Wall clock time and date at job start Tue Mar 31 2020 11:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35973 * 116.99815 * 2 1 4 4 C 1.38700 * 119.98345 * 359.72463 * 3 2 1 5 5 C 1.38233 * 120.08556 * 179.76575 * 4 3 2 6 6 C 1.38531 * 120.05671 * 0.51113 * 5 4 3 7 7 O 1.36074 * 120.02272 * 179.72640 * 6 5 4 8 8 C 1.42896 * 116.99725 * 0.02562 * 7 6 5 9 9 C 1.39135 * 119.96031 * 359.74539 * 6 5 4 10 10 O 1.35987 * 120.04247 * 179.97438 * 9 6 5 11 11 C 1.42905 * 116.99618 * 185.85197 * 10 9 6 12 12 H 1.08990 * 109.47351 * 33.81408 * 11 10 9 13 13 C 1.50707 * 109.47084 * 273.81163 * 11 10 9 14 14 H 1.07998 * 120.00121 * 330.61023 * 13 11 10 15 15 C 1.37876 * 119.99690 * 150.61829 * 13 11 10 16 16 N 1.31512 * 119.99744 * 180.21765 * 15 13 11 17 17 Si 1.86801 * 120.00112 * 0.20837 * 15 13 11 18 18 H 1.48496 * 109.47074 * 87.50399 * 17 15 13 19 19 H 1.48501 * 109.46657 * 207.50503 * 17 15 13 20 20 H 1.48499 * 109.47068 * 327.49783 * 17 15 13 21 21 C 1.50699 * 109.47001 * 153.81503 * 11 10 9 22 22 C 1.38235 * 120.00211 * 38.54528 * 21 11 10 23 23 C 1.38242 * 120.00312 * 179.79063 * 22 21 11 24 24 C 1.38236 * 119.99600 * 0.44250 * 23 22 21 25 25 C 1.38233 * 120.00163 * 359.81044 * 24 23 22 26 26 C 1.38237 * 120.00146 * 218.82023 * 21 11 10 27 27 C 1.38541 * 119.91080 * 359.97438 * 9 6 5 28 28 H 1.09007 * 109.47187 * 59.99708 * 1 2 3 29 29 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47234 * 299.99964 * 1 2 3 31 31 H 1.07992 * 119.95727 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.97160 * 180.25719 * 5 4 3 33 33 H 1.09002 * 109.47351 * 300.00195 * 8 7 6 34 34 H 1.09004 * 109.47426 * 60.00345 * 8 7 6 35 35 H 1.08997 * 109.46961 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00160 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.00019 * 359.97438 * 22 21 11 38 38 H 1.07998 * 120.00190 * 180.27455 * 23 22 21 39 39 H 1.07999 * 120.00053 * 179.83575 * 24 23 22 40 40 H 1.08002 * 120.00052 * 180.02562 * 25 24 23 41 41 H 1.07999 * 119.99893 * 359.97438 * 26 21 11 42 42 H 1.08005 * 120.02868 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2905 2.3745 -0.0058 5 6 1.9158 3.6073 -0.0009 6 6 3.2990 3.6838 -0.0009 7 8 3.9138 4.8977 -0.0017 8 6 3.0711 6.0517 -0.0020 9 6 4.0593 2.5185 -0.0005 10 8 5.4172 2.5916 -0.0011 11 6 6.1330 1.3615 -0.1304 12 1 5.5727 0.6807 -0.7712 13 6 6.3111 0.7384 1.2302 14 1 6.3726 1.3655 2.1074 15 6 6.3957 -0.6320 1.3551 16 7 6.5469 -1.1759 2.5429 17 14 6.2954 -1.7162 -0.1627 18 1 7.6520 -1.8813 -0.7437 19 1 5.7530 -3.0463 0.2141 20 1 5.4012 -1.0830 -1.1651 21 6 7.4844 1.6285 -0.7414 22 6 8.1925 2.7610 -0.3850 23 6 9.4342 3.0038 -0.9422 24 6 9.9636 2.1188 -1.8627 25 6 9.2532 0.9890 -2.2231 26 6 8.0135 0.7440 -1.6626 27 6 3.4311 1.2837 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2122 2.3169 -0.0107 32 1 1.3255 4.5117 -0.0012 33 1 2.4414 6.0416 -0.8917 34 1 2.4421 6.0425 0.8883 35 1 3.6867 6.9511 -0.0031 36 1 6.6060 -2.1401 2.6309 37 1 7.7771 3.4546 0.3311 38 1 9.9893 3.8862 -0.6604 39 1 10.9324 2.3098 -2.3001 40 1 9.6670 0.2974 -2.9420 41 1 7.4585 -0.1387 -1.9441 42 1 4.0194 0.3780 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227075722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:32 Heat of formation + Delta-G solvation = -68.105613 kcal Electronic energy + Delta-G solvation = -26306.164307 eV Core-core repulsion = 22603.195601 eV Total energy + Delta-G solvation = -3702.968706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68828 -40.39270 -39.85594 -39.00988 -36.74059 -35.09261 -33.04249 -31.78207 -31.42002 -30.35653 -29.11083 -28.10152 -27.68653 -25.21661 -23.60659 -23.40615 -22.72442 -21.67455 -19.82678 -19.35755 -18.57133 -18.17639 -17.49330 -17.35925 -16.90929 -16.61222 -16.37314 -16.05964 -15.71924 -15.58029 -15.32880 -15.12823 -14.96503 -14.78320 -14.25435 -13.99251 -13.72092 -13.61941 -13.39757 -13.24085 -13.01924 -12.80143 -12.53456 -12.40577 -12.37800 -12.05753 -11.92980 -11.73647 -11.57102 -11.40484 -11.14868 -10.93477 -9.75543 -9.56055 -9.47620 -8.49185 -8.47784 -6.55526 0.31100 0.48619 0.52594 0.58021 1.16958 1.20589 1.26990 2.13889 2.28519 2.44966 2.57838 2.73694 2.84690 3.04776 3.78734 3.97319 4.00695 4.12703 4.20518 4.25249 4.30532 4.31132 4.42525 4.43422 4.43874 4.48956 4.54758 4.60303 4.73482 4.74393 4.78187 4.80632 4.93476 5.10270 5.20079 5.21883 5.24384 5.31570 5.57885 5.62073 5.66831 5.81298 5.96337 6.19015 6.32255 6.43787 6.51638 6.78187 7.11553 8.68156 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.006010 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.270141 B = 4658.094176 C = 6399.644096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.345 6.345 3 C 0.119 3.881 4 C -0.205 4.205 5 C -0.124 4.124 6 C 0.040 3.960 7 O -0.336 6.336 8 C 0.018 3.982 9 C 0.132 3.868 10 O -0.313 6.313 11 C 0.216 3.784 12 H 0.044 0.956 13 C -0.528 4.528 14 H 0.036 0.964 15 C 0.038 3.962 16 N -0.926 5.926 17 Si 0.909 3.091 18 H -0.241 1.241 19 H -0.277 1.277 20 H -0.248 1.248 21 C -0.074 4.074 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.118 4.118 26 C -0.153 4.153 27 C -0.227 4.227 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.105 0.895 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 9.136 -10.587 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.259 6.259 3 C 0.074 3.926 4 C -0.223 4.223 5 C -0.142 4.142 6 C -0.005 4.005 7 O -0.251 6.251 8 C -0.077 4.077 9 C 0.085 3.915 10 O -0.227 6.227 11 C 0.161 3.839 12 H 0.061 0.939 13 C -0.566 4.566 14 H 0.054 0.946 15 C -0.162 4.162 16 N -0.564 5.564 17 Si 0.732 3.268 18 H -0.165 1.165 19 H -0.203 1.203 20 H -0.172 1.172 21 C -0.075 4.075 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.146 4.146 25 C -0.136 4.136 26 C -0.171 4.171 27 C -0.246 4.246 28 H 0.093 0.907 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.187 0.813 32 H 0.194 0.806 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.123 0.877 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.337 8.984 -10.458 16.112 hybrid contribution -0.369 -1.060 0.341 1.173 sum -8.706 7.924 -10.117 15.522 Atomic orbital electron populations 1.23395 0.76032 1.05520 1.02727 1.86075 1.23984 1.26918 1.88958 1.18703 0.90723 0.85598 0.97561 1.21178 1.01262 0.90132 1.09746 1.21141 0.90718 0.99935 1.02435 1.18330 0.91176 0.83741 1.07218 1.86162 1.36673 1.12382 1.89871 1.23343 0.96311 0.85672 1.02328 1.18341 0.83406 0.91646 0.98057 1.86018 1.14523 1.34988 1.87138 1.19361 0.87488 0.81985 0.95088 0.93872 1.21215 1.51220 0.92288 0.91831 0.94598 1.25599 0.93154 0.98753 0.98719 1.69987 1.49586 1.12283 1.24563 0.86435 0.80848 0.78823 0.80684 1.16530 1.20306 1.17227 1.20151 0.96818 0.95671 0.94830 1.20965 0.95723 0.96874 0.99967 1.21453 0.94502 1.00636 0.97057 1.21450 1.00930 0.94160 0.98090 1.21360 0.93496 0.98574 1.00144 1.21063 0.98484 0.99252 0.98314 1.20428 0.93976 0.97133 1.13091 0.90742 0.86705 0.91389 0.81270 0.80591 0.91125 0.91634 0.86898 0.91810 0.87646 0.83416 0.82313 0.83206 0.87652 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -12.15 10.50 -93.25 -0.98 -13.13 16 3 C 0.12 4.54 6.68 22.48 0.15 4.69 16 4 C -0.20 -5.89 9.03 22.38 0.20 -5.69 16 5 C -0.12 -3.55 9.03 22.34 0.20 -3.35 16 6 C 0.04 1.54 6.70 22.56 0.15 1.69 16 7 O -0.34 -11.97 10.28 -80.44 -0.83 -12.80 16 8 C 0.02 0.37 9.81 113.37 1.11 1.48 16 9 C 0.13 6.22 6.62 22.56 0.15 6.37 16 10 O -0.31 -16.27 8.83 -79.45 -0.70 -16.97 16 11 C 0.22 11.40 1.54 29.10 0.04 11.45 16 12 H 0.04 2.30 3.36 -2.39 -0.01 2.30 16 13 C -0.53 -32.14 8.39 25.60 0.21 -31.93 16 14 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 15 C 0.04 2.31 5.47 84.65 0.46 2.77 16 16 N -0.93 -58.79 13.96 21.45 0.30 -58.49 16 17 Si 0.91 44.70 23.61 68.60 1.62 46.32 16 18 H -0.24 -10.97 6.77 99.48 0.67 -10.30 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.25 -11.66 5.89 99.48 0.59 -11.07 16 21 C -0.07 -3.52 4.89 -19.87 -0.10 -3.62 16 22 C -0.12 -5.07 9.36 22.27 0.21 -4.86 16 23 C -0.12 -3.99 10.05 22.27 0.22 -3.77 16 24 C -0.13 -3.82 10.05 22.27 0.22 -3.59 16 25 C -0.12 -3.91 10.05 22.27 0.22 -3.69 16 26 C -0.15 -6.43 8.62 22.27 0.19 -6.23 16 27 C -0.23 -10.63 8.67 22.44 0.19 -10.44 16 28 H 0.07 1.21 7.65 -2.38 -0.02 1.19 16 29 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 31 H 0.17 3.29 6.28 -2.91 -0.02 3.27 16 32 H 0.18 3.32 6.29 -2.91 -0.02 3.30 16 33 H 0.07 1.16 7.66 -2.39 -0.02 1.14 16 34 H 0.07 1.16 7.66 -2.38 -0.02 1.14 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 37 H 0.11 4.80 7.73 -2.91 -0.02 4.78 16 38 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 39 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 41 H 0.11 4.39 5.27 -2.91 -0.02 4.37 16 42 H 0.12 6.17 4.76 -2.91 -0.01 6.16 16 Total: -1.00 -80.30 342.86 5.28 -75.03 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.89 Total: 27.29 kcal Atomic # 6 Polarization: -52.22 SS G_CDS: 4.97 Total: -47.25 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.30 Total: -58.49 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -2.51 Total: -42.90 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.62 Total: 46.32 kcal Total: -80.30 5.28 -75.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227075722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.921 kcal (2) G-P(sol) polarization free energy of solvation -80.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds