Wall clock time and date at job start Tue Mar 31 2020 11:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 116.99983 * 2 1 4 4 C 1.38719 * 119.99875 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.02196 * 180.02562 * 4 3 2 6 6 C 1.38681 * 120.01476 * 359.97438 * 5 4 3 7 7 O 1.36000 * 120.00495 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00170 * 4.22031 * 7 6 5 9 9 H 1.09001 * 109.47016 * 35.28226 * 8 7 6 10 10 C 1.50704 * 109.47318 * 275.28271 * 8 7 6 11 11 H 1.07994 * 120.00010 * 123.35529 * 10 8 7 12 12 C 1.37883 * 119.99763 * 303.36098 * 10 8 7 13 13 N 1.31515 * 119.99752 * 358.05744 * 12 10 8 14 14 Si 1.86802 * 119.99850 * 178.06600 * 12 10 8 15 15 H 1.48498 * 109.47142 * 94.98717 * 14 12 10 16 16 H 1.48495 * 109.46683 * 214.98800 * 14 12 10 17 17 H 1.48498 * 109.46918 * 334.98493 * 14 12 10 18 18 C 1.53005 * 109.47289 * 155.28155 * 8 7 6 19 19 N 1.46895 * 109.46990 * 294.28001 * 18 8 7 20 20 C 1.46897 * 109.47244 * 63.94162 * 19 18 8 21 21 C 1.46896 * 109.46976 * 183.94228 * 19 18 8 22 22 C 1.46904 * 109.47004 * 303.94062 * 19 18 8 23 23 C 1.38786 * 119.98819 * 0.25462 * 6 5 4 24 24 Cl 1.73600 * 120.00844 * 179.75244 * 23 6 5 25 25 C 1.38244 * 119.97719 * 359.48904 * 23 6 5 26 26 H 1.08996 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47032 * 300.00231 * 1 2 3 28 28 H 1.09003 * 109.47077 * 59.99793 * 1 2 3 29 29 H 1.08002 * 119.98496 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.99740 * 179.97438 * 5 4 3 31 31 H 0.97004 * 119.99816 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46789 * 54.27927 * 18 8 7 33 33 H 1.09001 * 109.47138 * 174.27725 * 18 8 7 34 34 H 1.08994 * 109.47265 * 51.13428 * 20 19 18 35 35 H 1.08999 * 109.46987 * 171.13629 * 20 19 18 36 36 H 1.09000 * 109.46780 * 291.12517 * 20 19 18 37 37 H 1.09003 * 109.47794 * 59.99920 * 21 19 18 38 38 H 1.09002 * 109.47459 * 180.02562 * 21 19 18 39 39 H 1.08999 * 109.47535 * 299.99697 * 21 19 18 40 40 H 1.08999 * 109.47271 * 60.00027 * 22 19 18 41 41 H 1.09003 * 109.47193 * 180.02562 * 22 19 18 42 42 H 1.09005 * 109.46787 * 300.00091 * 22 19 18 43 43 H 1.08004 * 119.99869 * 180.27656 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4316 1.2842 -0.0005 5 6 4.0592 2.5147 0.0000 6 6 3.3047 3.6783 0.0005 7 8 3.9228 4.8897 0.0016 8 6 5.3488 4.8905 -0.0916 9 1 5.6713 4.0726 -0.7359 10 6 5.9421 4.7118 1.2821 11 1 6.6215 3.8947 1.4748 12 6 5.6176 5.5915 2.2930 13 7 4.8204 6.6086 2.0488 14 14 6.3103 5.3387 4.0093 15 1 7.5386 6.1571 4.1728 16 1 5.3011 5.7538 5.0164 17 1 6.6419 3.9042 4.2029 18 6 5.8206 6.2210 -0.6818 19 7 5.3552 6.3331 -2.0706 20 6 3.8869 6.3716 -2.0934 21 6 5.8868 7.5657 -2.6671 22 6 5.8267 5.1739 -2.8400 23 6 1.9187 3.6063 0.0059 24 17 0.9737 5.0625 0.0130 25 6 1.2910 2.3746 0.0000 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0196 0.3782 -0.0005 30 1 5.1378 2.5707 0.0000 31 1 4.5917 7.2273 2.7601 32 1 5.4129 7.0439 -0.0944 33 1 6.9095 6.2629 -0.6589 34 1 3.5326 7.1328 -1.3984 35 1 3.5455 6.6118 -3.1003 36 1 3.4934 5.3988 -1.7988 37 1 6.9763 7.5372 -2.6502 38 1 5.5412 7.6492 -3.6975 39 1 5.5370 8.4259 -2.0963 40 1 5.4323 4.2592 -2.3973 41 1 5.4818 5.2572 -3.8706 42 1 6.9162 5.1453 -2.8229 43 1 0.2124 2.3182 -0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225342335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:59 Heat of formation + Delta-G solvation = 56.261186 kcal Electronic energy + Delta-G solvation = -25833.114724 eV Core-core repulsion = 22217.169041 eV Total energy + Delta-G solvation = -3615.945684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.36904 -41.07783 -39.60428 -37.53112 -36.72362 -34.61327 -32.03509 -31.52517 -30.45247 -30.26857 -29.80890 -28.06406 -27.67168 -25.07829 -23.99932 -23.14094 -21.98758 -19.51903 -19.08336 -18.75657 -18.40899 -18.20904 -17.45193 -17.15310 -16.57460 -16.22154 -15.80098 -15.56336 -15.45302 -15.00936 -14.83081 -14.62260 -14.31514 -14.23910 -14.05871 -13.99605 -13.81699 -13.73944 -13.43165 -13.30824 -13.01759 -12.80979 -12.62183 -12.51516 -12.17566 -11.93871 -11.78816 -11.58639 -11.30834 -11.14569 -10.61803 -10.16738 -9.69878 -8.37896 -7.76545 -5.99614 0.30320 0.31379 0.66455 1.45826 2.09178 2.23084 2.26117 2.28201 2.32670 2.36499 2.46329 2.67287 2.85985 3.01549 3.13200 3.19785 3.40063 3.50161 3.63630 3.66928 3.71826 3.74819 3.83267 3.95356 4.10418 4.11483 4.19679 4.24623 4.29216 4.32283 4.36273 4.44818 4.64563 4.79949 4.83528 5.00294 5.09542 5.30563 5.53638 5.73931 6.06724 6.23089 6.49966 6.77984 7.19025 7.85647 9.25227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.091 3.909 4 C -0.108 4.108 5 C -0.153 4.153 6 C 0.130 3.870 7 O -0.291 6.291 8 C 0.192 3.808 9 H 0.046 0.954 10 C -0.570 4.570 11 H 0.079 0.921 12 C 0.095 3.905 13 N -0.853 5.853 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.266 1.266 18 C 0.000 4.000 19 N -0.273 5.273 20 C -0.042 4.042 21 C -0.040 4.040 22 C -0.047 4.047 23 C -0.046 4.046 24 Cl -0.060 7.060 25 C -0.167 4.167 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.135 0.865 30 H 0.149 0.851 31 H 0.279 0.721 32 H 0.156 0.844 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 2.526 -16.137 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.046 3.954 4 C -0.127 4.127 5 C -0.172 4.172 6 C 0.082 3.918 7 O -0.205 6.205 8 C 0.137 3.863 9 H 0.064 0.936 10 C -0.606 4.606 11 H 0.097 0.903 12 C -0.117 4.117 13 N -0.485 5.485 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.190 1.190 18 C -0.118 4.118 19 N 0.069 4.931 20 C -0.183 4.183 21 C -0.182 4.182 22 C -0.189 4.189 23 C -0.073 4.073 24 Cl -0.031 7.031 25 C -0.186 4.186 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.166 0.834 31 H 0.089 0.911 32 H 0.174 0.826 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.354 2.859 -16.043 16.352 hybrid contribution 0.032 0.101 1.223 1.227 sum 1.386 2.960 -14.820 15.176 Atomic orbital electron populations 1.23064 0.78381 1.04083 1.01353 1.86099 1.21314 1.26253 1.89335 1.18690 0.92085 0.83855 1.00784 1.20371 0.91237 0.98504 1.02550 1.21152 1.00938 0.90451 1.04634 1.18448 0.89708 0.86433 0.97213 1.86350 1.23514 1.24424 1.86205 1.20341 0.78025 0.89908 0.97982 0.93604 1.21193 1.31265 1.15385 0.92778 0.90333 1.24997 0.92710 0.93775 1.00178 1.69655 1.30873 1.13037 1.34982 0.86369 0.79252 0.79691 0.82077 1.19807 1.20217 1.19042 1.24886 1.03466 1.08119 0.75333 1.46415 1.15663 1.13697 1.17346 1.24344 0.76292 1.11297 1.06357 1.23998 1.04259 0.87353 1.02621 1.24065 1.05236 0.90519 0.99063 1.19883 0.89043 0.87930 1.10476 1.98361 1.71813 1.35919 1.97027 1.20883 1.00423 0.90117 1.07179 0.88135 0.92589 0.92717 0.84754 0.83366 0.91128 0.82631 0.85860 0.86025 0.88299 0.85075 0.86838 0.87243 0.86524 0.86384 0.87143 0.86577 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.32 -0.95 10.50 -19.69 -0.21 -1.16 16 3 C 0.09 0.29 6.69 -39.24 -0.26 0.02 16 4 C -0.11 -0.27 9.98 -39.44 -0.39 -0.67 16 5 C -0.15 -0.34 8.72 -39.46 -0.34 -0.68 16 6 C 0.13 0.36 6.05 -39.22 -0.24 0.12 16 7 O -0.29 -0.54 5.42 -19.74 -0.11 -0.64 16 8 C 0.19 0.05 1.37 -27.88 -0.04 0.01 16 9 H 0.05 -0.11 4.02 -51.93 -0.21 -0.31 16 10 C -0.57 -3.43 8.03 -34.44 -0.28 -3.70 16 11 H 0.08 0.56 7.81 -52.49 -0.41 0.15 16 12 C 0.09 0.80 5.25 -17.82 -0.09 0.71 16 13 N -0.85 -7.22 11.01 55.43 0.61 -6.61 16 14 Si 0.90 8.13 29.54 -169.99 -5.02 3.11 16 15 H -0.27 -2.52 7.11 56.52 0.40 -2.12 16 16 H -0.28 -2.95 7.11 56.52 0.40 -2.54 16 17 H -0.27 -2.63 7.11 56.52 0.40 -2.23 16 18 C 0.00 0.00 3.58 -3.82 -0.01 -0.01 16 19 N -0.27 2.64 0.05 -395.62 -0.02 2.62 16 20 C -0.04 0.33 7.14 60.06 0.43 0.76 16 21 C -0.04 0.50 8.00 60.06 0.48 0.98 16 22 C -0.05 0.53 7.55 60.07 0.45 0.98 16 23 C -0.05 -0.15 6.33 -39.38 -0.25 -0.39 16 24 Cl -0.06 -0.17 28.50 -51.86 -1.48 -1.65 16 25 C -0.17 -0.45 8.82 -39.42 -0.35 -0.79 16 26 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 27 H 0.06 -0.03 7.66 -51.93 -0.40 -0.43 16 28 H 0.05 -0.08 7.66 -51.93 -0.40 -0.48 16 29 H 0.13 0.16 8.06 -52.49 -0.42 -0.26 16 30 H 0.15 0.18 5.68 -52.49 -0.30 -0.12 16 31 H 0.28 2.62 8.31 -40.82 -0.34 2.28 16 32 H 0.16 -0.18 6.28 -51.93 -0.33 -0.50 16 33 H 0.12 -0.67 8.10 -51.93 -0.42 -1.09 16 34 H 0.12 -0.74 7.96 -51.93 -0.41 -1.16 16 35 H 0.10 -1.08 8.01 -51.93 -0.42 -1.49 16 36 H 0.13 -0.69 5.09 -51.93 -0.26 -0.96 16 37 H 0.11 -1.49 8.12 -51.93 -0.42 -1.91 16 38 H 0.11 -1.54 8.08 -51.93 -0.42 -1.96 16 39 H 0.12 -1.36 8.14 -51.93 -0.42 -1.78 16 40 H 0.12 -1.11 5.89 -51.93 -0.31 -1.41 16 41 H 0.11 -1.47 8.14 -51.93 -0.42 -1.90 16 42 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 43 H 0.14 0.16 6.29 -52.48 -0.33 -0.17 16 LS Contribution 349.26 15.07 5.26 5.26 Total: 0.00 -16.51 349.26 -7.14 -23.65 By element: Atomic # 1 Polarization: -16.60 SS G_CDS: -6.28 Total: -22.88 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 0.10 Total: -1.69 kcal Atomic # 7 Polarization: -4.59 SS G_CDS: 0.59 Total: -4.00 kcal Atomic # 8 Polarization: -1.49 SS G_CDS: -0.31 Total: -1.80 kcal Atomic # 14 Polarization: 8.13 SS G_CDS: -5.02 Total: 3.11 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.48 Total: -1.65 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -16.51 -7.14 -23.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225342335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.910 kcal (2) G-P(sol) polarization free energy of solvation -16.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds