Wall clock time and date at job start Tue Mar 31 2020 11:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 109.46832 * 2 1 4 4 C 1.46900 * 109.47160 * 239.99667 * 2 1 3 5 5 C 1.46897 * 109.47056 * 119.99698 * 2 1 3 6 6 C 1.53004 * 109.47340 * 65.79424 * 5 2 1 7 7 H 1.09007 * 109.46789 * 53.22618 * 6 5 2 8 8 C 1.50699 * 109.47240 * 173.22425 * 6 5 2 9 9 H 1.08004 * 119.99913 * 242.47857 * 8 6 5 10 10 C 1.37871 * 119.99997 * 62.48635 * 8 6 5 11 11 N 1.31518 * 119.99905 * 5.31949 * 10 8 6 12 12 Si 1.86801 * 120.00221 * 185.32668 * 10 8 6 13 13 H 1.48501 * 109.47050 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47048 * 119.99347 * 12 10 8 15 15 H 1.48493 * 109.47321 * 239.99839 * 12 10 8 16 16 O 1.42896 * 109.47370 * 293.22990 * 6 5 2 17 17 C 1.35729 * 117.00202 * 149.99688 * 16 6 5 18 18 N 1.32240 * 119.65486 * 359.72467 * 17 16 6 19 19 C 1.31954 * 121.67127 * 179.75723 * 18 17 16 20 20 C 1.38292 * 120.79626 * 0.51846 * 19 18 17 21 21 F 1.35102 * 120.38128 * 179.76622 * 20 19 18 22 22 C 1.38954 * 119.23716 * 359.75269 * 20 19 18 23 23 C 1.38419 * 118.46541 * 359.97438 * 22 20 19 24 24 N 1.48012 * 120.42837 * 179.97438 * 23 22 20 25 25 O 1.21795 * 120.00191 * 0.02814 * 24 23 22 26 26 O 1.21801 * 119.99925 * 180.02562 * 24 23 22 27 27 H 1.08999 * 109.47421 * 289.57880 * 1 2 3 28 28 H 1.08999 * 109.47347 * 49.58387 * 1 2 3 29 29 H 1.09002 * 109.46983 * 169.58215 * 1 2 3 30 30 H 1.09001 * 109.46849 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99630 * 3 2 1 32 32 H 1.09000 * 109.47449 * 60.00192 * 3 2 1 33 33 H 1.08998 * 109.46888 * 300.00342 * 4 2 1 34 34 H 1.09002 * 109.46967 * 59.99952 * 4 2 1 35 35 H 1.09001 * 109.46918 * 180.02562 * 4 2 1 36 36 H 1.09007 * 109.47319 * 305.80019 * 5 2 1 37 37 H 1.08995 * 109.47445 * 185.79553 * 5 2 1 38 38 H 0.96995 * 120.00139 * 5.55737 * 11 10 8 39 39 H 1.07998 * 119.60048 * 180.29480 * 19 18 17 40 40 H 1.08009 * 120.76586 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9587 -0.6924 1.1995 6 6 1.5711 -2.1709 1.1289 7 1 1.9143 -2.5917 0.1837 8 6 2.2131 -2.9137 2.2721 9 1 2.9269 -3.6993 2.0726 10 6 1.8893 -2.5905 3.5727 11 7 0.9446 -1.7081 3.8153 12 14 2.7922 -3.4056 4.9903 13 1 3.8016 -4.3539 4.4544 14 1 3.4717 -2.3677 5.8066 15 1 1.8208 -4.1437 5.8369 16 8 0.1503 -2.2956 1.2178 17 6 -0.4167 -3.3509 0.5798 18 7 0.3471 -4.1993 -0.0877 19 6 -0.1615 -5.2410 -0.7182 20 6 -1.5240 -5.4771 -0.7109 21 9 -2.0362 -6.5437 -1.3632 22 6 -2.3603 -4.6049 -0.0248 23 6 -1.7932 -3.5255 0.6304 24 7 -2.6434 -2.5690 1.3741 25 8 -3.8501 -2.7293 1.4128 26 8 -2.1362 -1.6216 1.9475 27 1 -0.3634 0.3444 0.9682 28 1 -0.3634 0.6663 -0.7824 29 1 -0.3633 -1.0107 -0.1858 30 1 3.0486 1.3850 0.0005 31 1 1.5953 1.8988 -0.8900 32 1 1.5953 1.8988 0.8900 33 1 1.5953 -1.7202 -1.1993 34 1 1.5953 -0.1788 -2.0894 35 1 3.0487 -0.6929 -1.1991 36 1 1.5130 -0.2420 2.0864 37 1 3.0437 -0.6035 1.2529 38 1 0.4210 -1.3447 3.0841 39 1 0.4940 -5.9153 -1.2493 40 1 -3.4281 -4.7660 -0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226753308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:35 Heat of formation + Delta-G solvation = 66.271285 kcal Electronic energy + Delta-G solvation = -28653.152550 eV Core-core repulsion = 24505.764218 eV Total energy + Delta-G solvation = -4147.388332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.23148 -43.48619 -42.98542 -41.66732 -39.27015 -37.63091 -35.58806 -34.52288 -32.25542 -31.19648 -29.73211 -29.66742 -28.10253 -27.79375 -25.75745 -24.62720 -24.16941 -22.68833 -20.79708 -20.25621 -20.02595 -19.63970 -18.75392 -18.61272 -18.01894 -17.93315 -17.79144 -17.58758 -17.18680 -16.43265 -16.27823 -15.80375 -15.50663 -14.79181 -14.59072 -14.47897 -14.29875 -14.18054 -13.99688 -13.49353 -13.42126 -13.36581 -13.27627 -13.12312 -12.83918 -12.76545 -12.64493 -12.57325 -12.27359 -12.11137 -12.07652 -11.89212 -11.29290 -10.99662 -10.84270 -9.87317 -8.66864 -6.67120 -1.49316 -0.53106 -0.00980 0.19573 0.77615 1.39122 1.55868 1.58927 1.67539 1.95539 2.38635 2.43786 2.64059 2.69071 2.86450 2.89948 3.04277 3.12661 3.26329 3.48552 3.75539 3.83101 3.85330 4.04023 4.12176 4.15344 4.21475 4.29011 4.32131 4.40277 4.46045 4.60630 4.65847 4.72816 4.79581 4.84517 5.12466 5.50129 5.74921 6.01380 6.13835 6.43263 6.54083 7.12836 8.70310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.259 5.259 3 C -0.046 4.046 4 C -0.053 4.053 5 C 0.011 3.989 6 C 0.163 3.837 7 H 0.104 0.896 8 C -0.624 4.624 9 H 0.059 0.941 10 C 0.021 3.979 11 N -0.897 5.897 12 Si 1.078 2.922 13 H -0.275 1.275 14 H -0.278 1.278 15 H -0.308 1.308 16 O -0.282 6.282 17 C 0.392 3.608 18 N -0.499 5.499 19 C 0.192 3.808 20 C 0.011 3.989 21 F -0.114 7.114 22 C -0.013 4.013 23 C -0.131 4.131 24 N 0.043 4.957 25 O -0.203 6.203 26 O -0.135 6.135 27 H 0.106 0.894 28 H 0.147 0.853 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.294 0.706 39 H 0.229 0.771 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.213 8.865 -18.493 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 N 0.083 4.917 3 C -0.185 4.185 4 C -0.194 4.194 5 C -0.110 4.110 6 C 0.110 3.890 7 H 0.121 0.879 8 C -0.661 4.661 9 H 0.077 0.923 10 C -0.188 4.188 11 N -0.534 5.534 12 Si 0.906 3.094 13 H -0.200 1.200 14 H -0.204 1.204 15 H -0.236 1.236 16 O -0.186 6.186 17 C 0.211 3.789 18 N -0.223 5.223 19 C 0.032 3.968 20 C -0.012 4.012 21 F -0.093 7.093 22 C -0.039 4.039 23 C -0.219 4.219 24 N 0.558 4.442 25 O -0.407 6.407 26 O -0.357 6.357 27 H 0.125 0.875 28 H 0.165 0.835 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.163 0.837 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.174 0.826 38 H 0.109 0.891 39 H 0.245 0.755 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.479 8.813 -17.082 20.284 hybrid contribution -1.630 -0.742 -0.597 1.888 sum 4.849 8.071 -17.679 20.030 Atomic orbital electron populations 1.24253 0.77245 1.07690 1.09314 1.46038 1.14654 1.16285 1.14722 1.24316 1.06222 0.78211 1.09788 1.24327 1.06614 1.01282 0.87160 1.24294 1.05360 0.93423 0.87939 1.20966 0.74808 0.92434 1.00794 0.87864 1.22266 1.28595 1.23401 0.91851 0.92284 1.26185 0.96127 0.94937 1.01590 1.70868 1.18174 1.25849 1.38463 0.83342 0.75352 0.76170 0.74571 1.20021 1.20404 1.23559 1.86769 1.28963 1.38362 1.64523 1.19579 0.86032 0.87671 0.85576 1.68070 1.35797 1.05730 1.12689 1.23859 0.91897 0.91607 0.89420 1.18182 0.92617 0.88968 1.01458 1.91625 1.87192 1.51994 1.78483 1.21534 1.04226 0.88600 0.89566 1.21175 0.89132 0.99552 1.12051 1.43344 1.00978 1.00943 0.98944 1.94552 0.97161 1.81076 1.67926 1.94599 1.76832 1.21403 1.42903 0.87496 0.83461 0.89507 0.84872 0.83711 0.87015 0.88820 0.83449 0.84343 0.86943 0.82632 0.89134 0.75494 0.79552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.77 7.22 127.69 0.92 1.69 16 2 N -0.26 5.74 0.05 ******* -0.07 5.68 16 3 C -0.05 1.31 7.99 127.69 1.02 2.33 16 4 C -0.05 1.39 7.49 127.69 0.96 2.35 16 5 C 0.01 -0.11 3.52 86.31 0.30 0.20 16 6 C 0.16 0.14 1.57 29.85 0.05 0.19 16 7 H 0.10 -0.43 4.65 -2.38 -0.01 -0.44 16 8 C -0.62 -8.86 8.88 25.60 0.23 -8.63 16 9 H 0.06 1.03 7.82 -2.91 -0.02 1.01 16 10 C 0.02 0.44 5.22 84.65 0.44 0.88 16 11 N -0.90 -20.52 12.82 21.45 0.27 -20.25 16 12 Si 1.08 21.01 29.91 68.60 2.05 23.07 16 13 H -0.28 -4.89 7.11 99.48 0.71 -4.18 16 14 H -0.28 -5.42 7.11 99.48 0.71 -4.71 16 15 H -0.31 -7.36 7.11 99.48 0.71 -6.65 16 16 O -0.28 -1.19 3.10 -69.45 -0.22 -1.40 16 17 C 0.39 1.49 6.68 84.78 0.57 2.05 16 18 N -0.50 0.14 8.64 -308.76 -2.67 -2.53 16 19 C 0.19 -1.01 11.17 84.69 0.95 -0.06 16 20 C 0.01 -0.03 7.34 22.45 0.16 0.13 16 21 F -0.11 0.22 17.28 44.97 0.78 1.00 16 22 C -0.01 -0.01 9.65 22.48 0.22 0.21 16 23 C -0.13 -0.69 6.89 36.57 0.25 -0.44 16 24 N 0.04 0.47 4.45 -46.02 -0.20 0.26 16 25 O -0.20 -2.63 18.52 18.89 0.35 -2.28 16 26 O -0.13 -1.73 17.27 25.58 0.44 -1.29 16 27 H 0.11 -1.34 7.90 -2.39 -0.02 -1.36 16 28 H 0.15 -3.82 7.98 -2.39 -0.02 -3.84 16 29 H 0.09 -1.03 5.08 -2.39 -0.01 -1.04 16 30 H 0.13 -4.15 8.11 -2.39 -0.02 -4.17 16 31 H 0.14 -4.94 8.06 -2.39 -0.02 -4.96 16 32 H 0.11 -2.92 8.14 -2.39 -0.02 -2.94 16 33 H 0.09 -1.92 5.83 -2.39 -0.01 -1.93 16 34 H 0.15 -4.75 8.14 -2.39 -0.02 -4.77 16 35 H 0.14 -4.02 8.14 -2.39 -0.02 -4.04 16 36 H 0.11 -0.28 5.85 -2.38 -0.01 -0.29 16 37 H 0.16 -2.03 8.07 -2.39 -0.02 -2.05 16 38 H 0.29 5.40 4.82 -92.71 -0.45 4.96 16 39 H 0.23 -3.00 8.06 -2.91 -0.02 -3.02 16 40 H 0.19 -0.31 7.69 -2.91 -0.02 -0.33 16 Total: 0.00 -49.80 331.33 8.20 -41.60 By element: Atomic # 1 Polarization: -46.16 SS G_CDS: 1.40 Total: -44.76 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 6.06 Total: 0.91 kcal Atomic # 7 Polarization: -14.17 SS G_CDS: -2.67 Total: -16.83 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: 0.58 Total: -4.97 kcal Atomic # 9 Polarization: 0.22 SS G_CDS: 0.78 Total: 1.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: 2.05 Total: 23.07 kcal Total: -49.80 8.20 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226753308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.867 kcal (2) G-P(sol) polarization free energy of solvation -49.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds