.39803 3.48372 3.58203 3.82766 4.01454 4.12212 4.26360 4.31066 4.38530 4.47201 4.68212 4.82942 4.89501 4.97337 5.00680 5.02991 5.10602 5.18997 5.20119 5.36473 5.39248 5.43306 5.65959 5.73387 5.85119 5.99928 6.04063 6.35838 6.55251 6.82233 7.08796 7.38300 8.91618 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.011183 B = 0.005145 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.266859 B = 5440.822257 C = 6945.109270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.058 3.942 3 N -0.487 5.487 4 C 0.229 3.771 5 C -0.520 4.520 6 H 0.076 0.924 7 C 0.005 3.995 8 N -0.935 5.935 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.401 3.599 14 N -0.593 5.593 15 C 0.334 3.666 16 N -0.551 5.551 17 C 0.365 3.635 18 N -0.572 5.572 19 H 0.440 0.560 20 C 0.159 3.841 21 C -0.161 4.161 22 C 0.132 3.868 23 F -0.132 7.132 24 C -0.171 4.171 25 C -0.026 4.026 26 C -0.102 4.102 27 C -0.200 4.200 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.033 0.967 33 H -0.011 1.011 34 H -0.025 1.025 35 H 0.264 0.736 36 H 0.235 0.765 37 H 0.171 0.829 38 H 0.160 0.840 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.540 6.756 6.810 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 N -0.210 5.210 4 C 0.105 3.895 5 C -0.559 4.559 6 H 0.094 0.906 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.189 1.189 13 C 0.163 3.837 14 N -0.314 5.314 15 C 0.044 3.956 16 N -0.273 5.273 17 C 0.123 3.877 18 N -0.188 5.188 19 H 0.282 0.718 20 C 0.055 3.945 21 C -0.183 4.183 22 C 0.112 3.888 23 F -0.111 7.111 24 C -0.191 4.191 25 C -0.045 4.045 26 C -0.107 4.107 27 C -0.211 4.211 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.007 0.993 34 H -0.007 1.007 35 H 0.073 0.927 36 H 0.251 0.749 37 H 0.189 0.811 38 H 0.178 0.822 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.253 6.730 7.293 18.197 hybrid contribution 0.768 0.050 -0.447 0.890 sum -14.484 6.779 6.846 17.396 Atomic orbital electron populations 1.21656 0.93309 1.02013 1.01589 1.22114 0.96493 0.86689 1.01531 1.60228 1.23749 1.20212 1.16852 1.19256 0.80918 0.94031 0.95331 1.21332 0.93982 1.45227 0.95309 0.90603 1.25922 0.95010 0.95129 1.03297 1.70111 0.99223 1.49282 1.38914 0.85398 0.76966 0.79353 0.78701 1.18912 1.21387 1.18869 1.20057 0.85780 0.88527 0.89341 1.68790 1.24991 1.36376 1.01194 1.25254 0.89829 0.86402 0.94101 1.67595 1.13804 1.12569 1.33310 1.18485 0.91230 0.88422 0.89584 1.41003 1.45006 1.23952 1.08811 0.71761 1.17760 0.97664 0.96164 0.82921 1.19940 1.03512 1.01017 0.93823 1.17170 0.93021 0.87738 0.90847 1.91517 1.72039 1.62075 1.85467 1.21159 1.01031 0.94950 1.01923 1.20636 0.93855 0.97627 0.92342 1.18619 1.01684 0.96160 0.94257 1.19989 1.06096 0.99497 0.95469 0.94762 0.91563 0.90299 0.89941 0.94886 0.99256 1.00720 0.92694 0.74941 0.81129 0.82247 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 10.07 71.98 0.72 -3.19 16 2 C 0.06 2.26 5.49 86.30 0.47 2.74 16 3 N -0.49 -21.26 4.43 -705.35 -3.12 -24.38 16 4 C 0.23 12.32 4.55 85.56 0.39 12.71 16 5 C -0.52 -28.38 8.23 25.60 0.21 -28.17 16 6 H 0.08 3.91 7.31 -2.91 -0.02 3.89 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.94 -56.11 13.29 21.45 0.28 -55.82 16 9 Si 0.97 42.92 29.54 68.60 2.03 44.94 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 13 C 0.40 16.42 4.58 133.27 0.61 17.03 16 14 N -0.59 -23.29 9.62 -197.38 -1.90 -25.19 16 15 C 0.33 10.53 12.24 180.90 2.21 12.74 16 16 N -0.55 -17.05 10.47 -197.74 -2.07 -19.12 16 17 C 0.37 11.49 8.42 133.66 1.12 12.62 16 18 N -0.57 -13.49 6.09 -184.97 -1.13 -14.62 16 19 H 0.44 6.97 8.96 -92.71 -0.83 6.14 16 20 C 0.16 3.98 7.21 38.81 0.28 4.26 16 21 C -0.16 -3.20 10.03 22.42 0.22 -2.97 16 22 C 0.13 2.88 7.28 22.37 0.16 3.04 16 23 F -0.13 -2.77 17.26 44.97 0.78 -2.00 16 24 C -0.17 -4.07 10.01 22.31 0.22 -3.85 16 25 C -0.03 -0.78 10.08 22.42 0.23 -0.55 16 26 C -0.10 -3.25 6.35 -20.17 -0.13 -3.38 16 27 C -0.20 -7.28 6.35 -20.01 -0.13 -7.40 16 28 H 0.03 1.07 7.59 -2.39 -0.02 1.06 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.08 3.40 6.58 -2.39 -0.02 3.39 16 32 H 0.03 1.32 7.45 -2.39 -0.02 1.30 16 33 H -0.01 -0.65 8.05 -2.39 -0.02 -0.66 16 34 H -0.03 -1.50 8.12 -2.39 -0.02 -1.52 16 35 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 36 H 0.23 5.22 8.06 -2.91 -0.02 5.19 16 37 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -68.13 339.25 2.22 -65.91 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.28 Total: 13.90 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 7.07 Total: 16.36 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -7.93 Total: -139.12 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -68.13 2.22 -65.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.293 kcal (2) G-P(sol) polarization free energy of solvation -68.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds