Wall clock time and date at job start Tue Mar 31 2020 11:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35608 * 117.00032 * 2 1 4 4 C 1.38512 * 120.07938 * 359.97438 * 3 2 1 5 5 C 1.38034 * 120.30501 * 179.72663 * 4 3 2 6 6 C 1.39958 * 120.46840 * 0.02562 * 5 4 3 7 7 C 1.48325 * 119.92031 * 180.02562 * 6 5 4 8 8 C 1.39309 * 120.15163 * 129.72048 * 7 6 5 9 9 C 1.38000 * 119.92941 * 179.74352 * 8 7 6 10 10 C 1.38390 * 120.23952 * 0.53573 * 9 8 7 11 11 C 1.50701 * 119.84909 * 179.76237 * 10 9 8 12 12 O 1.42902 * 109.47048 * 269.97776 * 11 10 9 13 13 C 1.38193 * 120.30110 * 359.74266 * 10 9 8 14 14 C 1.38563 * 120.06971 * 359.97438 * 13 10 9 15 15 O 1.35846 * 120.12236 * 180.02562 * 14 13 10 16 16 C 1.42899 * 116.99957 * 0.02562 * 15 14 13 17 17 C 1.38628 * 120.15907 * 359.97438 * 6 5 4 18 18 C 1.40529 * 119.68566 * 0.04171 * 17 6 5 19 19 C 1.41175 * 120.22828 * 180.02562 * 18 17 6 20 20 H 1.08000 * 119.99952 * 154.48494 * 19 18 17 21 21 C 1.39901 * 120.00091 * 334.48480 * 19 18 17 22 22 N 1.30886 * 119.99872 * 343.08923 * 21 19 18 23 23 Si 1.86802 * 120.00219 * 163.09092 * 21 19 18 24 24 H 1.48501 * 109.47059 * 59.99824 * 23 21 19 25 25 H 1.48497 * 109.47043 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46897 * 300.00027 * 23 21 19 27 27 H 1.09001 * 109.46904 * 60.00174 * 1 2 3 28 28 H 1.09003 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47022 * 300.00156 * 1 2 3 30 30 H 1.07999 * 119.85050 * 359.75255 * 4 3 2 31 31 H 1.08003 * 119.75931 * 179.97438 * 5 4 3 32 32 H 1.08002 * 120.02948 * 0.02562 * 8 7 6 33 33 H 1.08006 * 119.88316 * 180.25148 * 9 8 7 34 34 H 1.08997 * 109.46900 * 29.97854 * 11 10 9 35 35 H 1.08998 * 109.47025 * 149.97475 * 11 10 9 36 36 H 0.96703 * 113.99712 * 179.97438 * 12 11 10 37 37 H 1.08007 * 119.96426 * 180.02562 * 13 10 9 38 38 H 1.08999 * 109.47160 * 299.99933 * 16 15 14 39 39 H 1.08997 * 109.46793 * 60.00027 * 16 15 14 40 40 H 1.09006 * 109.47065 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.15709 * 180.02562 * 17 6 5 42 42 H 0.97001 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9137 3.6033 0.0051 6 6 3.3104 3.6935 0.0110 7 6 3.9659 5.0240 0.0176 8 6 4.9619 5.3087 0.9490 9 6 5.5724 6.5463 0.9477 10 6 5.1911 7.5106 0.0311 11 6 5.8600 8.8610 0.0410 12 8 5.1421 9.7418 0.9076 13 6 4.2001 7.2406 -0.8934 14 6 3.5827 6.0002 -0.9072 15 8 2.6088 5.7334 -1.8159 16 6 2.2703 6.7786 -2.7297 17 6 4.0826 2.5422 0.0116 18 6 3.4565 1.2842 0.0055 19 6 4.2318 0.1043 0.0066 20 1 3.8209 -0.8114 0.4053 21 6 5.5323 0.1214 -0.5087 22 7 5.9178 1.1063 -1.2797 23 14 6.7186 -1.2614 -0.0964 24 1 6.1602 -2.5517 -0.5745 25 1 8.0222 -1.0099 -0.7615 26 1 6.9161 -1.3221 1.3741 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2135 2.3132 -0.0050 31 1 1.3182 4.5043 0.0043 32 1 5.2592 4.5600 1.6684 33 1 6.3474 6.7649 1.6675 34 1 6.8848 8.7562 0.3972 35 1 5.8665 9.2706 -0.9691 36 1 5.5175 10.6312 0.9631 37 1 3.9071 7.9970 -1.6065 38 1 1.9216 7.6487 -2.1735 39 1 3.1498 7.0493 -3.3139 40 1 1.4810 6.4350 -3.3984 41 1 5.1604 2.6118 0.0165 42 1 6.8197 1.1184 -1.6367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204789037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:40 Heat of formation + Delta-G solvation = -78.976205 kcal Electronic energy + Delta-G solvation = -25684.458364 eV Core-core repulsion = 21981.018273 eV Total energy + Delta-G solvation = -3703.440090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.91743 -38.51259 -37.60293 -36.52873 -35.74185 -33.66930 -31.80659 -29.95026 -29.61651 -28.42441 -27.30144 -26.56298 -25.30187 -24.67773 -21.94546 -21.46700 -20.76768 -19.77606 -17.60368 -17.51926 -17.07068 -16.48934 -15.90551 -15.58073 -15.34777 -15.00165 -14.61132 -14.48788 -14.36053 -14.32241 -13.62337 -13.24123 -12.99953 -12.76596 -12.65597 -12.41708 -12.08726 -11.70361 -11.60992 -11.44181 -11.27897 -11.13770 -11.04115 -10.75621 -10.72426 -10.52289 -10.40804 -10.15859 -9.85453 -9.76647 -9.39981 -9.10315 -8.45840 -7.81425 -7.41115 -6.76876 -6.55350 -4.17012 1.52163 1.84529 2.83921 2.97305 3.13509 3.17240 3.26616 3.68269 4.01671 4.03094 4.51345 4.55132 4.69712 4.96078 5.04144 5.19512 5.25954 5.33297 5.36154 5.48603 5.61566 5.66103 5.70109 5.80357 5.86928 5.89558 6.02382 6.07794 6.21674 6.32687 6.43258 6.63324 6.76223 6.90336 6.96446 7.15329 7.19784 7.38523 7.41197 7.50682 7.71774 7.76702 7.88258 8.08202 8.25639 8.44717 8.75775 8.92442 9.12516 10.30941 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012458 B = 0.004379 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.048665 B = 6393.160628 C = 7863.799507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.020 3.980 4 C -0.183 4.183 5 C -0.169 4.169 6 C -0.067 4.067 7 C -0.025 4.025 8 C -0.081 4.081 9 C -0.134 4.134 10 C -0.079 4.079 11 C 0.122 3.878 12 O -0.567 6.567 13 C -0.190 4.190 14 C 0.126 3.874 15 O -0.296 6.296 16 C 0.027 3.973 17 C -0.121 4.121 18 C 0.094 3.906 19 C -0.449 4.449 20 H 0.081 0.919 21 C 0.074 3.926 22 N -0.800 5.800 23 Si 0.907 3.093 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.264 1.264 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.375 0.625 37 H 0.122 0.878 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 12.256 -0.066 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.025 4.025 4 C -0.202 4.202 5 C -0.188 4.188 6 C -0.068 4.068 7 C -0.025 4.025 8 C -0.099 4.099 9 C -0.153 4.153 10 C -0.079 4.079 11 C 0.045 3.955 12 O -0.372 6.372 13 C -0.209 4.209 14 C 0.081 3.919 15 O -0.209 6.209 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.091 3.909 19 C -0.479 4.479 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.426 5.426 23 Si 0.732 3.268 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.189 1.189 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.221 0.779 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.146 0.854 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.141 11.425 -0.180 11.483 hybrid contribution 0.669 0.405 -0.271 0.828 sum -0.472 11.830 -0.451 11.848 Atomic orbital electron populations 1.22731 0.81814 1.01655 0.99937 1.85956 1.18168 1.28378 1.90103 1.19341 0.92400 0.82548 1.08172 1.20526 0.97350 0.92740 1.09557 1.20070 0.92809 0.95196 1.10765 1.18218 0.92812 0.90214 1.05512 1.18504 0.96643 0.93292 0.94102 1.21120 0.94734 0.96351 0.97689 1.20781 1.01578 0.93654 0.99245 1.19196 0.97683 0.94274 0.96788 1.20950 0.93800 0.87755 0.93034 1.86617 1.56730 1.25408 1.68470 1.20883 1.00532 0.96411 1.03082 1.19008 0.89699 0.92848 0.90376 1.86269 1.51885 1.39449 1.43272 1.22993 1.00648 0.90931 0.92316 1.21165 0.99300 0.89438 1.04158 1.16928 0.87241 0.93852 0.92880 1.19332 0.96874 0.96588 1.35105 0.90089 1.25852 0.98753 0.96840 0.92804 1.69842 1.19115 1.30811 1.22840 0.86384 0.78976 0.81641 0.79804 1.19096 1.20511 1.18911 0.94154 0.90097 0.94239 0.88548 0.89006 0.85052 0.86336 0.92825 0.93217 0.77873 0.86052 0.93243 0.93188 0.88627 0.85443 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.81 101.05 0.99 1.60 16 2 O -0.31 -7.39 9.77 -18.52 -0.18 -7.57 16 3 C 0.02 0.51 6.72 -38.29 -0.26 0.25 16 4 C -0.18 -4.25 9.01 -39.55 -0.36 -4.61 16 5 C -0.17 -3.94 8.77 -39.01 -0.34 -4.28 16 6 C -0.07 -1.61 5.27 -104.96 -0.55 -2.17 16 7 C -0.02 -0.52 5.47 -104.76 -0.57 -1.10 16 8 C -0.08 -1.52 9.50 -39.27 -0.37 -1.89 16 9 C -0.13 -2.17 9.68 -39.61 -0.38 -2.55 16 10 C -0.08 -1.22 5.51 -104.58 -0.58 -1.80 16 11 C 0.12 1.40 7.16 36.01 0.26 1.66 16 12 O -0.57 -6.60 13.64 -35.23 -0.48 -7.08 16 13 C -0.19 -3.09 8.68 -39.48 -0.34 -3.44 16 14 C 0.13 2.42 6.59 -38.87 -0.26 2.16 16 15 O -0.30 -5.57 8.82 -19.26 -0.17 -5.74 16 16 C 0.03 0.35 9.81 101.05 0.99 1.34 16 17 C -0.12 -3.17 8.12 -38.57 -0.31 -3.48 16 18 C 0.09 2.56 5.57 -106.72 -0.59 1.97 16 19 C -0.45 -12.33 8.71 -37.85 -0.33 -12.66 16 20 H 0.08 2.21 7.65 -52.49 -0.40 1.81 16 21 C 0.07 1.90 5.15 -17.33 -0.09 1.81 16 22 N -0.80 -21.13 10.97 55.55 0.61 -20.52 16 23 Si 0.91 19.27 29.59 -169.99 -5.03 14.24 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 27 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 30 H 0.10 1.96 6.27 -52.49 -0.33 1.63 16 31 H 0.09 2.01 7.66 -52.48 -0.40 1.61 16 32 H 0.13 2.38 8.04 -52.49 -0.42 1.96 16 33 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.37 2.27 9.12 45.56 0.42 2.69 16 37 H 0.12 1.65 6.30 -52.48 -0.33 1.32 16 38 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 39 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.13 3.43 6.17 -52.49 -0.32 3.10 16 42 H 0.28 6.76 8.30 -40.82 -0.34 6.43 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -32.47 354.29 -7.64 -40.11 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.63 Total: 8.40 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -3.10 Total: -27.18 kcal Atomic # 7 Polarization: -21.13 SS G_CDS: 0.61 Total: -20.52 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.83 Total: -20.39 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.47 -7.64 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204789037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.866 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds