Wall clock time and date at job start Tue Mar 31 2020 11:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47320 * 2 1 4 4 C 1.34225 * 116.99975 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00291 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99785 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47110 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46953 * 54.61356 * 7 6 4 9 9 C 1.50701 * 109.47239 * 174.60919 * 7 6 4 10 10 H 1.08001 * 119.99785 * 94.06284 * 9 7 6 11 11 C 1.37882 * 119.99877 * 274.07054 * 9 7 6 12 12 N 1.31522 * 119.99634 * 187.13909 * 11 9 7 13 13 Si 1.86794 * 120.00041 * 7.13287 * 11 9 7 14 14 H 1.48498 * 109.46831 * 92.62745 * 13 11 9 15 15 H 1.48502 * 109.46891 * 212.62379 * 13 11 9 16 16 H 1.48496 * 109.47366 * 332.62257 * 13 11 9 17 17 O 1.42899 * 109.47593 * 294.61231 * 7 6 4 18 18 C 1.35880 * 116.99939 * 156.56416 * 17 7 6 19 19 C 1.39850 * 119.57131 * 5.65908 * 18 17 7 20 20 C 1.35979 * 120.93440 * 179.97438 * 19 18 17 21 21 C 1.40593 * 119.73170 * 0.02562 * 20 19 18 22 22 C 1.40523 * 121.22074 * 180.02562 * 21 20 19 23 23 C 1.36100 * 119.67362 * 179.97438 * 22 21 20 24 24 C 1.39376 * 120.99364 * 359.97438 * 23 22 21 25 25 C 1.36089 * 120.97830 * 0.02562 * 24 23 22 26 26 C 1.40576 * 119.66178 * 359.97438 * 25 24 23 27 27 C 1.36578 * 119.56843 * 185.38541 * 18 17 7 28 28 H 1.08999 * 109.47331 * 59.99395 * 1 2 3 29 29 H 1.08998 * 109.47348 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46535 * 299.99705 * 1 2 3 31 31 H 1.09000 * 109.47002 * 240.00544 * 2 1 3 32 32 H 1.08999 * 109.47331 * 120.00605 * 2 1 3 33 33 H 1.08994 * 109.47693 * 300.00239 * 6 4 3 34 34 H 1.09004 * 109.47182 * 60.00658 * 6 4 3 35 35 H 0.96996 * 119.99553 * 179.97438 * 12 11 9 36 36 H 1.08001 * 119.53230 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.13529 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.16193 * 359.95131 * 22 21 20 39 39 H 1.08006 * 119.50543 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.51275 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.16703 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.18119 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7804 2.2436 -0.8385 9 6 6.0244 4.2435 -0.1351 10 1 6.2965 4.8029 0.7477 11 6 6.2036 4.7976 -1.3849 12 7 6.8333 5.9454 -1.5112 13 14 5.5523 3.9181 -2.8987 14 1 4.1871 4.4128 -3.2095 15 1 6.4500 4.1855 -4.0511 16 1 5.5022 2.4569 -2.6390 17 8 5.8950 2.2726 1.2241 18 6 7.1187 1.6820 1.2159 19 6 7.9219 1.7740 0.0747 20 6 9.1512 1.1940 0.0364 21 6 9.6254 0.4904 1.1575 22 6 10.8908 -0.1205 1.1523 23 6 11.3188 -0.7933 2.2553 24 6 10.5203 -0.8865 3.3938 25 6 9.2893 -0.3076 3.4354 26 6 8.8132 0.3958 2.3153 27 6 7.5507 1.0110 2.3243 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5845 3.4693 -0.8911 34 1 3.5852 3.4698 0.8889 35 1 6.9597 6.3350 -2.3904 36 1 7.5609 2.3140 -0.7882 37 1 9.7605 1.2727 -0.8518 38 1 11.5207 -0.0567 0.2772 39 1 12.2921 -1.2615 2.2485 40 1 10.8838 -1.4259 4.2559 41 1 8.6817 -0.3876 4.3247 42 1 6.9231 0.9503 3.2011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225267023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:01 Heat of formation + Delta-G solvation = -102.591134 kcal Electronic energy + Delta-G solvation = -25753.835561 eV Core-core repulsion = 22049.371451 eV Total energy + Delta-G solvation = -3704.464111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73889 -41.28332 -39.75287 -37.71107 -36.50663 -35.19637 -33.66362 -33.16789 -32.35269 -30.69099 -29.63386 -28.42300 -24.82969 -24.40113 -23.88304 -22.94370 -22.72000 -21.60103 -19.60717 -19.24088 -18.57741 -18.10695 -17.66898 -17.65703 -17.13024 -16.58500 -16.23344 -15.61668 -15.39277 -15.28939 -15.09525 -14.78533 -14.47505 -14.41069 -14.16167 -13.96127 -13.87272 -13.70048 -13.49181 -13.28150 -12.93506 -12.83530 -12.64669 -12.51230 -12.22783 -12.03778 -11.90269 -11.81331 -11.55796 -11.54673 -11.39925 -11.19071 -10.90673 -10.61566 -9.22421 -8.51777 -8.45880 -6.56318 -0.31342 0.20549 1.14575 1.18803 1.21928 1.28097 1.33916 1.66257 2.16318 2.17107 2.50787 2.88419 3.25934 3.72133 3.75989 3.97837 3.99175 4.07719 4.09840 4.12389 4.19393 4.22147 4.32260 4.37424 4.43351 4.46141 4.53753 4.59827 4.80757 4.89781 4.91072 4.92614 4.98771 5.12001 5.12873 5.22965 5.33664 5.37382 5.42550 5.55129 5.65475 5.69691 5.87415 6.05109 6.16791 6.45710 6.70226 6.72917 7.12985 8.69874 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.004826 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.336479 B = 5800.117722 C = 7729.809602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.362 6.362 4 C 0.462 3.538 5 O -0.531 6.531 6 C -0.109 4.109 7 C 0.198 3.802 8 H 0.040 0.960 9 C -0.544 4.544 10 H 0.043 0.957 11 C 0.045 3.955 12 N -0.919 5.919 13 Si 0.903 3.097 14 H -0.242 1.242 15 H -0.273 1.273 16 H -0.253 1.253 17 O -0.325 6.325 18 C 0.146 3.854 19 C -0.192 4.192 20 C -0.078 4.078 21 C -0.108 4.108 22 C -0.100 4.100 23 C -0.135 4.135 24 C -0.104 4.104 25 C -0.131 4.131 26 C -0.029 4.029 27 C -0.192 4.192 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.275 0.725 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.139 0.861 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -14.439 3.719 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.307 3.693 5 O -0.420 6.420 6 C -0.146 4.146 7 C 0.142 3.858 8 H 0.058 0.942 9 C -0.582 4.582 10 H 0.061 0.939 11 C -0.157 4.157 12 N -0.556 5.556 13 Si 0.725 3.275 14 H -0.166 1.166 15 H -0.198 1.198 16 H -0.178 1.178 17 O -0.238 6.238 18 C 0.100 3.900 19 C -0.210 4.210 20 C -0.096 4.096 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.152 4.152 24 C -0.122 4.122 25 C -0.149 4.149 26 C -0.029 4.029 27 C -0.211 4.211 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.157 0.843 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.685 -14.568 3.738 15.134 hybrid contribution -0.295 0.428 -1.049 1.171 sum -1.980 -14.140 2.688 14.529 Atomic orbital electron populations 1.21817 0.89804 1.04498 1.03823 1.23338 0.97510 0.79408 1.02344 1.86534 1.23672 1.33817 1.83871 1.24231 0.80719 0.93064 0.71314 1.90624 1.61107 1.43933 1.46351 1.21997 0.95247 0.90227 1.07144 1.20242 0.89942 0.92482 0.83112 0.94240 1.21241 1.43393 0.99680 0.93847 0.93915 1.25563 0.93620 0.95349 1.01162 1.70002 1.40297 1.19760 1.25561 0.86432 0.80881 0.80285 0.79859 1.16556 1.19764 1.17760 1.85861 1.31048 1.69017 1.37892 1.18910 0.85131 0.91494 0.94476 1.21299 0.97039 1.03584 0.99089 1.21153 0.94617 0.95269 0.98562 1.18322 0.96661 1.01804 0.94009 1.21257 0.93689 0.96701 1.00134 1.21172 1.01232 0.99903 0.92914 1.21223 0.93422 0.98328 0.99190 1.21170 0.97800 0.98779 0.97178 1.18024 0.92746 0.97202 0.94928 1.20252 0.98000 1.04654 0.98148 0.91180 0.87866 0.91127 0.91637 0.91603 0.86156 0.85746 0.91566 0.86457 0.83447 0.83701 0.82869 0.82820 0.84273 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.36 -11.79 10.22 -51.37 -0.53 -12.31 16 4 C 0.46 18.14 7.84 71.24 0.56 18.70 16 5 O -0.53 -23.67 15.18 26.95 0.41 -23.27 16 6 C -0.11 -4.44 5.26 29.85 0.16 -4.28 16 7 C 0.20 9.59 0.75 29.85 0.02 9.61 16 8 H 0.04 2.00 3.71 -2.39 -0.01 2.00 16 9 C -0.54 -29.99 8.11 25.60 0.21 -29.78 16 10 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 11 C 0.05 2.45 5.47 84.65 0.46 2.91 16 12 N -0.92 -53.62 13.96 21.45 0.30 -53.32 16 13 Si 0.90 40.05 26.01 68.60 1.78 41.84 16 14 H -0.24 -9.78 7.11 99.48 0.71 -9.07 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.25 -11.09 5.95 99.48 0.59 -10.49 16 17 O -0.32 -16.02 9.03 -78.81 -0.71 -16.73 16 18 C 0.15 6.83 6.53 22.27 0.15 6.98 16 19 C -0.19 -8.72 8.57 22.13 0.19 -8.53 16 20 C -0.08 -2.96 9.76 22.32 0.22 -2.74 16 21 C -0.11 -3.74 5.74 -21.28 -0.12 -3.86 16 22 C -0.10 -2.63 9.77 22.33 0.22 -2.41 16 23 C -0.13 -2.90 9.95 22.05 0.22 -2.68 16 24 C -0.10 -2.27 9.95 22.04 0.22 -2.05 16 25 C -0.13 -3.63 9.77 22.34 0.22 -3.41 16 26 C -0.03 -1.03 5.74 -21.31 -0.12 -1.15 16 27 C -0.19 -7.82 9.68 22.42 0.22 -7.60 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.12 4.60 6.38 -2.39 -0.02 4.58 16 34 H 0.12 4.71 8.14 -2.39 -0.02 4.69 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.12 5.77 5.56 -2.91 -0.02 5.75 16 37 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 38 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 42 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -70.40 353.12 6.17 -64.23 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.91 Total: 29.87 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.99 Total: -30.31 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.30 Total: -53.32 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.83 Total: -52.31 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.78 Total: 41.84 kcal Total: -70.40 6.17 -64.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.357 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds