Wall clock time and date at job start Tue Mar 31 2020 11:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36080 * 116.99685 * 2 1 4 4 C 1.38536 * 120.01846 * 0.02562 * 3 2 1 5 5 C 1.38226 * 120.05380 * 179.97438 * 4 3 2 6 6 C 1.38702 * 120.08610 * 359.97438 * 5 4 3 7 7 O 1.35978 * 119.97911 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00085 * 354.63500 * 7 6 5 9 9 H 1.09007 * 109.46986 * 324.13287 * 8 7 6 10 10 C 1.50692 * 109.47469 * 84.13762 * 8 7 6 11 11 H 1.08000 * 120.00224 * 240.00541 * 10 8 7 12 12 C 1.37879 * 120.00248 * 59.99604 * 10 8 7 13 13 N 1.31512 * 119.99477 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00341 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47028 * 60.00233 * 14 12 10 16 16 H 1.48496 * 109.47464 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47221 * 300.00573 * 14 12 10 18 18 C 1.50708 * 109.47008 * 204.14063 * 8 7 6 19 19 C 1.38237 * 119.99710 * 324.72295 * 18 8 7 20 20 C 1.38234 * 119.99612 * 179.81552 * 19 18 8 21 21 C 1.38228 * 120.00381 * 0.39615 * 20 19 18 22 22 C 1.38237 * 119.99818 * 359.85454 * 21 20 19 23 23 C 1.38227 * 120.00012 * 145.00167 * 18 8 7 24 24 C 1.38664 * 120.03971 * 359.72933 * 6 5 4 25 25 C 1.38545 * 119.94295 * 0.54975 * 24 6 5 26 26 O 1.35989 * 120.04292 * 179.72701 * 25 24 6 27 27 C 1.42899 * 117.00061 * 359.72112 * 26 25 24 28 28 H 1.08991 * 109.47559 * 60.00021 * 1 2 3 29 29 H 1.09000 * 109.46546 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46693 * 299.99496 * 1 2 3 31 31 H 1.07998 * 119.97224 * 359.97438 * 4 3 2 32 32 H 1.07991 * 119.95854 * 179.97438 * 5 4 3 33 33 H 0.96999 * 119.99611 * 179.97438 * 13 12 10 34 34 H 1.08000 * 120.00027 * 359.97438 * 19 18 8 35 35 H 1.07999 * 119.99688 * 180.23004 * 20 19 18 36 36 H 1.08001 * 120.00696 * 179.83724 * 21 20 19 37 37 H 1.08004 * 120.00179 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.00223 * 359.96956 * 23 18 8 39 39 H 1.07994 * 120.03203 * 180.26981 * 24 6 5 40 40 H 1.08996 * 109.47133 * 180.02562 * 27 26 25 41 41 H 1.09004 * 109.47134 * 60.00199 * 27 26 25 42 42 H 1.08994 * 109.47149 * 300.00652 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2125 0.0000 4 6 1.2925 2.3746 0.0005 5 6 1.9192 3.6066 0.0011 6 6 3.3042 3.6822 0.0016 7 8 3.9184 4.8953 0.0016 8 6 3.0806 6.0468 -0.1180 9 1 2.2470 5.8220 -0.7834 10 6 2.5507 6.4258 1.2408 11 1 1.4858 6.4402 1.4204 12 6 3.4252 6.7542 2.2549 13 7 4.7219 6.7370 2.0361 14 14 2.7684 7.2234 3.9394 15 1 1.9815 6.0937 4.4961 16 1 3.9040 7.5303 4.8457 17 1 1.8972 8.4197 3.8155 18 6 3.8795 7.1928 -0.6833 19 6 5.2118 7.3397 -0.3451 20 6 5.9456 8.3887 -0.8667 21 6 5.3451 9.2955 -1.7198 22 6 4.0114 9.1516 -2.0538 23 6 3.2786 8.1003 -1.5353 24 6 4.0627 2.5214 0.0073 25 6 3.4361 1.2858 0.0009 26 8 4.1781 0.1462 0.0008 27 6 5.5991 0.2972 0.0013 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2140 2.3178 0.0005 32 1 1.3298 4.5115 0.0011 33 1 5.3372 6.9684 2.7494 34 1 5.6800 6.6334 0.3244 35 1 6.9875 8.5013 -0.6054 36 1 5.9177 10.1166 -2.1252 37 1 3.5421 9.8603 -2.7201 38 1 2.2366 7.9879 -1.7963 39 1 5.1410 2.5805 0.0121 40 1 6.0689 -0.6863 0.0008 41 1 5.9058 0.8463 0.8916 42 1 5.9064 0.8468 -0.8883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225309361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:20 Heat of formation + Delta-G solvation = -60.580912 kcal Electronic energy + Delta-G solvation = -26097.242082 eV Core-core repulsion = 22394.599671 eV Total energy + Delta-G solvation = -3702.642411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.53816 -40.26200 -39.29284 -39.08538 -36.64362 -34.83801 -32.43992 -31.34053 -31.27380 -30.33836 -28.76538 -28.01779 -27.66895 -25.18630 -23.23186 -23.17930 -22.65900 -21.68718 -19.84049 -18.82066 -18.04394 -17.97983 -17.29086 -17.10091 -16.94061 -16.64881 -16.06706 -15.84203 -15.57376 -15.45462 -15.29434 -15.15274 -14.81567 -14.12443 -13.87279 -13.74007 -13.51094 -13.38055 -13.25286 -13.10673 -12.86361 -12.75092 -12.52363 -12.29135 -12.15864 -12.01585 -11.94967 -11.80255 -11.46759 -11.09564 -10.78103 -10.68093 -9.52823 -9.43614 -9.22407 -8.31852 -7.97072 -6.40641 0.36326 0.66449 0.78523 0.96304 1.38279 1.39603 1.45246 2.33507 2.35462 2.48739 2.79071 2.85253 3.21365 3.32823 3.90598 4.15870 4.26067 4.30995 4.36431 4.38574 4.40503 4.42868 4.48044 4.50037 4.54370 4.61418 4.71301 4.73279 4.77826 4.78536 4.90213 5.03796 5.17777 5.36621 5.41696 5.51874 5.59060 5.63824 5.74805 5.85940 5.93750 6.10056 6.16300 6.31466 6.48410 6.60186 6.69733 7.09040 7.38783 8.81321 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.004441 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.671208 B = 6302.787641 C = 6919.737819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.030 3.970 4 C -0.125 4.125 5 C -0.212 4.212 6 C 0.148 3.852 7 O -0.313 6.313 8 C 0.242 3.758 9 H 0.036 0.964 10 C -0.559 4.559 11 H 0.061 0.939 12 C 0.045 3.955 13 N -0.860 5.860 14 Si 0.945 3.055 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.272 1.272 18 C -0.071 4.071 19 C -0.068 4.068 20 C -0.160 4.160 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.233 4.233 25 C 0.126 3.874 26 O -0.321 6.321 27 C 0.019 3.981 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.160 0.840 32 H 0.131 0.869 33 H 0.262 0.738 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.053 0.947 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -6.496 -5.582 8.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C -0.014 4.014 4 C -0.143 4.143 5 C -0.231 4.231 6 C 0.101 3.899 7 O -0.226 6.226 8 C 0.188 3.812 9 H 0.053 0.947 10 C -0.595 4.595 11 H 0.079 0.921 12 C -0.160 4.160 13 N -0.495 5.495 14 Si 0.770 3.230 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.072 4.072 19 C -0.087 4.087 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.252 4.252 25 C 0.080 3.920 26 O -0.235 6.235 27 C -0.075 4.075 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.177 0.823 32 H 0.149 0.851 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.072 0.928 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.987 -6.790 -5.473 8.944 hybrid contribution -0.401 0.847 1.296 1.600 sum -2.388 -5.942 -4.176 7.646 Atomic orbital electron populations 1.23282 0.77131 1.05271 1.01853 1.86085 1.22720 1.25444 1.90261 1.18088 0.88997 0.85663 1.08680 1.21031 1.00701 0.90005 1.02579 1.21158 0.93675 0.98757 1.09536 1.18990 0.91584 0.86396 0.92978 1.86204 1.38648 1.12053 1.85707 1.18911 0.87393 0.80231 0.94639 0.94664 1.21523 0.93300 1.48771 0.95929 0.92087 1.25603 0.95116 0.93662 1.01629 1.69991 1.01967 1.45217 1.32302 0.85833 0.78141 0.78701 0.80290 1.20083 1.20755 1.19683 1.19928 0.94748 0.97482 0.95037 1.21687 0.94308 0.98355 0.94346 1.21392 1.00118 0.96760 0.99576 1.21274 0.95485 0.99633 0.99184 1.21154 0.94743 0.98419 1.01817 1.21023 0.99866 0.96257 0.98442 1.20275 1.00578 0.89139 1.15233 1.17958 0.88621 0.85217 1.00163 1.86098 1.20442 1.27913 1.89000 1.23309 0.77058 1.05318 1.01811 0.91942 0.86220 0.92421 0.82308 0.85111 0.92769 0.84557 0.86155 0.84340 0.84099 0.86340 0.84243 0.85438 0.92797 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.33 -10.49 10.28 -80.51 -0.83 -11.32 16 3 C 0.03 1.09 6.70 22.56 0.15 1.24 16 4 C -0.12 -4.28 9.03 22.34 0.20 -4.08 16 5 C -0.21 -8.63 8.69 22.38 0.19 -8.43 16 6 C 0.15 6.66 6.59 22.48 0.15 6.81 16 7 O -0.31 -15.68 8.35 -93.30 -0.78 -16.46 16 8 C 0.24 11.84 2.11 29.10 0.06 11.90 16 9 H 0.04 1.65 6.27 -2.38 -0.01 1.63 16 10 C -0.56 -29.08 7.91 25.60 0.20 -28.88 16 11 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 12 C 0.04 2.34 5.24 84.66 0.44 2.78 16 13 N -0.86 -45.84 8.50 21.45 0.18 -45.65 16 14 Si 0.94 42.24 29.54 68.60 2.03 44.26 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 C -0.07 -3.36 4.80 -19.86 -0.10 -3.46 16 19 C -0.07 -3.20 7.46 22.27 0.17 -3.03 16 20 C -0.16 -6.37 10.05 22.27 0.22 -6.15 16 21 C -0.14 -4.76 10.05 22.27 0.22 -4.54 16 22 C -0.14 -4.99 10.05 22.27 0.22 -4.77 16 23 C -0.14 -5.59 9.68 22.27 0.22 -5.38 16 24 C -0.23 -9.39 8.97 22.44 0.20 -9.19 16 25 C 0.13 4.75 6.70 22.56 0.15 4.90 16 26 O -0.32 -10.84 10.28 -79.48 -0.82 -11.66 16 27 C 0.02 0.48 9.81 113.37 1.11 1.59 16 28 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 31 H 0.16 4.26 6.29 -2.91 -0.02 4.24 16 32 H 0.13 5.41 5.65 -2.91 -0.02 5.39 16 33 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 34 H 0.14 7.13 5.50 -2.91 -0.02 7.11 16 35 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 36 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 38 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 39 H 0.14 5.29 6.30 -2.91 -0.02 5.27 16 40 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 1.35 7.65 -2.38 -0.02 1.33 16 42 H 0.06 1.41 7.67 -2.39 -0.02 1.39 16 Total: -1.00 -63.74 347.21 5.76 -57.98 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 1.04 Total: 29.99 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 4.94 Total: -47.15 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.18 Total: -45.65 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -2.42 Total: -39.44 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -63.74 5.76 -57.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225309361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.597 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds