Wall clock time and date at job start Tue Mar 31 2020 11:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 109.46832 * 2 1 4 4 C 1.46900 * 109.47160 * 239.99667 * 2 1 3 5 5 C 1.46897 * 109.47056 * 119.99698 * 2 1 3 6 6 C 1.53004 * 109.47340 * 65.79424 * 5 2 1 7 7 H 1.09007 * 109.46789 * 53.22618 * 6 5 2 8 8 C 1.50699 * 109.47240 * 173.22425 * 6 5 2 9 9 H 1.08004 * 119.99913 * 242.47857 * 8 6 5 10 10 C 1.37871 * 119.99997 * 62.48635 * 8 6 5 11 11 N 1.31518 * 119.99905 * 5.31949 * 10 8 6 12 12 Si 1.86801 * 120.00221 * 185.32668 * 10 8 6 13 13 H 1.48501 * 109.47050 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47048 * 119.99347 * 12 10 8 15 15 H 1.48493 * 109.47321 * 239.99839 * 12 10 8 16 16 O 1.42896 * 109.47370 * 293.22990 * 6 5 2 17 17 C 1.35729 * 117.00202 * 149.99688 * 16 6 5 18 18 N 1.32240 * 119.65486 * 359.72467 * 17 16 6 19 19 C 1.31954 * 121.67127 * 179.75723 * 18 17 16 20 20 C 1.38292 * 120.79626 * 0.51846 * 19 18 17 21 21 F 1.35102 * 120.38128 * 179.76622 * 20 19 18 22 22 C 1.38954 * 119.23716 * 359.75269 * 20 19 18 23 23 C 1.38419 * 118.46541 * 359.97438 * 22 20 19 24 24 N 1.48012 * 120.42837 * 179.97438 * 23 22 20 25 25 O 1.21795 * 120.00191 * 0.02814 * 24 23 22 26 26 O 1.21801 * 119.99925 * 180.02562 * 24 23 22 27 27 H 1.08999 * 109.47421 * 289.57880 * 1 2 3 28 28 H 1.08999 * 109.47347 * 49.58387 * 1 2 3 29 29 H 1.09002 * 109.46983 * 169.58215 * 1 2 3 30 30 H 1.09001 * 109.46849 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99630 * 3 2 1 32 32 H 1.09000 * 109.47449 * 60.00192 * 3 2 1 33 33 H 1.08998 * 109.46888 * 300.00342 * 4 2 1 34 34 H 1.09002 * 109.46967 * 59.99952 * 4 2 1 35 35 H 1.09001 * 109.46918 * 180.02562 * 4 2 1 36 36 H 1.09007 * 109.47319 * 305.80019 * 5 2 1 37 37 H 1.08995 * 109.47445 * 185.79553 * 5 2 1 38 38 H 0.96995 * 120.00139 * 5.55737 * 11 10 8 39 39 H 1.07998 * 119.60048 * 180.29480 * 19 18 17 40 40 H 1.08009 * 120.76586 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.5711 -2.1709 1.1289 7 1 1.9143 -2.5917 0.1837 8 6 2.2131 -2.9137 2.2721 9 1 2.9269 -3.6993 2.0726 10 6 1.8893 -2.5905 3.5727 11 7 0.9446 -1.7081 3.8153 12 14 2.7922 -3.4056 4.9903 13 1 3.8016 -4.3539 4.4544 14 1 3.4717 -2.3677 5.8066 15 1 1.8208 -4.1437 5.8369 16 8 0.1503 -2.2956 1.2178 17 6 -0.4167 -3.3509 0.5798 18 7 0.3471 -4.1993 -0.0877 19 6 -0.1615 -5.2410 -0.7182 20 6 -1.5240 -5.4771 -0.7109 21 9 -2.0362 -6.5437 -1.3632 22 6 -2.3603 -4.6049 -0.0248 23 6 -1.7932 -3.5255 0.6304 24 7 -2.6434 -2.5690 1.3741 25 8 -3.8501 -2.7293 1.4128 26 8 -2.1362 -1.6216 1.9475 27 1 -0.3634 0.3444 0.9682 28 1 -0.3634 0.6663 -0.7824 29 1 -0.3633 -1.0107 -0.1858 30 1 3.0486 1.3850 0.0005 31 1 1.5953 1.8988 -0.8900 32 1 1.5953 1.8988 0.8900 33 1 1.5953 -1.7202 -1.1993 34 1 1.5953 -0.1788 -2.0894 35 1 3.0487 -0.6929 -1.1991 36 1 1.5130 -0.2420 2.0864 37 1 3.0437 -0.6035 1.2529 38 1 0.4210 -1.3447 3.0841 39 1 0.4940 -5.9153 -1.2493 40 1 -3.4281 -4.7660 -0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226753308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:36 Heat of formation + Delta-G solvation = 72.733930 kcal Electronic energy + Delta-G solvation = -28652.872309 eV Core-core repulsion = 24505.764218 eV Total energy + Delta-G solvation = -4147.108091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.24638 -43.77927 -43.07141 -41.65233 -39.25495 -37.31747 -35.25516 -34.45032 -32.19800 -31.30762 -30.60587 -30.50739 -27.96183 -27.80441 -25.65021 -24.99323 -24.06984 -22.84461 -20.62281 -20.06623 -19.86262 -19.65890 -18.88561 -18.67041 -18.45476 -18.32037 -18.02770 -17.81484 -17.18406 -16.46354 -16.32550 -15.60502 -15.20011 -15.15183 -15.06492 -14.74084 -14.51824 -14.38816 -14.34407 -14.17406 -14.15395 -14.05426 -13.85061 -13.41706 -12.59832 -12.40606 -12.28539 -12.12958 -12.06289 -11.89992 -11.82856 -11.37023 -11.22825 -10.63337 -10.19855 -9.76747 -8.08862 -6.13749 -1.35877 -0.50790 0.00958 0.21885 0.38020 1.45925 1.95562 2.01660 2.05177 2.10820 2.25864 2.33455 2.41172 2.45645 2.66099 2.93689 2.96455 3.04292 3.10385 3.17866 3.23196 3.26419 3.36696 3.39781 3.45892 3.53163 3.56567 3.58727 3.80140 3.82558 3.88342 3.96401 4.17258 4.23278 4.62080 4.77828 5.40312 5.78145 5.84195 6.08615 6.64447 6.79635 7.04249 7.65704 9.23507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.275 5.275 3 C -0.042 4.042 4 C -0.048 4.048 5 C -0.006 4.006 6 C 0.165 3.835 7 H 0.081 0.919 8 C -0.622 4.622 9 H 0.079 0.921 10 C 0.046 3.954 11 N -0.853 5.853 12 Si 1.064 2.936 13 H -0.281 1.281 14 H -0.275 1.275 15 H -0.279 1.279 16 O -0.282 6.282 17 C 0.398 3.602 18 N -0.494 5.494 19 C 0.175 3.825 20 C 0.003 3.997 21 F -0.115 7.115 22 C -0.012 4.012 23 C -0.115 4.115 24 N 0.040 4.960 25 O -0.177 6.177 26 O -0.116 6.116 27 H 0.129 0.871 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.286 0.714 39 H 0.191 0.809 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 8.298 -15.262 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 N 0.067 4.933 3 C -0.184 4.184 4 C -0.190 4.190 5 C -0.125 4.125 6 C 0.112 3.888 7 H 0.099 0.901 8 C -0.658 4.658 9 H 0.097 0.903 10 C -0.168 4.168 11 N -0.486 5.486 12 Si 0.889 3.111 13 H -0.207 1.207 14 H -0.200 1.200 15 H -0.204 1.204 16 O -0.187 6.187 17 C 0.217 3.783 18 N -0.218 5.218 19 C 0.015 3.985 20 C -0.020 4.020 21 F -0.093 7.093 22 C -0.039 4.039 23 C -0.203 4.203 24 N 0.560 4.440 25 O -0.385 6.385 26 O -0.340 6.340 27 H 0.148 0.852 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.101 0.899 39 H 0.208 0.792 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.323 8.231 -13.855 16.972 hybrid contribution -1.303 -0.441 -1.437 1.989 sum 4.020 7.791 -15.291 17.626 Atomic orbital electron populations 1.24298 0.76394 1.08495 1.09152 1.46427 1.15493 1.14998 1.16396 1.24076 1.05184 0.80530 1.08599 1.24116 1.05452 1.02323 0.87071 1.25017 1.04689 0.96227 0.86581 1.20896 0.76178 0.89575 1.02173 0.90096 1.22154 1.29360 1.23645 0.90653 0.90265 1.26160 0.95699 0.94383 1.00588 1.70910 1.16418 1.23670 1.37609 0.83519 0.76056 0.76659 0.74831 1.20662 1.20023 1.20435 1.86781 1.29007 1.38605 1.64289 1.19423 0.86000 0.87503 0.85378 1.67958 1.36174 1.05273 1.12370 1.23245 0.91766 0.92424 0.91097 1.18198 0.92464 0.89398 1.01909 1.91616 1.87108 1.52062 1.78551 1.21388 1.03497 0.89074 0.89932 1.21150 0.89247 0.99083 1.10791 1.43062 1.00986 1.00796 0.99196 1.94579 0.96207 1.80637 1.67076 1.94609 1.76911 1.20424 1.42076 0.85208 0.87369 0.86957 0.86438 0.86830 0.86190 0.86481 0.86837 0.86091 0.84233 0.84410 0.89924 0.79226 0.80344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.37 7.22 60.07 0.43 0.80 16 2 N -0.27 2.86 0.05 -395.62 -0.02 2.84 16 3 C -0.04 0.56 7.99 60.06 0.48 1.04 16 4 C -0.05 0.57 7.49 60.06 0.45 1.02 16 5 C -0.01 0.03 3.52 -3.82 -0.01 0.02 16 6 C 0.16 0.03 1.57 -27.88 -0.04 -0.02 16 7 H 0.08 -0.15 4.65 -51.93 -0.24 -0.39 16 8 C -0.62 -3.97 8.88 -34.44 -0.31 -4.28 16 9 H 0.08 0.64 7.82 -52.48 -0.41 0.23 16 10 C 0.05 0.41 5.22 -17.82 -0.09 0.32 16 11 N -0.85 -8.55 12.82 55.43 0.71 -7.84 16 12 Si 1.06 9.06 29.91 -169.99 -5.08 3.98 16 13 H -0.28 -2.29 7.11 56.52 0.40 -1.89 16 14 H -0.27 -2.37 7.11 56.52 0.40 -1.97 16 15 H -0.28 -2.83 7.11 56.52 0.40 -2.43 16 16 O -0.28 -0.41 3.10 -40.93 -0.13 -0.54 16 17 C 0.40 0.62 6.68 -17.15 -0.11 0.51 16 18 N -0.49 -0.09 8.64 -13.28 -0.11 -0.20 16 19 C 0.17 -0.31 11.17 -17.48 -0.20 -0.51 16 20 C 0.00 0.00 7.34 -39.30 -0.29 -0.29 16 21 F -0.11 0.03 17.28 2.25 0.04 0.07 16 22 C -0.01 0.00 9.65 -39.25 -0.38 -0.38 16 23 C -0.12 -0.24 6.89 -79.66 -0.55 -0.79 16 24 N 0.04 0.17 4.45 34.10 0.15 0.32 16 25 O -0.18 -0.95 18.52 -29.46 -0.55 -1.49 16 26 O -0.12 -0.58 17.27 -36.47 -0.63 -1.21 16 27 H 0.13 -0.91 7.90 -51.93 -0.41 -1.32 16 28 H 0.11 -1.29 7.98 -51.93 -0.41 -1.70 16 29 H 0.11 -0.70 5.08 -51.93 -0.26 -0.96 16 30 H 0.12 -1.66 8.11 -51.93 -0.42 -2.08 16 31 H 0.11 -1.71 8.06 -51.93 -0.42 -2.13 16 32 H 0.12 -1.52 8.14 -51.93 -0.42 -1.94 16 33 H 0.12 -1.11 5.83 -51.93 -0.30 -1.41 16 34 H 0.11 -1.60 8.14 -51.93 -0.42 -2.02 16 35 H 0.12 -1.56 8.14 -51.93 -0.42 -1.98 16 36 H 0.14 -0.28 5.85 -51.93 -0.30 -0.59 16 37 H 0.14 -0.84 8.07 -51.93 -0.42 -1.26 16 38 H 0.29 2.22 4.82 -40.82 -0.20 2.03 16 39 H 0.19 -0.95 8.06 -52.49 -0.42 -1.37 16 40 H 0.18 -0.20 7.69 -52.48 -0.40 -0.61 16 LS Contribution 331.33 15.07 4.99 4.99 Total: 0.00 -19.51 331.33 -5.94 -25.44 By element: Atomic # 1 Polarization: -19.12 SS G_CDS: -4.69 Total: -23.81 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.62 Total: -2.56 kcal Atomic # 7 Polarization: -5.60 SS G_CDS: 0.73 Total: -4.88 kcal Atomic # 8 Polarization: -1.94 SS G_CDS: -1.30 Total: -3.25 kcal Atomic # 9 Polarization: 0.03 SS G_CDS: 0.04 Total: 0.07 kcal Atomic # 14 Polarization: 9.06 SS G_CDS: -5.08 Total: 3.98 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -19.51 -5.94 -25.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226753308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.177 kcal (2) G-P(sol) polarization free energy of solvation -19.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds