Wall clock time and date at job start Tue Mar 31 2020 11:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86799 * 120.00340 * 2 1 4 4 H 1.48503 * 109.47459 * 240.00181 * 3 2 1 5 5 H 1.48502 * 109.47145 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47044 * 120.00126 * 3 2 1 7 7 C 1.40068 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99885 * 163.66849 * 7 2 1 9 9 C 1.40892 * 119.99736 * 343.65890 * 7 2 1 10 10 C 1.40263 * 120.70276 * 335.00146 * 9 7 2 11 11 C 1.40237 * 118.13703 * 179.97438 * 10 9 7 12 12 C 1.40843 * 120.56576 * 180.02562 * 11 10 9 13 13 C 1.36133 * 119.70915 * 179.97438 * 12 11 10 14 14 C 1.39305 * 120.76838 * 0.02562 * 13 12 11 15 15 C 1.36282 * 121.06542 * 359.72567 * 14 13 12 16 16 C 1.40424 * 119.97305 * 0.52761 * 15 14 13 17 17 N 1.34030 * 120.13124 * 179.75648 * 16 15 14 18 18 C 1.31366 * 121.97182 * 179.71842 * 17 16 15 19 19 N 1.38087 * 119.76165 * 179.97438 * 18 17 16 20 20 C 1.46502 * 120.00390 * 0.02562 * 19 18 17 21 21 C 1.52997 * 109.46945 * 180.02562 * 20 19 18 22 22 H 1.08997 * 109.52817 * 59.87237 * 21 20 19 23 23 C 1.53146 * 109.52017 * 180.02562 * 21 20 19 24 24 O 1.43080 * 109.15142 * 175.21266 * 23 21 20 25 25 C 1.43081 * 113.59151 * 302.05074 * 24 23 21 26 26 C 1.53143 * 109.15292 * 57.94688 * 25 24 23 27 27 O 1.43074 * 109.15152 * 304.68979 * 26 25 24 28 28 H 0.97009 * 119.99698 * 359.97438 * 1 2 3 29 29 H 1.07992 * 120.93378 * 0.02562 * 10 9 7 30 30 H 1.08003 * 120.14953 * 359.96155 * 12 11 10 31 31 H 1.07998 * 119.61672 * 179.97438 * 13 12 11 32 32 H 1.08000 * 119.46197 * 179.97438 * 14 13 12 33 33 H 1.08010 * 120.01105 * 180.02562 * 15 14 13 34 34 H 0.97000 * 119.99594 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.46715 * 300.00290 * 20 19 18 36 36 H 1.08992 * 109.46894 * 60.00030 * 20 19 18 37 37 H 1.08997 * 109.52780 * 295.11479 * 23 21 20 38 38 H 1.09005 * 109.52581 * 55.24810 * 23 21 20 39 39 H 1.09003 * 109.52429 * 177.85572 * 25 24 23 40 40 H 1.09006 * 109.51964 * 298.04634 * 25 24 23 41 41 H 1.09003 * 109.51983 * 64.59483 * 26 25 24 42 42 H 1.08996 * 109.52204 * 184.78524 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6964 -1.2125 5 1 1.2770 2.7465 0.0006 6 1 3.0957 1.6963 1.2125 7 6 2.0082 -1.2131 -0.0005 8 1 3.0554 -1.2319 -0.2635 9 6 1.3462 -2.4087 0.3422 10 6 0.2066 -2.3873 1.1596 11 6 -0.4101 -3.6089 1.4665 12 6 -1.5576 -3.6468 2.2822 13 6 -2.1425 -4.8423 2.5686 14 6 -1.6190 -6.0307 2.0645 15 6 -0.5131 -6.0301 1.2681 16 6 0.1237 -4.8189 0.9529 17 7 1.2144 -4.8150 0.1740 18 6 1.8353 -3.7030 -0.1480 19 7 2.9559 -3.7522 -0.9534 20 6 3.4480 -5.0411 -1.4461 21 6 4.6916 -4.8162 -2.3085 22 1 5.4661 -4.3339 -1.7123 23 6 5.2067 -6.1629 -2.8247 24 8 6.3003 -5.9357 -3.7189 25 6 5.9653 -5.1029 -4.8331 26 6 5.4501 -3.7562 -4.3169 27 8 4.3566 -3.9836 -3.4227 28 1 -0.4850 0.8401 0.0004 29 1 -0.1856 -1.4563 1.5411 30 1 -1.9716 -2.7316 2.6790 31 1 -3.0221 -4.8697 3.1947 32 1 -2.0998 -6.9673 2.3055 33 1 -0.1219 -6.9616 0.8862 34 1 3.4172 -2.9332 -1.1930 35 1 3.7033 -5.6797 -0.6005 36 1 2.6732 -5.5215 -2.0434 37 1 5.5433 -6.7705 -1.9847 38 1 4.4058 -6.6816 -3.3516 39 1 6.8513 -4.9427 -5.4476 40 1 5.1902 -5.5855 -5.4286 41 1 6.2508 -3.2381 -3.7891 42 1 5.1136 -3.1488 -5.1570 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168265356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:04 Heat of formation + Delta-G solvation = -43.994526 kcal Electronic energy + Delta-G solvation = -25654.772344 eV Core-core repulsion = 21985.141924 eV Total energy + Delta-G solvation = -3669.630420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.04283 -39.06923 -36.82246 -36.04313 -34.56409 -33.77014 -31.70810 -31.45734 -29.40266 -28.74373 -27.85590 -25.63093 -25.35747 -23.26657 -21.79545 -21.51318 -21.08198 -20.40917 -18.13833 -17.08371 -16.98601 -16.47902 -16.32502 -15.97642 -15.54017 -15.21334 -15.17108 -14.73281 -14.04416 -13.73633 -13.56105 -13.40647 -13.11719 -12.94448 -12.66632 -12.39876 -12.34531 -11.91634 -11.76357 -11.56813 -11.44751 -11.30580 -10.95457 -10.86073 -10.76438 -10.66825 -10.42672 -10.34183 -9.85914 -9.46983 -9.26292 -8.81050 -8.69897 -8.16569 -7.20030 -6.91823 -6.54635 -4.38941 1.87079 2.28404 2.92747 2.97723 3.00025 3.51839 3.54713 3.57233 3.78764 3.98752 4.07414 4.55605 4.77662 4.84617 4.85489 4.94227 5.00177 5.15730 5.35713 5.44616 5.58723 5.65094 5.67315 5.71737 5.84222 5.91340 5.98583 6.11632 6.24489 6.35960 6.49700 6.57999 6.78771 6.85793 6.96014 7.00683 7.12525 7.32206 7.48317 7.51816 7.69337 7.84897 7.93462 8.14270 8.31967 8.47480 8.59910 8.75246 9.52217 10.01068 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009559 B = 0.004831 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.474329 B = 5794.068850 C = 8498.835469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.439 4.439 8 H 0.078 0.922 9 C 0.046 3.954 10 C -0.188 4.188 11 C -0.066 4.066 12 C -0.120 4.120 13 C -0.141 4.141 14 C -0.166 4.166 15 C -0.089 4.089 16 C 0.085 3.915 17 N -0.562 5.562 18 C 0.387 3.613 19 N -0.713 5.713 20 C 0.152 3.848 21 C 0.042 3.958 22 H 0.073 0.927 23 C 0.034 3.966 24 O -0.380 6.380 25 C 0.023 3.977 26 C 0.024 3.976 27 O -0.365 6.365 28 H 0.285 0.715 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.410 0.590 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 -4.988 -5.295 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.468 4.468 8 H 0.096 0.904 9 C 0.039 3.961 10 C -0.214 4.214 11 C -0.069 4.069 12 C -0.139 4.139 13 C -0.160 4.160 14 C -0.186 4.186 15 C -0.109 4.109 16 C -0.032 4.032 17 N -0.283 5.283 18 C 0.133 3.867 19 N -0.351 5.351 20 C 0.026 3.974 21 C -0.016 4.016 22 H 0.091 0.909 23 C -0.043 4.043 24 O -0.299 6.299 25 C -0.054 4.054 26 C -0.054 4.054 27 O -0.284 6.284 28 H 0.096 0.904 29 H 0.148 0.852 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.074 -5.837 -5.596 11.427 hybrid contribution 0.120 1.922 0.055 1.926 sum 8.194 -3.916 -5.541 10.638 Atomic orbital electron populations 1.69789 1.07623 1.29711 1.32847 1.25896 0.94806 1.01334 0.92625 0.86302 0.80132 0.79984 0.80049 1.18882 1.20135 1.18692 1.19252 0.97105 0.90865 1.39605 0.90353 1.18932 0.94426 0.89998 0.92711 1.21228 1.00681 0.95544 1.03911 1.18646 0.95859 0.94274 0.98141 1.20834 0.96209 0.96941 0.99929 1.20433 1.00271 0.93021 1.02260 1.20299 0.98693 0.97052 1.02533 1.20394 0.95742 0.95987 0.98755 1.18035 0.93576 0.92304 0.99290 1.66982 1.11911 1.28428 1.20972 1.20106 0.87348 0.89900 0.89341 1.43828 1.29395 1.07675 1.54159 1.20961 0.93081 0.87686 0.95657 1.23103 0.98503 0.91755 0.88263 0.90944 1.23177 0.90418 0.96378 0.94350 1.88080 1.35586 1.69522 1.36714 1.23269 1.01667 0.91429 0.89042 1.23231 0.90849 0.96704 0.94578 1.88234 1.34667 1.69326 1.36168 0.90413 0.85187 0.87541 0.88122 0.87982 0.87452 0.75256 0.90897 0.91698 0.87429 0.91659 0.87982 0.92106 0.92200 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.16 10.94 55.55 0.61 -18.55 16 2 C 0.07 1.72 5.19 -17.31 -0.09 1.63 16 3 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.44 -10.67 8.59 -37.89 -0.33 -11.00 16 8 H 0.08 1.76 6.77 -52.49 -0.36 1.40 16 9 C 0.05 1.17 5.73 -104.67 -0.60 0.57 16 10 C -0.19 -4.88 8.52 -38.07 -0.32 -5.21 16 11 C -0.07 -1.63 5.74 -106.77 -0.61 -2.24 16 12 C -0.12 -2.63 9.75 -39.35 -0.38 -3.01 16 13 C -0.14 -2.75 9.96 -39.94 -0.40 -3.15 16 14 C -0.17 -3.19 9.95 -39.89 -0.40 -3.59 16 15 C -0.09 -1.89 9.94 -39.46 -0.39 -2.28 16 16 C 0.09 2.08 6.60 -84.69 -0.56 1.52 16 17 N -0.56 -13.51 9.45 -8.56 -0.08 -13.59 16 18 C 0.39 9.18 7.67 -153.66 -1.18 8.00 16 19 N -0.71 -14.04 5.52 -58.62 -0.32 -14.36 16 20 C 0.15 2.43 5.37 -4.04 -0.02 2.41 16 21 C 0.04 0.56 2.93 -26.66 -0.08 0.48 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 23 C 0.03 0.39 6.34 37.23 0.24 0.62 16 24 O -0.38 -4.51 10.85 -48.80 -0.53 -5.04 16 25 C 0.02 0.22 7.05 37.23 0.26 0.48 16 26 C 0.02 0.25 7.05 37.23 0.26 0.51 16 27 O -0.37 -5.27 10.25 -48.80 -0.50 -5.77 16 28 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 29 H 0.13 3.46 6.24 -52.49 -0.33 3.13 16 30 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.11 2.08 8.06 -52.48 -0.42 1.65 16 34 H 0.41 7.86 6.69 -40.82 -0.27 7.58 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -29.08 347.80 -10.80 -39.88 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.59 Total: 13.96 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -4.60 Total: -14.25 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.20 Total: -46.50 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -1.03 Total: -10.81 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.08 -10.80 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168265356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.117 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds