Wall clock time and date at job start Tue Mar 31 2020 11:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35973 * 116.99815 * 2 1 4 4 C 1.38700 * 119.98345 * 359.72463 * 3 2 1 5 5 C 1.38233 * 120.08556 * 179.76575 * 4 3 2 6 6 C 1.38531 * 120.05671 * 0.51113 * 5 4 3 7 7 O 1.36074 * 120.02272 * 179.72640 * 6 5 4 8 8 C 1.42896 * 116.99725 * 0.02562 * 7 6 5 9 9 C 1.39135 * 119.96031 * 359.74539 * 6 5 4 10 10 O 1.35987 * 120.04247 * 179.97438 * 9 6 5 11 11 C 1.42905 * 116.99618 * 185.85197 * 10 9 6 12 12 H 1.08990 * 109.47351 * 33.81408 * 11 10 9 13 13 C 1.50707 * 109.47084 * 273.81163 * 11 10 9 14 14 H 1.07998 * 120.00121 * 330.61023 * 13 11 10 15 15 C 1.37876 * 119.99690 * 150.61829 * 13 11 10 16 16 N 1.31512 * 119.99744 * 180.21765 * 15 13 11 17 17 Si 1.86801 * 120.00112 * 0.20837 * 15 13 11 18 18 H 1.48496 * 109.47074 * 87.50399 * 17 15 13 19 19 H 1.48501 * 109.46657 * 207.50503 * 17 15 13 20 20 H 1.48499 * 109.47068 * 327.49783 * 17 15 13 21 21 C 1.50699 * 109.47001 * 153.81503 * 11 10 9 22 22 C 1.38235 * 120.00211 * 38.54528 * 21 11 10 23 23 C 1.38242 * 120.00312 * 179.79063 * 22 21 11 24 24 C 1.38236 * 119.99600 * 0.44250 * 23 22 21 25 25 C 1.38233 * 120.00163 * 359.81044 * 24 23 22 26 26 C 1.38237 * 120.00146 * 218.82023 * 21 11 10 27 27 C 1.38541 * 119.91080 * 359.97438 * 9 6 5 28 28 H 1.09007 * 109.47187 * 59.99708 * 1 2 3 29 29 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47234 * 299.99964 * 1 2 3 31 31 H 1.07992 * 119.95727 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.97160 * 180.25719 * 5 4 3 33 33 H 1.09002 * 109.47351 * 300.00195 * 8 7 6 34 34 H 1.09004 * 109.47426 * 60.00345 * 8 7 6 35 35 H 1.08997 * 109.46961 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00160 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.00019 * 359.97438 * 22 21 11 38 38 H 1.07998 * 120.00190 * 180.27455 * 23 22 21 39 39 H 1.07999 * 120.00053 * 179.83575 * 24 23 22 40 40 H 1.08002 * 120.00052 * 180.02562 * 25 24 23 41 41 H 1.07999 * 119.99893 * 359.97438 * 26 21 11 42 42 H 1.08005 * 120.02868 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3745 -0.0058 5 6 1.9158 3.6073 -0.0009 6 6 3.2990 3.6838 -0.0009 7 8 3.9138 4.8977 -0.0017 8 6 3.0711 6.0517 -0.0020 9 6 4.0593 2.5185 -0.0005 10 8 5.4172 2.5916 -0.0011 11 6 6.1330 1.3615 -0.1304 12 1 5.5727 0.6807 -0.7712 13 6 6.3111 0.7384 1.2302 14 1 6.3726 1.3655 2.1074 15 6 6.3957 -0.6320 1.3551 16 7 6.5469 -1.1759 2.5429 17 14 6.2954 -1.7162 -0.1627 18 1 7.6520 -1.8813 -0.7437 19 1 5.7530 -3.0463 0.2141 20 1 5.4012 -1.0830 -1.1651 21 6 7.4844 1.6285 -0.7414 22 6 8.1925 2.7610 -0.3850 23 6 9.4342 3.0038 -0.9422 24 6 9.9636 2.1188 -1.8627 25 6 9.2532 0.9890 -2.2231 26 6 8.0135 0.7440 -1.6626 27 6 3.4311 1.2837 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2122 2.3169 -0.0107 32 1 1.3255 4.5117 -0.0012 33 1 2.4414 6.0416 -0.8917 34 1 2.4421 6.0425 0.8883 35 1 3.6867 6.9511 -0.0031 36 1 6.6060 -2.1401 2.6309 37 1 7.7771 3.4546 0.3311 38 1 9.9893 3.8862 -0.6604 39 1 10.9324 2.3098 -2.3001 40 1 9.6670 0.2974 -2.9420 41 1 7.4585 -0.1387 -1.9441 42 1 4.0194 0.3780 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227075722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:33 Heat of formation + Delta-G solvation = -46.952642 kcal Electronic energy + Delta-G solvation = -26305.247045 eV Core-core repulsion = 22603.195601 eV Total energy + Delta-G solvation = -3702.051444 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25327 -38.87669 -38.56126 -37.50050 -35.35525 -33.06627 -31.32190 -30.30101 -30.01255 -29.03026 -27.29570 -27.03971 -26.58719 -23.37325 -22.10448 -21.97788 -21.33849 -20.06560 -18.35732 -17.33531 -17.25728 -16.72800 -16.06234 -15.81881 -15.60059 -15.25692 -14.93901 -14.46124 -14.42691 -14.20621 -13.80964 -13.68893 -13.25594 -12.92172 -12.62864 -12.53271 -12.50820 -12.23769 -12.05868 -11.87054 -11.58286 -11.33581 -11.14609 -11.04278 -10.85727 -10.56965 -10.39195 -10.14481 -9.90139 -9.77088 -9.45842 -8.82439 -8.25990 -8.03939 -7.88628 -7.06463 -6.30230 -4.33366 1.74389 1.92423 2.02669 2.08132 3.13919 3.16724 3.23983 3.50850 3.73233 4.04340 4.17653 4.18892 4.51565 4.99981 5.02398 5.17861 5.26091 5.28009 5.31899 5.33593 5.48654 5.50981 5.54991 5.58398 5.63554 5.70353 5.80933 5.91361 6.08538 6.15862 6.22124 6.24279 6.39306 6.53076 6.63627 6.71513 6.76601 7.01622 7.08375 7.17565 7.24217 7.37549 7.61245 7.67222 7.75471 8.13760 8.38913 8.81482 9.27684 10.81544 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.006010 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.270141 B = 4658.094176 C = 6399.644096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.129 3.871 4 C -0.225 4.225 5 C -0.141 4.141 6 C 0.048 3.952 7 O -0.305 6.305 8 C 0.030 3.970 9 C 0.178 3.822 10 O -0.295 6.295 11 C 0.204 3.796 12 H 0.051 0.949 13 C -0.528 4.528 14 H 0.089 0.911 15 C 0.088 3.912 16 N -0.876 5.876 17 Si 0.852 3.148 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.257 1.257 21 C -0.040 4.040 22 C -0.094 4.094 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.121 4.121 26 C -0.131 4.131 27 C -0.195 4.195 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 7.736 -7.928 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C 0.085 3.915 4 C -0.245 4.245 5 C -0.159 4.159 6 C 0.003 3.997 7 O -0.219 6.219 8 C -0.066 4.066 9 C 0.130 3.870 10 O -0.207 6.207 11 C 0.149 3.851 12 H 0.068 0.932 13 C -0.565 4.565 14 H 0.107 0.893 15 C -0.118 4.118 16 N -0.511 5.511 17 Si 0.679 3.321 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.182 1.182 21 C -0.040 4.040 22 C -0.112 4.112 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.215 4.215 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.366 7.556 -7.786 13.114 hybrid contribution -0.539 -0.821 -0.504 1.104 sum -7.906 6.735 -8.290 13.289 Atomic orbital electron populations 1.22971 0.79224 1.03370 1.00954 1.86111 1.20633 1.27113 1.89068 1.18611 0.91578 0.83878 0.97482 1.20692 0.99284 0.91543 1.12938 1.20608 0.92015 0.98087 1.05238 1.18144 0.90141 0.84020 1.07414 1.86202 1.34278 1.11516 1.89904 1.22937 0.95775 0.87346 1.00531 1.17849 0.84034 0.89907 0.95180 1.86079 1.12949 1.35644 1.86061 1.19652 0.86235 0.81786 0.97441 0.93163 1.21205 1.51565 0.92396 0.91367 0.89293 1.24868 0.93634 0.97543 0.95734 1.69848 1.47185 1.11849 1.22236 0.87342 0.79704 0.81036 0.84064 1.18687 1.20651 1.18228 1.20163 0.97550 0.93710 0.92606 1.20938 0.93916 0.97195 0.99187 1.21068 0.95995 0.99332 0.97825 1.20908 0.99682 0.95737 0.99772 1.20900 0.94964 0.97609 1.00460 1.20899 0.96796 0.99503 0.97766 1.20538 0.92199 0.98298 1.10416 0.93062 0.88719 0.92896 0.85825 0.85300 0.93402 0.93275 0.88807 0.91988 0.85790 0.86800 0.87021 0.86894 0.87270 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.58 10.50 -19.66 -0.21 -5.79 16 3 C 0.13 2.44 6.68 -39.25 -0.26 2.18 16 4 C -0.23 -3.55 9.03 -39.41 -0.36 -3.91 16 5 C -0.14 -2.20 9.03 -39.48 -0.36 -2.56 16 6 C 0.05 0.90 6.70 -39.14 -0.26 0.64 16 7 O -0.30 -5.42 10.28 -34.56 -0.36 -5.78 16 8 C 0.03 0.35 9.81 101.05 0.99 1.34 16 9 C 0.18 3.92 6.62 -39.14 -0.26 3.66 16 10 O -0.29 -7.01 8.83 -34.29 -0.30 -7.31 16 11 C 0.20 4.96 1.54 -29.03 -0.04 4.92 16 12 H 0.05 1.23 3.36 -51.93 -0.17 1.06 16 13 C -0.53 -14.68 8.39 -34.44 -0.29 -14.97 16 14 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 15 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 16 N -0.88 -25.98 13.96 55.43 0.77 -25.21 16 17 Si 0.85 20.56 23.61 -169.99 -4.01 16.55 16 18 H -0.26 -6.09 6.77 56.52 0.38 -5.71 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -5.88 5.89 56.52 0.33 -5.55 16 21 C -0.04 -0.90 4.89 -104.62 -0.51 -1.41 16 22 C -0.09 -1.96 9.36 -39.58 -0.37 -2.33 16 23 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 24 C -0.14 -2.39 10.05 -39.58 -0.40 -2.79 16 25 C -0.12 -2.18 10.05 -39.58 -0.40 -2.57 16 26 C -0.13 -2.76 8.62 -39.58 -0.34 -3.10 16 27 C -0.20 -4.28 8.67 -39.31 -0.34 -4.62 16 28 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.12 1.53 6.28 -52.49 -0.33 1.20 16 32 H 0.13 1.55 6.29 -52.49 -0.33 1.22 16 33 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.12 2.59 7.73 -52.49 -0.41 2.19 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.11 2.27 5.27 -52.49 -0.28 1.99 16 42 H 0.15 3.65 4.76 -52.48 -0.25 3.40 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -32.08 342.86 -6.76 -38.84 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.12 Total: 7.93 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: -2.70 Total: -24.40 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.77 Total: -25.21 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.86 Total: -18.88 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.01 Total: 16.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.08 -6.76 -38.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227075722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.117 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds