Wall clock time and date at job start Tue Mar 31 2020 11:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35931 * 116.99870 * 2 1 4 4 C 1.38627 * 120.03120 * 0.02562 * 3 2 1 5 5 C 1.38624 * 119.90234 * 179.97438 * 4 3 2 6 6 O 1.35910 * 120.01735 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00023 * 4.91747 * 6 5 4 8 8 H 1.09000 * 109.47115 * 36.27853 * 7 6 5 9 9 C 1.50696 * 109.47811 * 276.27292 * 7 6 5 10 10 H 1.07998 * 120.00331 * 124.70503 * 9 7 6 11 11 C 1.37873 * 119.99843 * 304.71345 * 9 7 6 12 12 N 1.31517 * 120.00497 * 2.23669 * 11 9 7 13 13 Si 1.86809 * 119.99857 * 182.24167 * 11 9 7 14 14 H 1.48496 * 109.46884 * 59.99976 * 13 11 9 15 15 H 1.48503 * 109.47023 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47173 * 299.99580 * 13 11 9 17 17 C 1.53007 * 109.47146 * 156.27021 * 7 6 5 18 18 N 1.46894 * 109.47470 * 293.74772 * 17 7 6 19 19 C 1.46903 * 109.47198 * 63.33866 * 18 17 7 20 20 C 1.46897 * 109.47389 * 183.33981 * 18 17 7 21 21 C 1.46901 * 109.47060 * 303.34521 * 18 17 7 22 22 C 1.38767 * 119.96503 * 0.26940 * 5 4 3 23 23 C 1.38177 * 120.06472 * 359.45183 * 22 5 4 24 24 C 1.38278 * 120.09189 * 0.54992 * 23 22 5 25 25 Cl 1.73596 * 119.98168 * 179.74283 * 24 23 22 26 26 H 1.08992 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46840 * 299.99926 * 1 2 3 28 28 H 1.09000 * 109.46943 * 59.99689 * 1 2 3 29 29 H 1.07996 * 120.04989 * 359.97438 * 4 3 2 30 30 H 0.97002 * 119.99205 * 4.41141 * 12 11 9 31 31 H 1.09004 * 109.46953 * 53.74634 * 17 7 6 32 32 H 1.08994 * 109.47183 * 173.74059 * 17 7 6 33 33 H 1.09009 * 109.46794 * 50.13353 * 19 18 17 34 34 H 1.09000 * 109.47501 * 170.13158 * 19 18 17 35 35 H 1.08998 * 109.47186 * 290.13088 * 19 18 17 36 36 H 1.09001 * 109.47042 * 60.00016 * 20 18 17 37 37 H 1.08997 * 109.46999 * 179.97438 * 20 18 17 38 38 H 1.08995 * 109.47204 * 299.99854 * 20 18 17 39 39 H 1.09002 * 109.47279 * 59.99623 * 21 18 17 40 40 H 1.08997 * 109.47019 * 179.97438 * 21 18 17 41 41 H 1.09001 * 109.46765 * 299.99613 * 21 18 17 42 42 H 1.08001 * 119.96781 * 179.70747 * 22 5 4 43 43 H 1.08001 * 119.95914 * 180.27798 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2917 2.3742 0.0005 5 6 1.9238 3.6079 0.0011 6 8 1.1864 4.7496 0.0021 7 6 -0.2311 4.6063 0.1118 8 1 -0.4618 3.7744 0.7772 9 6 -0.8158 4.3369 -1.2507 10 1 -1.4275 3.4616 -1.4125 11 6 -0.5698 5.2077 -2.2909 12 7 0.2109 6.2498 -2.1056 13 14 -1.3455 4.9076 -3.9636 14 1 -2.8246 4.9149 -3.8318 15 1 -0.9274 5.9794 -4.9026 16 1 -0.9015 3.5904 -4.4860 17 6 -0.8316 5.8944 0.6788 18 7 -0.3776 6.0781 2.0637 19 6 1.0815 6.2481 2.0822 20 6 -1.0168 7.2713 2.6344 21 6 -0.7432 4.8987 2.8594 22 6 3.3097 3.6766 -0.0046 23 6 4.0603 2.5165 0.0007 24 6 3.4325 1.2845 0.0001 25 17 4.3783 -0.1711 0.0000 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2131 2.3192 0.0005 30 1 0.6645 6.3710 -1.2568 31 1 -0.5085 6.7424 0.0750 32 1 -1.9193 5.8276 0.6588 33 1 1.3677 7.0099 1.3569 34 1 1.3987 6.5573 3.0781 35 1 1.5606 5.3034 1.8252 36 1 -2.0994 7.1451 2.6207 37 1 -0.6802 7.4073 3.6621 38 1 -0.7455 8.1464 2.0440 39 1 -0.2688 4.0133 2.4359 40 1 -0.4059 5.0348 3.8869 41 1 -1.8258 4.7725 2.8457 42 1 3.8022 4.6378 -0.0089 43 1 5.1389 2.5720 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230981402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:28 Heat of formation + Delta-G solvation = 54.294956 kcal Electronic energy + Delta-G solvation = -25993.932957 eV Core-core repulsion = 22377.902011 eV Total energy + Delta-G solvation = -3616.030946 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.68692 -41.28558 -39.67927 -37.86569 -36.82865 -34.96321 -31.90492 -31.23728 -30.70301 -30.52016 -30.28747 -28.27345 -27.60655 -25.27046 -23.97706 -23.16350 -22.26389 -19.92300 -19.71792 -18.88292 -18.51187 -18.28150 -17.60621 -17.27623 -16.83430 -16.71435 -15.95832 -15.42963 -15.37512 -15.11184 -15.00807 -14.91105 -14.46356 -14.38402 -14.30780 -14.24091 -13.99511 -13.96518 -13.80087 -13.46424 -13.24819 -12.82327 -12.68873 -12.29134 -12.22812 -12.08465 -11.83316 -11.47474 -11.42846 -11.32845 -10.39258 -10.17240 -9.50225 -8.71388 -8.09252 -6.13192 0.02912 0.38696 0.49608 1.51575 1.95163 2.03677 2.07294 2.19594 2.31796 2.32908 2.39927 2.45407 2.77487 2.93815 2.97525 3.05363 3.18743 3.28486 3.41325 3.42619 3.51201 3.55344 3.60970 3.79080 3.85569 3.89724 3.92925 4.04006 4.17912 4.25128 4.27870 4.37726 4.54063 4.56638 4.66098 4.70721 5.13055 5.32723 5.37760 5.68941 5.77218 6.24975 6.49414 6.66220 7.01507 7.68015 9.22279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.173 3.827 4 C -0.276 4.276 5 C 0.194 3.806 6 O -0.322 6.322 7 C 0.174 3.826 8 H 0.055 0.945 9 C -0.637 4.637 10 H 0.073 0.927 11 C 0.054 3.946 12 N -0.861 5.861 13 Si 1.057 2.943 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.278 1.278 17 C -0.005 4.005 18 N -0.273 5.273 19 C -0.045 4.045 20 C -0.043 4.043 21 C -0.046 4.046 22 C -0.190 4.190 23 C -0.037 4.037 24 C -0.113 4.113 25 Cl -0.064 7.064 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.149 0.851 30 H 0.278 0.722 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.136 0.864 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 5.156 16.728 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.126 3.874 4 C -0.295 4.295 5 C 0.147 3.853 6 O -0.237 6.237 7 C 0.120 3.880 8 H 0.072 0.928 9 C -0.673 4.673 10 H 0.091 0.909 11 C -0.158 4.158 12 N -0.494 5.494 13 Si 0.881 3.119 14 H -0.205 1.205 15 H -0.197 1.197 16 H -0.203 1.203 17 C -0.124 4.124 18 N 0.069 4.931 19 C -0.186 4.186 20 C -0.184 4.184 21 C -0.188 4.188 22 C -0.210 4.210 23 C -0.056 4.056 24 C -0.141 4.141 25 Cl -0.035 7.035 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.153 0.847 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.148 5.698 15.221 16.773 hybrid contribution -0.188 -0.763 1.280 1.502 sum -4.336 4.935 16.501 17.760 Atomic orbital electron populations 1.23126 0.77869 1.04255 1.01642 1.86172 1.21710 1.25906 1.87849 1.18481 0.90248 0.84819 0.93897 1.21338 1.01307 0.91076 1.15809 1.18549 0.90468 0.85090 0.91154 1.86135 1.21740 1.29568 1.86217 1.20582 0.77667 0.90481 0.99298 0.92763 1.22074 1.37679 1.14601 0.92940 0.90877 1.26004 0.94207 0.91593 1.04034 1.71007 1.23754 1.26816 1.27808 0.83624 0.76202 0.77568 0.74457 1.20488 1.19738 1.20345 1.25003 1.04221 1.06708 0.76448 1.46402 1.15660 1.14198 1.16881 1.24363 0.76863 1.10365 1.07017 1.24060 1.02666 0.88383 1.03328 1.24087 1.06718 0.89429 0.98576 1.20300 0.90679 0.98904 1.11068 1.20654 1.00267 0.89089 0.95550 1.20009 0.88637 0.88807 1.16637 1.98358 1.71629 1.36151 1.97407 0.87904 0.92949 0.91829 0.83341 0.90840 0.84545 0.84933 0.86198 0.87638 0.85061 0.86628 0.86865 0.86414 0.86453 0.86751 0.86426 0.84656 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 9.81 101.05 0.99 1.00 16 2 O -0.30 -1.15 9.95 -19.52 -0.19 -1.35 16 3 C 0.17 0.67 6.68 -39.22 -0.26 0.41 16 4 C -0.28 -0.72 7.67 -39.30 -0.30 -1.03 16 5 C 0.19 0.42 6.07 -39.24 -0.24 0.18 16 6 O -0.32 -0.26 4.84 -19.46 -0.09 -0.36 16 7 C 0.17 -0.08 1.36 -27.88 -0.04 -0.12 16 8 H 0.05 -0.14 4.11 -51.93 -0.21 -0.36 16 9 C -0.64 -3.70 7.88 -34.44 -0.27 -3.97 16 10 H 0.07 0.50 7.81 -52.49 -0.41 0.09 16 11 C 0.05 0.48 5.25 -17.82 -0.09 0.38 16 12 N -0.86 -8.24 12.89 55.43 0.71 -7.52 16 13 Si 1.06 8.93 29.90 -169.99 -5.08 3.85 16 14 H -0.28 -2.15 7.11 56.52 0.40 -1.75 16 15 H -0.27 -2.73 7.11 56.52 0.40 -2.33 16 16 H -0.28 -2.54 7.11 56.52 0.40 -2.14 16 17 C 0.00 0.03 3.50 -3.82 -0.01 0.01 16 18 N -0.27 3.02 0.05 -395.62 -0.02 3.00 16 19 C -0.05 0.45 7.10 60.07 0.43 0.88 16 20 C -0.04 0.58 8.00 60.06 0.48 1.06 16 21 C -0.05 0.57 7.57 60.07 0.45 1.02 16 22 C -0.19 -0.33 9.98 -39.41 -0.39 -0.72 16 23 C -0.04 -0.08 9.82 -39.59 -0.39 -0.47 16 24 C -0.11 -0.45 6.33 -39.35 -0.25 -0.70 16 25 Cl -0.06 -0.28 28.50 -51.86 -1.48 -1.76 16 26 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 27 H 0.05 -0.09 7.66 -51.93 -0.40 -0.49 16 28 H 0.06 0.05 7.66 -51.93 -0.40 -0.35 16 29 H 0.15 0.27 3.90 -52.49 -0.20 0.06 16 30 H 0.28 1.94 4.71 -40.82 -0.19 1.74 16 31 H 0.14 -0.36 5.89 -51.93 -0.31 -0.67 16 32 H 0.13 -0.84 8.11 -51.93 -0.42 -1.26 16 33 H 0.12 -1.04 7.95 -51.92 -0.41 -1.46 16 34 H 0.11 -1.36 7.99 -51.93 -0.42 -1.77 16 35 H 0.13 -1.00 5.21 -51.93 -0.27 -1.27 16 36 H 0.12 -1.64 8.13 -51.93 -0.42 -2.06 16 37 H 0.11 -1.73 8.07 -51.93 -0.42 -2.15 16 38 H 0.12 -1.52 8.14 -51.93 -0.42 -1.95 16 39 H 0.12 -1.20 5.88 -51.93 -0.31 -1.50 16 40 H 0.11 -1.65 8.14 -51.93 -0.42 -2.07 16 41 H 0.12 -1.55 8.14 -51.93 -0.42 -1.98 16 42 H 0.14 0.02 8.06 -52.49 -0.42 -0.40 16 43 H 0.14 0.04 8.06 -52.49 -0.42 -0.38 16 LS Contribution 346.24 15.07 5.22 5.22 Total: 0.00 -19.05 346.24 -6.95 -26.00 By element: Atomic # 1 Polarization: -18.89 SS G_CDS: -6.12 Total: -25.01 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 0.10 Total: -2.06 kcal Atomic # 7 Polarization: -5.22 SS G_CDS: 0.70 Total: -4.53 kcal Atomic # 8 Polarization: -1.42 SS G_CDS: -0.29 Total: -1.71 kcal Atomic # 14 Polarization: 8.93 SS G_CDS: -5.08 Total: 3.85 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.48 Total: -1.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -19.05 -6.95 -26.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230981402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.295 kcal (2) G-P(sol) polarization free energy of solvation -19.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds