Wall clock time and date at job start Tue Mar 31 2020 11:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35999 * 116.99754 * 2 1 4 4 C 1.38668 * 120.04823 * 0.25930 * 3 2 1 5 5 C 1.38230 * 120.08963 * 180.24852 * 4 3 2 6 6 C 1.38231 * 120.17593 * 359.74585 * 5 4 3 7 7 C 1.38665 * 120.09307 * 359.97438 * 6 5 4 8 8 O 1.35991 * 120.04502 * 180.02562 * 7 6 5 9 9 C 1.42897 * 117.00256 * 359.97438 * 8 7 6 10 10 C 1.38974 * 120.04082 * 179.97438 * 3 2 1 11 11 O 1.36096 * 120.09021 * 0.03046 * 10 3 2 12 12 C 1.42898 * 117.00008 * 269.71920 * 11 10 3 13 13 H 1.09002 * 109.47259 * 330.00292 * 12 11 10 14 14 C 1.50699 * 109.46964 * 90.00079 * 12 11 10 15 15 H 1.07996 * 120.00370 * 239.99770 * 14 12 11 16 16 C 1.37882 * 119.99790 * 60.00152 * 14 12 11 17 17 N 1.31508 * 120.00257 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99910 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46950 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47438 * 119.99721 * 18 16 14 21 21 H 1.48500 * 109.46931 * 240.00169 * 18 16 14 22 22 C 1.50703 * 109.47171 * 210.00141 * 12 11 10 23 23 C 1.38236 * 119.99787 * 324.72807 * 22 12 11 24 24 C 1.38241 * 119.99636 * 179.81278 * 23 22 12 25 25 C 1.38234 * 120.00115 * 0.39672 * 24 23 22 26 26 C 1.38240 * 119.99714 * 359.85290 * 25 24 23 27 27 C 1.38228 * 120.00011 * 145.00451 * 22 12 11 28 28 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47282 * 300.00101 * 1 2 3 30 30 H 1.09003 * 109.47300 * 59.99862 * 1 2 3 31 31 H 1.08001 * 119.94848 * 359.97303 * 4 3 2 32 32 H 1.07999 * 119.90858 * 179.76716 * 5 4 3 33 33 H 1.08005 * 119.95411 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46870 * 59.99918 * 9 8 7 35 35 H 1.09004 * 109.47276 * 179.97438 * 9 8 7 36 36 H 1.08995 * 109.47073 * 300.00078 * 9 8 7 37 37 H 0.97002 * 120.00075 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.00216 * 359.97438 * 23 22 12 39 39 H 1.08000 * 119.99857 * 180.22806 * 24 23 22 40 40 H 1.07998 * 120.00030 * 179.84064 * 25 24 23 41 41 H 1.08003 * 119.99655 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.00508 * 359.97379 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3753 0.0054 5 6 1.9187 3.6075 0.0002 6 6 3.2988 3.6851 -0.0051 7 6 4.0604 2.5263 -0.0047 8 8 5.4181 2.6039 -0.0094 9 6 5.9932 3.9120 -0.0151 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1459 0.0004 12 6 4.5374 -0.3944 1.2736 13 1 4.6271 0.4141 1.9992 14 6 3.4740 -1.3609 1.7274 15 1 2.9412 -1.1836 2.6499 16 6 3.1812 -2.4717 0.9648 17 7 3.8296 -2.6874 -0.1588 18 14 1.8625 -3.6694 1.5269 19 1 1.2861 -3.2029 2.8135 20 1 0.7908 -3.7427 0.5016 21 1 2.4627 -5.0149 1.7128 22 6 5.8559 -1.1154 1.1594 23 6 6.1685 -1.8049 0.0028 24 6 7.3796 -2.4631 -0.1035 25 6 8.2744 -2.4385 0.9499 26 6 7.9594 -1.7532 2.1085 27 6 6.7500 -1.0919 2.2132 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2136 2.3187 0.0092 32 1 1.3283 4.5118 0.0007 33 1 3.7846 4.6497 -0.0095 34 1 5.6720 4.4540 0.8743 35 1 7.0802 3.8310 -0.0180 36 1 5.6661 4.4487 -0.9056 37 1 3.6234 -3.4687 -0.6955 38 1 5.4679 -1.8273 -0.8187 39 1 7.6255 -2.9987 -1.0084 40 1 9.2194 -2.9548 0.8679 41 1 8.6583 -1.7343 2.9316 42 1 6.5040 -0.5566 3.1184 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225339846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:16 Heat of formation + Delta-G solvation = -53.881258 kcal Electronic energy + Delta-G solvation = -27171.677086 eV Core-core repulsion = 23469.325194 eV Total energy + Delta-G solvation = -3702.351892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.41443 -39.84245 -39.71996 -38.04811 -37.00214 -34.75027 -32.33387 -31.30591 -30.49047 -30.36917 -28.61121 -28.50701 -27.35332 -24.93653 -23.30612 -22.78383 -22.62798 -21.80756 -19.61423 -18.68739 -17.79447 -17.55456 -17.40083 -17.18052 -16.73214 -16.62505 -16.22534 -15.82824 -15.60060 -15.51281 -15.07992 -14.84734 -14.60759 -14.10449 -13.84509 -13.60976 -13.44181 -13.19250 -13.07577 -12.98522 -12.79215 -12.65256 -12.33259 -12.25320 -12.14814 -11.92819 -11.76928 -11.50134 -11.48227 -11.13023 -10.63525 -10.03723 -9.40372 -9.16469 -8.98286 -8.85260 -7.81283 -6.18432 0.43919 0.56547 0.85809 1.02755 1.37423 1.39546 1.48791 2.19674 2.45898 2.73635 2.97918 3.28268 3.37491 3.54729 4.02900 4.20535 4.27743 4.30931 4.35437 4.38858 4.41356 4.43270 4.44570 4.50410 4.55316 4.65860 4.70649 4.73411 4.78692 4.90229 5.18799 5.23946 5.32712 5.41290 5.49211 5.54719 5.67748 5.69102 5.73325 5.89996 6.11427 6.21270 6.38134 6.52455 6.58324 6.67205 6.79618 7.41026 7.62364 9.00589 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010434 B = 0.007706 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.902085 B = 3632.536065 C = 5823.210196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.302 6.302 3 C 0.130 3.870 4 C -0.243 4.243 5 C -0.053 4.053 6 C -0.236 4.236 7 C 0.113 3.887 8 O -0.334 6.334 9 C 0.019 3.981 10 C 0.008 3.992 11 O -0.321 6.321 12 C 0.262 3.738 13 H -0.008 1.008 14 C -0.540 4.540 15 H 0.039 0.961 16 C 0.066 3.934 17 N -0.858 5.858 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.286 1.286 22 C -0.063 4.063 23 C -0.065 4.065 24 C -0.160 4.160 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.256 0.744 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 11.543 -0.341 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.214 6.214 3 C 0.083 3.917 4 C -0.261 4.261 5 C -0.071 4.071 6 C -0.255 4.255 7 C 0.067 3.933 8 O -0.248 6.248 9 C -0.075 4.075 10 C -0.038 4.038 11 O -0.238 6.238 12 C 0.208 3.792 13 H 0.010 0.990 14 C -0.576 4.576 15 H 0.058 0.942 16 C -0.138 4.138 17 N -0.493 5.493 18 Si 0.759 3.241 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.212 1.212 22 C -0.063 4.063 23 C -0.084 4.084 24 C -0.178 4.178 25 C -0.157 4.157 26 C -0.160 4.160 27 C -0.162 4.162 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.185 0.815 33 H 0.176 0.824 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.591 10.956 -0.638 10.990 hybrid contribution -1.149 -0.652 0.499 1.412 sum -1.740 10.304 -0.139 10.450 Atomic orbital electron populations 1.23237 0.78519 1.03915 1.02139 1.86508 1.21429 1.26005 1.87437 1.19481 0.91238 0.85904 0.95087 1.21370 1.00885 0.91356 1.12525 1.21051 0.93488 0.97645 0.94918 1.21304 0.95162 0.96736 1.12301 1.19386 0.83274 0.93330 0.97306 1.86183 1.17223 1.32918 1.88505 1.23338 0.99778 0.81943 1.02416 1.17868 0.88421 0.86372 1.11136 1.86275 1.69136 1.36809 1.31577 1.18596 0.90396 0.89736 0.80467 0.99005 1.21309 1.20216 1.08751 1.07356 0.94228 1.25307 0.96373 0.97764 0.94372 1.70019 1.39112 1.27035 1.13148 0.85927 0.80584 0.79072 0.78480 1.19770 1.19850 1.21191 1.20022 0.93617 0.98327 0.94383 1.21635 0.94228 0.93119 0.99402 1.21381 0.94843 1.01920 0.99673 1.21226 1.00001 1.00827 0.93696 1.21099 0.96608 0.99479 0.98830 1.20980 0.95022 1.02177 0.98054 0.89137 0.91577 0.91100 0.82972 0.81507 0.82353 0.91430 0.87192 0.91139 0.93362 0.84775 0.86206 0.84243 0.84206 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.65 16 2 O -0.30 -13.72 9.03 -79.59 -0.72 -14.44 16 3 C 0.13 5.59 6.70 22.55 0.15 5.74 16 4 C -0.24 -7.72 9.04 22.37 0.20 -7.52 16 5 C -0.05 -1.42 10.04 22.27 0.22 -1.19 16 6 C -0.24 -7.03 9.04 22.37 0.20 -6.83 16 7 C 0.11 4.54 6.70 22.55 0.15 4.70 16 8 O -0.33 -13.16 10.28 -79.51 -0.82 -13.97 16 9 C 0.02 0.47 9.81 113.37 1.11 1.59 16 10 C 0.01 0.39 5.58 22.63 0.13 0.52 16 11 O -0.32 -17.88 7.82 -70.49 -0.55 -18.43 16 12 C 0.26 14.52 2.65 29.10 0.08 14.59 16 13 H -0.01 -0.46 7.82 -2.39 -0.02 -0.47 16 14 C -0.54 -30.98 7.82 25.60 0.20 -30.78 16 15 H 0.04 2.32 7.81 -2.91 -0.02 2.29 16 16 C 0.07 3.69 5.08 84.66 0.43 4.12 16 17 N -0.86 -48.89 8.50 21.45 0.18 -48.70 16 18 Si 0.93 44.33 29.54 68.60 2.03 46.36 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 C -0.06 -3.31 4.80 -19.87 -0.10 -3.40 16 23 C -0.06 -3.36 7.46 22.27 0.17 -3.19 16 24 C -0.16 -6.97 10.05 22.27 0.22 -6.74 16 25 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 26 C -0.14 -5.49 10.05 22.27 0.22 -5.27 16 27 C -0.14 -6.60 9.68 22.27 0.22 -6.39 16 28 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.07 1.81 7.65 -2.39 -0.02 1.79 16 30 H 0.07 1.85 7.67 -2.39 -0.02 1.83 16 31 H 0.15 3.80 6.29 -2.91 -0.02 3.79 16 32 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.16 3.44 6.29 -2.91 -0.02 3.42 16 34 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 35 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 1.41 7.66 -2.39 -0.02 1.40 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.13 7.74 5.50 -2.91 -0.02 7.73 16 39 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 42 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -73.45 350.06 6.09 -67.36 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 1.03 Total: 25.31 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 4.95 Total: -43.48 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.18 Total: -48.70 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -2.09 Total: -46.84 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.45 6.09 -67.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225339846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.478 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds