Wall clock time and date at job start Tue Mar 31 2020 11:08:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35608 * 117.00032 * 2 1
4 4 C 1.38512 * 120.07938 * 359.97438 * 3 2 1
5 5 C 1.38034 * 120.30501 * 179.72663 * 4 3 2
6 6 C 1.39958 * 120.46840 * 0.02562 * 5 4 3
7 7 C 1.48325 * 119.92031 * 180.02562 * 6 5 4
8 8 C 1.39309 * 120.15163 * 129.72048 * 7 6 5
9 9 C 1.38000 * 119.92941 * 179.74352 * 8 7 6
10 10 C 1.38390 * 120.23952 * 0.53573 * 9 8 7
11 11 C 1.50701 * 119.84909 * 179.76237 * 10 9 8
12 12 O 1.42902 * 109.47048 * 269.97776 * 11 10 9
13 13 C 1.38193 * 120.30110 * 359.74266 * 10 9 8
14 14 C 1.38563 * 120.06971 * 359.97438 * 13 10 9
15 15 O 1.35846 * 120.12236 * 180.02562 * 14 13 10
16 16 C 1.42899 * 116.99957 * 0.02562 * 15 14 13
17 17 C 1.38628 * 120.15907 * 359.97438 * 6 5 4
18 18 C 1.40529 * 119.68566 * 0.04171 * 17 6 5
19 19 C 1.41175 * 120.22828 * 180.02562 * 18 17 6
20 20 H 1.08000 * 119.99952 * 154.48494 * 19 18 17
21 21 C 1.39901 * 120.00091 * 334.48480 * 19 18 17
22 22 N 1.30886 * 119.99872 * 343.08923 * 21 19 18
23 23 Si 1.86802 * 120.00219 * 163.09092 * 21 19 18
24 24 H 1.48501 * 109.47059 * 59.99824 * 23 21 19
25 25 H 1.48497 * 109.47043 * 179.97438 * 23 21 19
26 26 H 1.48495 * 109.46897 * 300.00027 * 23 21 19
27 27 H 1.09001 * 109.46904 * 60.00174 * 1 2 3
28 28 H 1.09003 * 109.46954 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.47022 * 300.00156 * 1 2 3
30 30 H 1.07999 * 119.85050 * 359.75255 * 4 3 2
31 31 H 1.08003 * 119.75931 * 179.97438 * 5 4 3
32 32 H 1.08002 * 120.02948 * 0.02562 * 8 7 6
33 33 H 1.08006 * 119.88316 * 180.25148 * 9 8 7
34 34 H 1.08997 * 109.46900 * 29.97854 * 11 10 9
35 35 H 1.08998 * 109.47025 * 149.97475 * 11 10 9
36 36 H 0.96703 * 113.99712 * 179.97438 * 12 11 10
37 37 H 1.08007 * 119.96426 * 180.02562 * 13 10 9
38 38 H 1.08999 * 109.47160 * 299.99933 * 16 15 14
39 39 H 1.08997 * 109.46793 * 60.00027 * 16 15 14
40 40 H 1.09006 * 109.47065 * 180.02562 * 16 15 14
41 41 H 1.08000 * 120.15709 * 180.02562 * 17 6 5
42 42 H 0.97001 * 120.00086 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0447 1.2083 0.0000
4 6 1.2919 2.3710 -0.0005
5 6 1.9137 3.6033 0.0051
6 6 3.3104 3.6935 0.0110
7 6 3.9659 5.0240 0.0176
8 6 4.9619 5.3087 0.9490
9 6 5.5724 6.5463 0.9477
10 6 5.1911 7.5106 0.0311
11 6 5.8600 8.8610 0.0410
12 8 5.1421 9.7418 0.9076
13 6 4.2001 7.2406 -0.8934
14 6 3.5827 6.0002 -0.9072
15 8 2.6088 5.7334 -1.8159
16 6 2.2703 6.7786 -2.7297
17 6 4.0826 2.5422 0.0116
18 6 3.4565 1.2842 0.0055
19 6 4.2318 0.1043 0.0066
20 1 3.8209 -0.8114 0.4053
21 6 5.5323 0.1214 -0.5087
22 7 5.9178 1.1063 -1.2797
23 14 6.7186 -1.2614 -0.0964
24 1 6.1602 -2.5517 -0.5745
25 1 8.0222 -1.0099 -0.7615
26 1 6.9161 -1.3221 1.3741
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8899
30 1 0.2135 2.3132 -0.0050
31 1 1.3182 4.5043 0.0043
32 1 5.2592 4.5600 1.6684
33 1 6.3474 6.7649 1.6675
34 1 6.8848 8.7562 0.3972
35 1 5.8665 9.2706 -0.9691
36 1 5.5175 10.6312 0.9631
37 1 3.9071 7.9970 -1.6065
38 1 1.9216 7.6487 -2.1735
39 1 3.1498 7.0493 -3.3139
40 1 1.4810 6.4350 -3.3984
41 1 5.1604 2.6118 0.0165
42 1 6.8197 1.1184 -1.6367
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001204789037.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:08:40
Heat of formation + Delta-G solvation = -78.976205 kcal
Electronic energy + Delta-G solvation = -25684.458364 eV
Core-core repulsion = 21981.018273 eV
Total energy + Delta-G solvation = -3703.440090 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.135 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-39.91743 -38.51259 -37.60293 -36.52873 -35.74185 -33.66930 -31.80659 -29.95026
-29.61651 -28.42441 -27.30144 -26.56298 -25.30187 -24.67773 -21.94546 -21.46700
-20.76768 -19.77606 -17.60368 -17.51926 -17.07068 -16.48934 -15.90551 -15.58073
-15.34777 -15.00165 -14.61132 -14.48788 -14.36053 -14.32241 -13.62337 -13.24123
-12.99953 -12.76596 -12.65597 -12.41708 -12.08726 -11.70361 -11.60992 -11.44181
-11.27897 -11.13770 -11.04115 -10.75621 -10.72426 -10.52289 -10.40804 -10.15859
-9.85453 -9.76647 -9.39981 -9.10315 -8.45840 -7.81425 -7.41115 -6.76876
-6.55350 -4.17012 1.52163 1.84529 2.83921 2.97305 3.13509 3.17240
3.26616 3.68269 4.01671 4.03094 4.51345 4.55132 4.69712 4.96078
5.04144 5.19512 5.25954 5.33297 5.36154 5.48603 5.61566 5.66103
5.70109 5.80357 5.86928 5.89558 6.02382 6.07794 6.21674 6.32687
6.43258 6.63324 6.76223 6.90336 6.96446 7.15329 7.19784 7.38523
7.41197 7.50682 7.71774 7.76702 7.88258 8.08202 8.25639 8.44717
8.75775 8.92442 9.12516 10.30941
Molecular weight = 314.14amu
Principal moments of inertia in cm(-1)
A = 0.012458 B = 0.004379 C = 0.003560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2247.048665 B = 6393.160628 C = 7863.799507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.312 6.312
3 C 0.020 3.980
4 C -0.183 4.183
5 C -0.169 4.169
6 C -0.067 4.067
7 C -0.025 4.025
8 C -0.081 4.081
9 C -0.134 4.134
10 C -0.079 4.079
11 C 0.122 3.878
12 O -0.567 6.567
13 C -0.190 4.190
14 C 0.126 3.874
15 O -0.296 6.296
16 C 0.027 3.973
17 C -0.121 4.121
18 C 0.094 3.906
19 C -0.449 4.449
20 H 0.081 0.919
21 C 0.074 3.926
22 N -0.800 5.800
23 Si 0.907 3.093
24 H -0.266 1.266
25 H -0.280 1.280
26 H -0.264 1.264
27 H 0.040 0.960
28 H 0.081 0.919
29 H 0.039 0.961
30 H 0.096 0.904
31 H 0.092 0.908
32 H 0.132 0.868
33 H 0.119 0.881
34 H 0.054 0.946
35 H 0.050 0.950
36 H 0.375 0.625
37 H 0.122 0.878
38 H 0.049 0.951
39 H 0.050 0.950
40 H 0.095 0.905
41 H 0.128 0.872
42 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.950 12.256 -0.066 12.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.226 6.226
3 C -0.025 4.025
4 C -0.202 4.202
5 C -0.188 4.188
6 C -0.068 4.068
7 C -0.025 4.025
8 C -0.099 4.099
9 C -0.153 4.153
10 C -0.079 4.079
11 C 0.045 3.955
12 O -0.372 6.372
13 C -0.209 4.209
14 C 0.081 3.919
15 O -0.209 6.209
16 C -0.069 4.069
17 C -0.141 4.141
18 C 0.091 3.909
19 C -0.479 4.479
20 H 0.099 0.901
21 C -0.142 4.142
22 N -0.426 5.426
23 Si 0.732 3.268
24 H -0.191 1.191
25 H -0.205 1.205
26 H -0.189 1.189
27 H 0.058 0.942
28 H 0.099 0.901
29 H 0.058 0.942
30 H 0.115 0.885
31 H 0.110 0.890
32 H 0.149 0.851
33 H 0.137 0.863
34 H 0.072 0.928
35 H 0.068 0.932
36 H 0.221 0.779
37 H 0.139 0.861
38 H 0.068 0.932
39 H 0.068 0.932
40 H 0.114 0.886
41 H 0.146 0.854
42 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -1.141 11.425 -0.180 11.483
hybrid contribution 0.669 0.405 -0.271 0.828
sum -0.472 11.830 -0.451 11.848
Atomic orbital electron populations
1.22731 0.81814 1.01655 0.99937 1.85956 1.18168 1.28378 1.90103
1.19341 0.92400 0.82548 1.08172 1.20526 0.97350 0.92740 1.09557
1.20070 0.92809 0.95196 1.10765 1.18218 0.92812 0.90214 1.05512
1.18504 0.96643 0.93292 0.94102 1.21120 0.94734 0.96351 0.97689
1.20781 1.01578 0.93654 0.99245 1.19196 0.97683 0.94274 0.96788
1.20950 0.93800 0.87755 0.93034 1.86617 1.56730 1.25408 1.68470
1.20883 1.00532 0.96411 1.03082 1.19008 0.89699 0.92848 0.90376
1.86269 1.51885 1.39449 1.43272 1.22993 1.00648 0.90931 0.92316
1.21165 0.99300 0.89438 1.04158 1.16928 0.87241 0.93852 0.92880
1.19332 0.96874 0.96588 1.35105 0.90089 1.25852 0.98753 0.96840
0.92804 1.69842 1.19115 1.30811 1.22840 0.86384 0.78976 0.81641
0.79804 1.19096 1.20511 1.18911 0.94154 0.90097 0.94239 0.88548
0.89006 0.85052 0.86336 0.92825 0.93217 0.77873 0.86052 0.93243
0.93188 0.88627 0.85443 0.91003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.61 9.81 101.05 0.99 1.60 16
2 O -0.31 -7.39 9.77 -18.52 -0.18 -7.57 16
3 C 0.02 0.51 6.72 -38.29 -0.26 0.25 16
4 C -0.18 -4.25 9.01 -39.55 -0.36 -4.61 16
5 C -0.17 -3.94 8.77 -39.01 -0.34 -4.28 16
6 C -0.07 -1.61 5.27 -104.96 -0.55 -2.17 16
7 C -0.02 -0.52 5.47 -104.76 -0.57 -1.10 16
8 C -0.08 -1.52 9.50 -39.27 -0.37 -1.89 16
9 C -0.13 -2.17 9.68 -39.61 -0.38 -2.55 16
10 C -0.08 -1.22 5.51 -104.58 -0.58 -1.80 16
11 C 0.12 1.40 7.16 36.01 0.26 1.66 16
12 O -0.57 -6.60 13.64 -35.23 -0.48 -7.08 16
13 C -0.19 -3.09 8.68 -39.48 -0.34 -3.44 16
14 C 0.13 2.42 6.59 -38.87 -0.26 2.16 16
15 O -0.30 -5.57 8.82 -19.26 -0.17 -5.74 16
16 C 0.03 0.35 9.81 101.05 0.99 1.34 16
17 C -0.12 -3.17 8.12 -38.57 -0.31 -3.48 16
18 C 0.09 2.56 5.57 -106.72 -0.59 1.97 16
19 C -0.45 -12.33 8.71 -37.85 -0.33 -12.66 16
20 H 0.08 2.21 7.65 -52.49 -0.40 1.81 16
21 C 0.07 1.90 5.15 -17.33 -0.09 1.81 16
22 N -0.80 -21.13 10.97 55.55 0.61 -20.52 16
23 Si 0.91 19.27 29.59 -169.99 -5.03 14.24 16
24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16
26 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16
27 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16
28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16
29 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16
30 H 0.10 1.96 6.27 -52.49 -0.33 1.63 16
31 H 0.09 2.01 7.66 -52.48 -0.40 1.61 16
32 H 0.13 2.38 8.04 -52.49 -0.42 1.96 16
33 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16
34 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16
35 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16
36 H 0.37 2.27 9.12 45.56 0.42 2.69 16
37 H 0.12 1.65 6.30 -52.48 -0.33 1.32 16
38 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16
39 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16
40 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16
41 H 0.13 3.43 6.17 -52.49 -0.32 3.10 16
42 H 0.28 6.76 8.30 -40.82 -0.34 6.43 16
LS Contribution 354.29 15.07 5.34 5.34
Total: -1.00 -32.47 354.29 -7.64 -40.11
By element:
Atomic # 1 Polarization: 13.03 SS G_CDS: -4.63 Total: 8.40 kcal
Atomic # 6 Polarization: -24.08 SS G_CDS: -3.10 Total: -27.18 kcal
Atomic # 7 Polarization: -21.13 SS G_CDS: 0.61 Total: -20.52 kcal
Atomic # 8 Polarization: -19.56 SS G_CDS: -0.83 Total: -20.39 kcal
Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -32.47 -7.64 -40.11 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001204789037.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.866 kcal
(2) G-P(sol) polarization free energy of solvation -32.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.336 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.976 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds