Wall clock time and date at job start Tue Mar 31 2020 11:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35999 * 116.99754 * 2 1 4 4 C 1.38668 * 120.04823 * 0.25930 * 3 2 1 5 5 C 1.38230 * 120.08963 * 180.24852 * 4 3 2 6 6 C 1.38231 * 120.17593 * 359.74585 * 5 4 3 7 7 C 1.38665 * 120.09307 * 359.97438 * 6 5 4 8 8 O 1.35991 * 120.04502 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00256 * 359.97438 * 8 7 6 10 10 C 1.38974 * 120.04082 * 179.97438 * 3 2 1 11 11 O 1.36096 * 120.09021 * 0.03046 * 10 3 2 12 12 C 1.42898 * 117.00008 * 269.71920 * 11 10 3 13 13 H 1.09002 * 109.47259 * 330.00292 * 12 11 10 14 14 C 1.50699 * 109.46964 * 90.00079 * 12 11 10 15 15 H 1.07996 * 120.00370 * 239.99770 * 14 12 11 16 16 C 1.37882 * 119.99790 * 60.00152 * 14 12 11 17 17 N 1.31508 * 120.00257 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99910 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46950 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47438 * 119.99721 * 18 16 14 21 21 H 1.48500 * 109.46931 * 240.00169 * 18 16 14 22 22 C 1.50703 * 109.47171 * 210.00141 * 12 11 10 23 23 C 1.38236 * 119.99787 * 324.72807 * 22 12 11 24 24 C 1.38241 * 119.99636 * 179.81278 * 23 22 12 25 25 C 1.38234 * 120.00115 * 0.39672 * 24 23 22 26 26 C 1.38240 * 119.99714 * 359.85290 * 25 24 23 27 27 C 1.38228 * 120.00011 * 145.00451 * 22 12 11 28 28 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47282 * 300.00101 * 1 2 3 30 30 H 1.09003 * 109.47300 * 59.99862 * 1 2 3 31 31 H 1.08001 * 119.94848 * 359.97303 * 4 3 2 32 32 H 1.07999 * 119.90858 * 179.76716 * 5 4 3 33 33 H 1.08005 * 119.95411 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46870 * 59.99918 * 9 8 7 35 35 H 1.09004 * 109.47276 * 179.97438 * 9 8 7 36 36 H 1.08995 * 109.47073 * 300.00078 * 9 8 7 37 37 H 0.97002 * 120.00075 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.00216 * 359.97438 * 23 22 12 39 39 H 1.08000 * 119.99857 * 180.22806 * 24 23 22 40 40 H 1.07998 * 120.00030 * 179.84064 * 25 24 23 41 41 H 1.08003 * 119.99655 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.00508 * 359.97379 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3753 0.0054 5 6 1.9187 3.6075 0.0002 6 6 3.2988 3.6851 -0.0051 7 6 4.0604 2.5263 -0.0047 8 8 5.4181 2.6039 -0.0094 9 6 5.9932 3.9120 -0.0151 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1459 0.0004 12 6 4.5374 -0.3944 1.2736 13 1 4.6271 0.4141 1.9992 14 6 3.4740 -1.3609 1.7274 15 1 2.9412 -1.1836 2.6499 16 6 3.1812 -2.4717 0.9648 17 7 3.8296 -2.6874 -0.1588 18 14 1.8625 -3.6694 1.5269 19 1 1.2861 -3.2029 2.8135 20 1 0.7908 -3.7427 0.5016 21 1 2.4627 -5.0149 1.7128 22 6 5.8559 -1.1154 1.1594 23 6 6.1685 -1.8049 0.0028 24 6 7.3796 -2.4631 -0.1035 25 6 8.2744 -2.4385 0.9499 26 6 7.9594 -1.7532 2.1085 27 6 6.7500 -1.0919 2.2132 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2136 2.3187 0.0092 32 1 1.3283 4.5118 0.0007 33 1 3.7846 4.6497 -0.0095 34 1 5.6720 4.4540 0.8743 35 1 7.0802 3.8310 -0.0180 36 1 5.6661 4.4487 -0.9056 37 1 3.6234 -3.4687 -0.6955 38 1 5.4679 -1.8273 -0.8187 39 1 7.6255 -2.9987 -1.0084 40 1 9.2194 -2.9548 0.8679 41 1 8.6583 -1.7343 2.9316 42 1 6.5040 -0.5566 3.1184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225339846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:19 Heat of formation + Delta-G solvation = -37.273840 kcal Electronic energy + Delta-G solvation = -27170.956934 eV Core-core repulsion = 23469.325194 eV Total energy + Delta-G solvation = -3701.631740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.99444 -38.33394 -38.11002 -36.38698 -35.60219 -32.84554 -30.55813 -29.60222 -29.06912 -28.98719 -27.33788 -26.71558 -26.07681 -23.08754 -21.74822 -21.28156 -21.15194 -20.03585 -18.17967 -16.94165 -16.31089 -15.90656 -15.88342 -15.70277 -15.31384 -14.91547 -14.74381 -14.29013 -14.23736 -13.98286 -13.33095 -13.23730 -13.02721 -12.49460 -12.40314 -12.12787 -12.02830 -11.69351 -11.44014 -11.34352 -11.16246 -11.03726 -10.91497 -10.82070 -10.42662 -10.34517 -10.21956 -10.10060 -9.76900 -9.25472 -8.65943 -8.22272 -7.68091 -7.64081 -7.42807 -7.25616 -5.84391 -4.12933 1.83564 1.94082 2.59237 2.74135 3.27565 3.35472 3.38715 3.47372 4.14807 4.27241 4.42371 4.95258 5.14182 5.18836 5.33066 5.36573 5.38582 5.49346 5.56584 5.60822 5.63126 5.71367 5.75670 5.90448 5.94159 6.01637 6.07953 6.28547 6.48851 6.58577 6.69005 6.77884 6.88548 6.92424 6.94173 7.01363 7.22631 7.40610 7.61090 7.73239 7.81727 7.98039 8.05755 8.16562 8.21547 8.42483 8.75419 9.21519 9.60150 11.00814 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.007706 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.902085 B = 3632.536065 C = 5823.210196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.258 6.258 3 C 0.151 3.849 4 C -0.243 4.243 5 C -0.071 4.071 6 C -0.241 4.241 7 C 0.122 3.878 8 O -0.298 6.298 9 C 0.029 3.971 10 C 0.073 3.927 11 O -0.299 6.299 12 C 0.253 3.747 13 H 0.015 0.985 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.098 3.902 17 N -0.842 5.842 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.285 1.285 22 C -0.035 4.035 23 C -0.042 4.042 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.128 4.128 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.260 0.740 38 H 0.165 0.835 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 9.825 -0.662 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.168 6.168 3 C 0.103 3.897 4 C -0.262 4.262 5 C -0.090 4.090 6 C -0.261 4.261 7 C 0.075 3.925 8 O -0.210 6.210 9 C -0.066 4.066 10 C 0.026 3.974 11 O -0.216 6.216 12 C 0.200 3.800 13 H 0.033 0.967 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.108 4.108 17 N -0.478 5.478 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.211 1.211 22 C -0.035 4.035 23 C -0.061 4.061 24 C -0.172 4.172 25 C -0.165 4.165 26 C -0.169 4.169 27 C -0.146 4.146 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.182 0.818 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.748 9.211 -0.952 9.290 hybrid contribution -1.136 -0.307 0.616 1.329 sum -1.884 8.904 -0.336 9.107 Atomic orbital electron populations 1.22997 0.80854 1.03194 1.00110 1.86602 1.18688 1.24561 1.86992 1.19187 0.91391 0.84853 0.94277 1.21010 0.99561 0.92134 1.13519 1.20447 0.93525 0.96616 0.98371 1.20878 0.94663 0.96634 1.13879 1.19195 0.82607 0.93145 0.97504 1.86237 1.17099 1.29201 1.88496 1.22985 0.99034 0.83958 1.00663 1.17179 0.87250 0.86061 1.06920 1.86354 1.68268 1.34944 1.32025 1.18801 0.89953 0.90716 0.80500 0.96690 1.21321 1.19312 1.07662 1.07722 0.92391 1.24823 0.94957 0.96728 0.94330 1.69807 1.38269 1.27045 1.12638 0.86673 0.82289 0.81021 0.78724 1.19853 1.20785 1.21147 1.19881 0.93077 0.97370 0.93217 1.21868 0.93048 0.91177 1.00028 1.21135 0.95618 1.02431 0.98047 1.20793 0.99083 1.01798 0.94845 1.20662 0.97269 1.01301 0.97622 1.20746 0.94149 1.01330 0.98404 0.89044 0.93362 0.93599 0.85937 0.86414 0.86036 0.93197 0.88677 0.93155 0.92952 0.81827 0.88130 0.88411 0.88140 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 101.05 0.99 1.38 16 2 O -0.26 -5.63 9.03 -34.32 -0.31 -5.94 16 3 C 0.15 3.15 6.70 -39.15 -0.26 2.89 16 4 C -0.24 -4.08 9.04 -39.43 -0.36 -4.44 16 5 C -0.07 -1.07 10.04 -39.59 -0.40 -1.47 16 6 C -0.24 -3.87 9.04 -39.43 -0.36 -4.23 16 7 C 0.12 2.40 6.70 -39.15 -0.26 2.14 16 8 O -0.30 -5.70 10.28 -34.29 -0.35 -6.05 16 9 C 0.03 0.38 9.81 101.05 0.99 1.37 16 10 C 0.07 1.67 5.58 -39.03 -0.22 1.45 16 11 O -0.30 -7.75 7.82 -45.30 -0.35 -8.10 16 12 C 0.25 6.55 2.65 -29.03 -0.08 6.47 16 13 H 0.02 0.39 7.82 -51.93 -0.41 -0.02 16 14 C -0.52 -14.13 7.82 -34.44 -0.27 -14.40 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.10 2.60 5.08 -17.82 -0.09 2.51 16 17 N -0.84 -22.75 8.50 55.43 0.47 -22.28 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.03 -0.87 4.80 -104.62 -0.50 -1.37 16 23 C -0.04 -1.05 7.46 -39.58 -0.30 -1.34 16 24 C -0.15 -3.36 10.05 -39.58 -0.40 -3.76 16 25 C -0.15 -2.96 10.05 -39.58 -0.40 -3.35 16 26 C -0.15 -3.05 10.05 -39.58 -0.40 -3.44 16 27 C -0.13 -2.88 9.68 -39.59 -0.38 -3.27 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 30 H 0.05 0.62 7.67 -51.93 -0.40 0.23 16 31 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.12 1.57 6.29 -52.48 -0.33 1.24 16 34 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 37 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.16 4.40 5.50 -52.49 -0.29 4.11 16 39 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -30.70 350.06 -8.42 -39.12 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.45 Total: 4.98 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -2.68 Total: -22.88 kcal Atomic # 7 Polarization: -22.75 SS G_CDS: 0.47 Total: -22.28 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.02 Total: -20.09 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.70 -8.42 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225339846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.849 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds