Wall clock time and date at job start Tue Mar 31 2020 11:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47320 * 2 1 4 4 C 1.34225 * 116.99975 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00291 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99785 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47110 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46953 * 54.61356 * 7 6 4 9 9 C 1.50701 * 109.47239 * 174.60919 * 7 6 4 10 10 H 1.08001 * 119.99785 * 94.06284 * 9 7 6 11 11 C 1.37882 * 119.99877 * 274.07054 * 9 7 6 12 12 N 1.31522 * 119.99634 * 187.13909 * 11 9 7 13 13 Si 1.86794 * 120.00041 * 7.13287 * 11 9 7 14 14 H 1.48498 * 109.46831 * 92.62745 * 13 11 9 15 15 H 1.48502 * 109.46891 * 212.62379 * 13 11 9 16 16 H 1.48496 * 109.47366 * 332.62257 * 13 11 9 17 17 O 1.42899 * 109.47593 * 294.61231 * 7 6 4 18 18 C 1.35880 * 116.99939 * 156.56416 * 17 7 6 19 19 C 1.39850 * 119.57131 * 5.65908 * 18 17 7 20 20 C 1.35979 * 120.93440 * 179.97438 * 19 18 17 21 21 C 1.40593 * 119.73170 * 0.02562 * 20 19 18 22 22 C 1.40523 * 121.22074 * 180.02562 * 21 20 19 23 23 C 1.36100 * 119.67362 * 179.97438 * 22 21 20 24 24 C 1.39376 * 120.99364 * 359.97438 * 23 22 21 25 25 C 1.36089 * 120.97830 * 0.02562 * 24 23 22 26 26 C 1.40576 * 119.66178 * 359.97438 * 25 24 23 27 27 C 1.36578 * 119.56843 * 185.38541 * 18 17 7 28 28 H 1.08999 * 109.47331 * 59.99395 * 1 2 3 29 29 H 1.08998 * 109.47348 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46535 * 299.99705 * 1 2 3 31 31 H 1.09000 * 109.47002 * 240.00544 * 2 1 3 32 32 H 1.08999 * 109.47331 * 120.00605 * 2 1 3 33 33 H 1.08994 * 109.47693 * 300.00239 * 6 4 3 34 34 H 1.09004 * 109.47182 * 60.00658 * 6 4 3 35 35 H 0.96996 * 119.99553 * 179.97438 * 12 11 9 36 36 H 1.08001 * 119.53230 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.13529 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.16193 * 359.95131 * 22 21 20 39 39 H 1.08006 * 119.50543 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.51275 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.16703 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.18119 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7804 2.2436 -0.8385 9 6 6.0244 4.2435 -0.1351 10 1 6.2965 4.8029 0.7477 11 6 6.2036 4.7976 -1.3849 12 7 6.8333 5.9454 -1.5112 13 14 5.5523 3.9181 -2.8987 14 1 4.1871 4.4128 -3.2095 15 1 6.4500 4.1855 -4.0511 16 1 5.5022 2.4569 -2.6390 17 8 5.8950 2.2726 1.2241 18 6 7.1187 1.6820 1.2159 19 6 7.9219 1.7740 0.0747 20 6 9.1512 1.1940 0.0364 21 6 9.6254 0.4904 1.1575 22 6 10.8908 -0.1205 1.1523 23 6 11.3188 -0.7933 2.2553 24 6 10.5203 -0.8865 3.3938 25 6 9.2893 -0.3076 3.4354 26 6 8.8132 0.3958 2.3153 27 6 7.5507 1.0110 2.3243 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5845 3.4693 -0.8911 34 1 3.5852 3.4698 0.8889 35 1 6.9597 6.3350 -2.3904 36 1 7.5609 2.3140 -0.7882 37 1 9.7605 1.2727 -0.8518 38 1 11.5207 -0.0567 0.2772 39 1 12.2921 -1.2615 2.2485 40 1 10.8838 -1.4259 4.2559 41 1 8.6817 -0.3876 4.3247 42 1 6.9231 0.9503 3.2011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225267023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:01 Heat of formation + Delta-G solvation = -87.285347 kcal Electronic energy + Delta-G solvation = -25753.171853 eV Core-core repulsion = 22049.371451 eV Total energy + Delta-G solvation = -3703.800402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23967 -39.89132 -38.25801 -36.28906 -35.08339 -33.33777 -32.21690 -31.85677 -31.00546 -29.35201 -28.27367 -26.62146 -23.40271 -23.05434 -22.63426 -21.56990 -21.34737 -20.06902 -17.79262 -17.62314 -17.01682 -16.74220 -16.32903 -16.21998 -15.73596 -15.10074 -14.53017 -14.33298 -14.10798 -13.75495 -13.63519 -13.22498 -13.06171 -12.91417 -12.87546 -12.66640 -12.56020 -12.44045 -12.10759 -11.77699 -11.60644 -11.46024 -11.32057 -10.98038 -10.80332 -10.67406 -10.41642 -10.34995 -10.05288 -9.98565 -9.79985 -9.57709 -9.13869 -8.90633 -7.84805 -7.09753 -6.42679 -4.48340 0.99431 1.53750 2.52598 2.68926 2.98020 3.04688 3.10882 3.14916 3.49692 4.05872 4.14185 4.61242 4.84689 4.93687 4.97767 5.00990 5.14577 5.15536 5.28855 5.30945 5.42457 5.53651 5.66511 5.69825 5.74714 5.79749 5.86432 5.91517 5.93644 5.94558 6.10538 6.18178 6.33789 6.42340 6.57007 6.65499 6.69112 6.78486 6.79979 7.00867 7.04749 7.17213 7.24507 7.41587 8.04080 8.20204 8.31734 8.72160 9.15682 10.68708 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.004826 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.336479 B = 5800.117722 C = 7729.809602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.366 6.366 4 C 0.454 3.546 5 O -0.503 6.503 6 C -0.107 4.107 7 C 0.189 3.811 8 H 0.051 0.949 9 C -0.546 4.546 10 H 0.090 0.910 11 C 0.088 3.912 12 N -0.872 5.872 13 Si 0.845 3.155 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.255 1.255 17 O -0.308 6.308 18 C 0.187 3.813 19 C -0.158 4.158 20 C -0.084 4.084 21 C -0.091 4.091 22 C -0.090 4.090 23 C -0.147 4.147 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.009 4.009 27 C -0.190 4.190 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.271 0.729 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -11.531 3.370 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.284 6.284 4 C 0.297 3.703 5 O -0.390 6.390 6 C -0.145 4.145 7 C 0.134 3.866 8 H 0.068 0.932 9 C -0.583 4.583 10 H 0.108 0.892 11 C -0.118 4.118 12 N -0.507 5.507 13 Si 0.671 3.329 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.180 1.180 17 O -0.221 6.221 18 C 0.140 3.860 19 C -0.176 4.176 20 C -0.102 4.102 21 C -0.091 4.091 22 C -0.108 4.108 23 C -0.165 4.165 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.009 4.009 27 C -0.209 4.209 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.228 -11.653 3.375 12.335 hybrid contribution -0.315 -0.307 -1.147 1.228 sum -2.543 -11.960 2.228 12.429 Atomic orbital electron populations 1.21787 0.93051 1.02539 1.03401 1.22923 0.95027 0.81321 1.02307 1.86561 1.25683 1.31514 1.84598 1.24602 0.79862 0.93941 0.71874 1.90633 1.60201 1.43252 1.44904 1.22178 0.97211 0.89120 1.06004 1.20475 0.88293 0.94790 0.83065 0.93152 1.21282 1.43101 0.98661 0.95258 0.89240 1.24895 0.93731 0.94869 0.98350 1.69877 1.38402 1.17823 1.24569 0.87364 0.80412 0.81356 0.83811 1.19026 1.20129 1.17999 1.85914 1.29971 1.68184 1.38033 1.18577 0.85030 0.89380 0.93052 1.21415 0.95292 1.01260 0.99608 1.20844 0.95655 0.96509 0.97218 1.18012 0.95139 1.01445 0.94523 1.20941 0.94786 0.96826 0.98229 1.20635 0.99968 1.01908 0.94029 1.20699 0.94701 1.00175 0.97983 1.20896 0.96427 0.98719 0.97493 1.17705 0.93254 0.96597 0.93380 1.19997 0.96974 1.05157 0.98735 0.91624 0.90639 0.91538 0.91666 0.91482 0.87225 0.86926 0.91865 0.84040 0.85778 0.86218 0.86796 0.86730 0.86120 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -6.10 10.22 -39.25 -0.40 -6.50 16 4 C 0.45 8.82 7.84 36.01 0.28 9.11 16 5 O -0.50 -10.97 15.18 -23.94 -0.36 -11.34 16 6 C -0.11 -2.14 5.26 -27.88 -0.15 -2.29 16 7 C 0.19 4.34 0.75 -27.88 -0.02 4.32 16 8 H 0.05 1.21 3.71 -51.93 -0.19 1.02 16 9 C -0.55 -14.08 8.11 -34.44 -0.28 -14.36 16 10 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 11 C 0.09 2.28 5.47 -17.81 -0.10 2.18 16 12 N -0.87 -24.27 13.96 55.43 0.77 -23.49 16 13 Si 0.85 18.95 26.01 -169.99 -4.42 14.52 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.26 -5.62 5.95 56.52 0.34 -5.29 16 17 O -0.31 -7.12 9.03 -33.36 -0.30 -7.42 16 18 C 0.19 4.10 6.53 -39.58 -0.26 3.85 16 19 C -0.16 -3.36 8.57 -39.79 -0.34 -3.70 16 20 C -0.08 -1.56 9.76 -39.50 -0.39 -1.94 16 21 C -0.09 -1.61 5.74 -106.81 -0.61 -2.22 16 22 C -0.09 -1.32 9.77 -39.49 -0.39 -1.71 16 23 C -0.15 -1.94 9.95 -39.93 -0.40 -2.34 16 24 C -0.12 -1.56 9.95 -39.93 -0.40 -1.95 16 25 C -0.12 -1.76 9.77 -39.47 -0.39 -2.15 16 26 C -0.01 -0.17 5.74 -106.85 -0.61 -0.78 16 27 C -0.19 -3.71 9.68 -39.35 -0.38 -4.10 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 33 H 0.11 2.09 6.38 -51.93 -0.33 1.76 16 34 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.14 3.21 5.56 -52.49 -0.29 2.92 16 37 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.11 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -30.04 353.12 -8.71 -38.75 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.51 Total: 8.29 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -3.81 Total: -18.14 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.77 Total: -23.49 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.07 Total: -25.25 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.42 Total: 14.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.04 -8.71 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.537 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds