Wall clock time and date at job start Tue Mar 31 2020 11:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 116.99983 * 2 1 4 4 C 1.38719 * 119.99875 * 180.02562 * 3 2 1 5 5 C 1.38132 * 120.02196 * 180.02562 * 4 3 2 6 6 C 1.38681 * 120.01476 * 359.97438 * 5 4 3 7 7 O 1.36000 * 120.00495 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00170 * 4.22031 * 7 6 5 9 9 H 1.09001 * 109.47016 * 35.28226 * 8 7 6 10 10 C 1.50704 * 109.47318 * 275.28271 * 8 7 6 11 11 H 1.07994 * 120.00010 * 123.35529 * 10 8 7 12 12 C 1.37883 * 119.99763 * 303.36098 * 10 8 7 13 13 N 1.31515 * 119.99752 * 358.05744 * 12 10 8 14 14 Si 1.86802 * 119.99850 * 178.06600 * 12 10 8 15 15 H 1.48498 * 109.47142 * 94.98717 * 14 12 10 16 16 H 1.48495 * 109.46683 * 214.98800 * 14 12 10 17 17 H 1.48498 * 109.46918 * 334.98493 * 14 12 10 18 18 C 1.53005 * 109.47289 * 155.28155 * 8 7 6 19 19 N 1.46895 * 109.46990 * 294.28001 * 18 8 7 20 20 C 1.46897 * 109.47244 * 63.94162 * 19 18 8 21 21 C 1.46896 * 109.46976 * 183.94228 * 19 18 8 22 22 C 1.46904 * 109.47004 * 303.94062 * 19 18 8 23 23 C 1.38786 * 119.98819 * 0.25462 * 6 5 4 24 24 Cl 1.73600 * 120.00844 * 179.75244 * 23 6 5 25 25 C 1.38244 * 119.97719 * 359.48904 * 23 6 5 26 26 H 1.08996 * 109.47056 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47032 * 300.00231 * 1 2 3 28 28 H 1.09003 * 109.47077 * 59.99793 * 1 2 3 29 29 H 1.08002 * 119.98496 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.99740 * 179.97438 * 5 4 3 31 31 H 0.97004 * 119.99816 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46789 * 54.27927 * 18 8 7 33 33 H 1.09001 * 109.47138 * 174.27725 * 18 8 7 34 34 H 1.08994 * 109.47265 * 51.13428 * 20 19 18 35 35 H 1.08999 * 109.46987 * 171.13629 * 20 19 18 36 36 H 1.09000 * 109.46780 * 291.12517 * 20 19 18 37 37 H 1.09003 * 109.47794 * 59.99920 * 21 19 18 38 38 H 1.09002 * 109.47459 * 180.02562 * 21 19 18 39 39 H 1.08999 * 109.47535 * 299.99697 * 21 19 18 40 40 H 1.08999 * 109.47271 * 60.00027 * 22 19 18 41 41 H 1.09003 * 109.47193 * 180.02562 * 22 19 18 42 42 H 1.09005 * 109.46787 * 300.00091 * 22 19 18 43 43 H 1.08004 * 119.99869 * 180.27656 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4316 1.2842 -0.0005 5 6 4.0592 2.5147 0.0000 6 6 3.3047 3.6783 0.0005 7 8 3.9228 4.8897 0.0016 8 6 5.3488 4.8905 -0.0916 9 1 5.6713 4.0726 -0.7359 10 6 5.9421 4.7118 1.2821 11 1 6.6215 3.8947 1.4748 12 6 5.6176 5.5915 2.2930 13 7 4.8204 6.6086 2.0488 14 14 6.3103 5.3387 4.0093 15 1 7.5386 6.1571 4.1728 16 1 5.3011 5.7538 5.0164 17 1 6.6419 3.9042 4.2029 18 6 5.8206 6.2210 -0.6818 19 7 5.3552 6.3331 -2.0706 20 6 3.8869 6.3716 -2.0934 21 6 5.8868 7.5657 -2.6671 22 6 5.8267 5.1739 -2.8400 23 6 1.9187 3.6063 0.0059 24 17 0.9737 5.0625 0.0130 25 6 1.2910 2.3746 0.0000 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0196 0.3782 -0.0005 30 1 5.1378 2.5707 0.0000 31 1 4.5917 7.2273 2.7601 32 1 5.4129 7.0439 -0.0944 33 1 6.9095 6.2629 -0.6589 34 1 3.5326 7.1328 -1.3984 35 1 3.5455 6.6118 -3.1003 36 1 3.4934 5.3988 -1.7988 37 1 6.9763 7.5372 -2.6502 38 1 5.5412 7.6492 -3.6975 39 1 5.5370 8.4259 -2.0963 40 1 5.4323 4.2592 -2.3973 41 1 5.4818 5.2572 -3.8706 42 1 6.9162 5.1453 -2.8229 43 1 0.2124 2.3182 -0.0004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225342335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:58 Heat of formation + Delta-G solvation = 53.763241 kcal Electronic energy + Delta-G solvation = -25833.223043 eV Core-core repulsion = 22217.169041 eV Total energy + Delta-G solvation = -3616.054003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.77560 -41.17941 -39.68046 -37.69335 -36.89416 -35.02089 -32.15550 -31.57610 -30.07283 -29.50557 -29.40132 -28.00786 -27.77902 -24.93919 -23.92012 -23.17871 -21.98823 -19.69202 -19.08374 -18.46956 -17.91444 -17.63210 -17.55660 -17.06774 -16.67318 -16.61456 -15.92460 -15.75778 -15.48835 -14.81185 -14.63202 -14.38424 -14.14864 -13.88580 -13.61350 -13.40710 -13.27784 -13.22289 -13.16789 -13.13133 -12.95576 -12.93003 -12.85597 -12.73384 -12.66014 -12.42570 -12.03172 -11.79548 -11.65572 -11.24242 -10.84765 -10.80695 -9.88611 -8.59609 -8.32997 -6.52375 0.12558 0.47661 1.02591 1.25520 1.31891 1.44681 1.50952 2.28204 2.34514 2.50222 2.68296 2.86964 3.08573 3.13272 3.28420 3.80060 3.96940 4.00978 4.11321 4.12782 4.24668 4.30923 4.33293 4.35336 4.38432 4.41343 4.50523 4.54753 4.63284 4.66795 4.71503 4.76354 4.79498 4.81897 4.92632 4.98414 5.14047 5.18397 5.38773 5.56419 5.62124 5.79249 6.35309 6.45492 6.83790 7.30381 8.61576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.080 3.920 4 C -0.114 4.114 5 C -0.154 4.154 6 C 0.123 3.877 7 O -0.289 6.289 8 C 0.184 3.816 9 H 0.076 0.924 10 C -0.565 4.565 11 H 0.064 0.936 12 C 0.076 3.924 13 N -0.859 5.859 14 Si 0.909 3.091 15 H -0.276 1.276 16 H -0.304 1.304 17 H -0.280 1.280 18 C 0.018 3.982 19 N -0.259 5.259 20 C -0.042 4.042 21 C -0.042 4.042 22 C -0.054 4.054 23 C -0.058 4.058 24 Cl -0.062 7.062 25 C -0.169 4.169 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.265 0.735 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 2.593 -19.181 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.035 3.965 4 C -0.133 4.133 5 C -0.173 4.173 6 C 0.075 3.925 7 O -0.203 6.203 8 C 0.130 3.870 9 H 0.093 0.907 10 C -0.603 4.603 11 H 0.083 0.917 12 C -0.132 4.132 13 N -0.494 5.494 14 Si 0.739 3.261 15 H -0.202 1.202 16 H -0.231 1.231 17 H -0.206 1.206 18 C -0.103 4.103 19 N 0.083 4.917 20 C -0.183 4.183 21 C -0.183 4.183 22 C -0.195 4.195 23 C -0.086 4.086 24 Cl -0.034 7.034 25 C -0.188 4.188 26 H 0.135 0.865 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.117 0.883 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.810 2.923 -19.098 19.405 hybrid contribution -0.112 -0.012 2.127 2.130 sum 1.698 2.911 -16.972 17.303 Atomic orbital electron populations 1.23292 0.76884 1.05428 1.01981 1.86072 1.22987 1.26270 1.89395 1.18841 0.92454 0.84098 1.01133 1.20581 0.91393 0.99037 1.02255 1.21242 1.01286 0.90237 1.04522 1.18608 0.89876 0.86949 0.97075 1.86401 1.23873 1.23867 1.86123 1.20488 0.76866 0.93715 0.95922 0.90687 1.21462 1.29805 1.13540 0.95454 0.91735 1.25073 0.93670 0.94824 0.99610 1.69728 1.32479 1.13509 1.33703 0.86319 0.78290 0.78308 0.83177 1.20175 1.23127 1.20550 1.24144 1.03996 1.03890 0.78254 1.46015 1.14891 1.15895 1.14862 1.24253 0.77142 1.08978 1.07965 1.24202 1.05163 0.85278 1.03632 1.24288 1.06423 0.88677 1.00062 1.20014 0.89350 0.88051 1.11177 1.98353 1.71863 1.36066 1.97085 1.21015 1.01061 0.89885 1.06857 0.86509 0.92501 0.91532 0.83747 0.82556 0.92476 0.85489 0.84096 0.88251 0.84553 0.87636 0.85340 0.84285 0.87418 0.88310 0.84016 0.84754 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.33 -2.08 10.50 -93.36 -0.98 -3.06 16 3 C 0.08 0.54 6.69 22.49 0.15 0.69 16 4 C -0.11 -0.62 9.98 22.36 0.22 -0.40 16 5 C -0.15 -0.73 8.72 22.35 0.19 -0.54 16 6 C 0.12 0.76 6.05 22.51 0.14 0.90 16 7 O -0.29 -1.25 5.42 -93.55 -0.51 -1.75 16 8 C 0.18 0.09 1.37 29.85 0.04 0.13 16 9 H 0.08 -0.41 4.02 -2.39 -0.01 -0.42 16 10 C -0.56 -7.30 8.03 25.60 0.21 -7.09 16 11 H 0.06 0.98 7.81 -2.91 -0.02 0.95 16 12 C 0.08 1.43 5.25 84.66 0.44 1.87 16 13 N -0.86 -16.28 11.01 21.45 0.24 -16.05 16 14 Si 0.91 18.80 29.54 68.60 2.03 20.83 16 15 H -0.28 -5.69 7.11 99.48 0.71 -4.98 16 16 H -0.30 -7.55 7.11 99.48 0.71 -6.85 16 17 H -0.28 -6.28 7.11 99.48 0.71 -5.57 16 18 C 0.02 -0.16 3.58 86.31 0.31 0.15 16 19 N -0.26 5.47 0.05 ******* -0.07 5.40 16 20 C -0.04 0.70 7.14 127.69 0.91 1.62 16 21 C -0.04 1.15 8.00 127.69 1.02 2.17 16 22 C -0.05 1.35 7.55 127.69 0.96 2.32 16 23 C -0.06 -0.41 6.33 22.40 0.14 -0.27 16 24 Cl -0.06 -0.42 28.50 -2.72 -0.08 -0.49 16 25 C -0.17 -1.00 8.82 22.38 0.20 -0.80 16 26 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.06 -0.06 7.66 -2.39 -0.02 -0.08 16 28 H 0.07 -0.22 7.66 -2.39 -0.02 -0.24 16 29 H 0.14 0.38 8.06 -2.91 -0.02 0.35 16 30 H 0.16 0.37 5.68 -2.91 -0.02 0.35 16 31 H 0.27 5.69 8.31 -92.71 -0.77 4.92 16 32 H 0.13 -0.21 6.28 -2.39 -0.01 -0.22 16 33 H 0.14 -1.74 8.10 -2.39 -0.02 -1.76 16 34 H 0.10 -1.16 7.96 -2.39 -0.02 -1.18 16 35 H 0.14 -3.33 8.01 -2.39 -0.02 -3.35 16 36 H 0.11 -1.13 5.09 -2.39 -0.01 -1.14 16 37 H 0.13 -3.79 8.12 -2.39 -0.02 -3.81 16 38 H 0.14 -4.49 8.08 -2.39 -0.02 -4.51 16 39 H 0.11 -2.64 8.14 -2.39 -0.02 -2.66 16 40 H 0.10 -2.02 5.89 -2.39 -0.01 -2.04 16 41 H 0.14 -4.35 8.14 -2.39 -0.02 -4.37 16 42 H 0.13 -3.79 8.14 -2.38 -0.02 -3.81 16 43 H 0.15 0.40 6.29 -2.91 -0.02 0.38 16 Total: 0.00 -41.55 349.26 7.69 -33.86 By element: Atomic # 1 Polarization: -41.59 SS G_CDS: 1.01 Total: -40.58 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.05 Total: 1.84 kcal Atomic # 7 Polarization: -10.81 SS G_CDS: 0.17 Total: -10.64 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -1.49 Total: -4.81 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: 2.03 Total: 20.83 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.49 kcal Total: -41.55 7.69 -33.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225342335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.625 kcal (2) G-P(sol) polarization free energy of solvation -41.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds