Wall clock time and date at job start Tue Mar 31 2020 11:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35931 * 116.99870 * 2 1 4 4 C 1.38627 * 120.03120 * 0.02562 * 3 2 1 5 5 C 1.38624 * 119.90234 * 179.97438 * 4 3 2 6 6 O 1.35910 * 120.01735 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00023 * 4.91747 * 6 5 4 8 8 H 1.09000 * 109.47115 * 36.27853 * 7 6 5 9 9 C 1.50696 * 109.47811 * 276.27292 * 7 6 5 10 10 H 1.07998 * 120.00331 * 124.70503 * 9 7 6 11 11 C 1.37873 * 119.99843 * 304.71345 * 9 7 6 12 12 N 1.31517 * 120.00497 * 2.23669 * 11 9 7 13 13 Si 1.86809 * 119.99857 * 182.24167 * 11 9 7 14 14 H 1.48496 * 109.46884 * 59.99976 * 13 11 9 15 15 H 1.48503 * 109.47023 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47173 * 299.99580 * 13 11 9 17 17 C 1.53007 * 109.47146 * 156.27021 * 7 6 5 18 18 N 1.46894 * 109.47470 * 293.74772 * 17 7 6 19 19 C 1.46903 * 109.47198 * 63.33866 * 18 17 7 20 20 C 1.46897 * 109.47389 * 183.33981 * 18 17 7 21 21 C 1.46901 * 109.47060 * 303.34521 * 18 17 7 22 22 C 1.38767 * 119.96503 * 0.26940 * 5 4 3 23 23 C 1.38177 * 120.06472 * 359.45183 * 22 5 4 24 24 C 1.38278 * 120.09189 * 0.54992 * 23 22 5 25 25 Cl 1.73596 * 119.98168 * 179.74283 * 24 23 22 26 26 H 1.08992 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46840 * 299.99926 * 1 2 3 28 28 H 1.09000 * 109.46943 * 59.99689 * 1 2 3 29 29 H 1.07996 * 120.04989 * 359.97438 * 4 3 2 30 30 H 0.97002 * 119.99205 * 4.41141 * 12 11 9 31 31 H 1.09004 * 109.46953 * 53.74634 * 17 7 6 32 32 H 1.08994 * 109.47183 * 173.74059 * 17 7 6 33 33 H 1.09009 * 109.46794 * 50.13353 * 19 18 17 34 34 H 1.09000 * 109.47501 * 170.13158 * 19 18 17 35 35 H 1.08998 * 109.47186 * 290.13088 * 19 18 17 36 36 H 1.09001 * 109.47042 * 60.00016 * 20 18 17 37 37 H 1.08997 * 109.46999 * 179.97438 * 20 18 17 38 38 H 1.08995 * 109.47204 * 299.99854 * 20 18 17 39 39 H 1.09002 * 109.47279 * 59.99623 * 21 18 17 40 40 H 1.08997 * 109.47019 * 179.97438 * 21 18 17 41 41 H 1.09001 * 109.46765 * 299.99613 * 21 18 17 42 42 H 1.08001 * 119.96781 * 179.70747 * 22 5 4 43 43 H 1.08001 * 119.95914 * 180.27798 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2917 2.3742 0.0005 5 6 1.9238 3.6079 0.0011 6 8 1.1864 4.7496 0.0021 7 6 -0.2311 4.6063 0.1118 8 1 -0.4618 3.7744 0.7772 9 6 -0.8158 4.3369 -1.2507 10 1 -1.4275 3.4616 -1.4125 11 6 -0.5698 5.2077 -2.2909 12 7 0.2109 6.2498 -2.1056 13 14 -1.3455 4.9076 -3.9636 14 1 -2.8246 4.9149 -3.8318 15 1 -0.9274 5.9794 -4.9026 16 1 -0.9015 3.5904 -4.4860 17 6 -0.8316 5.8944 0.6788 18 7 -0.3776 6.0781 2.0637 19 6 1.0815 6.2481 2.0822 20 6 -1.0168 7.2713 2.6344 21 6 -0.7432 4.8987 2.8594 22 6 3.3097 3.6766 -0.0046 23 6 4.0603 2.5165 0.0007 24 6 3.4325 1.2845 0.0001 25 17 4.3783 -0.1711 0.0000 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2131 2.3192 0.0005 30 1 0.6645 6.3710 -1.2568 31 1 -0.5085 6.7424 0.0750 32 1 -1.9193 5.8276 0.6588 33 1 1.3677 7.0099 1.3569 34 1 1.3987 6.5573 3.0781 35 1 1.5606 5.3034 1.8252 36 1 -2.0994 7.1451 2.6207 37 1 -0.6802 7.4073 3.6621 38 1 -0.7455 8.1464 2.0440 39 1 -0.2688 4.0133 2.4359 40 1 -0.4059 5.0348 3.8869 41 1 -1.8258 4.7725 2.8457 42 1 3.8022 4.6378 -0.0089 43 1 5.1389 2.5720 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230981402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:28 Heat of formation + Delta-G solvation = 49.521017 kcal Electronic energy + Delta-G solvation = -25994.139971 eV Core-core repulsion = 22377.902011 eV Total energy + Delta-G solvation = -3616.237959 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.02422 -41.37042 -39.75187 -38.03906 -37.06423 -35.30957 -31.87835 -31.36838 -30.55473 -29.65137 -29.55010 -28.24386 -27.66523 -25.07040 -23.79903 -23.32828 -22.21831 -20.11209 -19.74255 -18.29696 -17.94134 -17.80432 -17.44885 -17.41649 -16.89045 -16.85497 -16.02536 -15.67564 -15.44880 -15.23730 -14.54110 -14.42005 -14.34390 -14.10818 -13.93821 -13.48703 -13.43644 -13.35285 -13.32807 -13.22423 -13.10345 -12.88995 -12.81792 -12.66853 -12.40108 -12.37093 -12.13021 -11.90630 -11.68973 -11.63675 -10.80233 -10.72304 -9.68270 -8.93786 -8.62032 -6.63280 0.20506 0.29964 0.84783 1.26572 1.47983 1.59050 1.69091 2.16512 2.23422 2.39680 2.59909 2.72205 2.93328 3.00070 3.17879 3.67653 3.78978 3.90758 3.93059 4.08767 4.11871 4.16703 4.20750 4.24212 4.28489 4.33111 4.37430 4.39050 4.47190 4.49398 4.59493 4.64683 4.67002 4.73565 4.79708 4.81900 4.99107 5.15859 5.24093 5.51703 5.54269 5.97424 6.14838 6.47003 6.56278 7.17593 8.72459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.324 6.324 3 C 0.160 3.840 4 C -0.279 4.279 5 C 0.190 3.810 6 O -0.315 6.315 7 C 0.169 3.831 8 H 0.079 0.921 9 C -0.635 4.635 10 H 0.056 0.944 11 C 0.030 3.970 12 N -0.903 5.903 13 Si 1.067 2.933 14 H -0.267 1.267 15 H -0.299 1.299 16 H -0.293 1.293 17 C 0.015 3.985 18 N -0.258 5.258 19 C -0.047 4.047 20 C -0.045 4.045 21 C -0.053 4.053 22 C -0.191 4.191 23 C -0.036 4.036 24 C -0.134 4.134 25 Cl -0.075 7.075 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.154 0.846 30 H 0.288 0.712 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.144 0.856 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.151 0.849 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 5.998 19.773 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.237 6.237 3 C 0.113 3.887 4 C -0.298 4.298 5 C 0.142 3.858 6 O -0.229 6.229 7 C 0.115 3.885 8 H 0.097 0.903 9 C -0.673 4.673 10 H 0.075 0.925 11 C -0.179 4.179 12 N -0.539 5.539 13 Si 0.896 3.104 14 H -0.192 1.192 15 H -0.225 1.225 16 H -0.220 1.220 17 C -0.107 4.107 18 N 0.084 4.916 19 C -0.189 4.189 20 C -0.185 4.185 21 C -0.194 4.194 22 C -0.210 4.210 23 C -0.054 4.054 24 C -0.161 4.161 25 Cl -0.046 7.046 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.171 0.829 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.165 0.835 33 H 0.122 0.878 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.162 0.838 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.165 0.835 41 H 0.151 0.849 42 H 0.169 0.831 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.837 6.534 18.273 20.000 hybrid contribution -0.008 -1.070 0.390 1.139 sum -4.845 5.464 18.664 20.041 Atomic orbital electron populations 1.23335 0.76344 1.05559 1.02167 1.86141 1.23416 1.26162 1.87949 1.18662 0.90503 0.85214 0.94320 1.21379 1.01476 0.90973 1.16021 1.18737 0.90981 0.85313 0.90726 1.86177 1.21949 1.28731 1.86005 1.20674 0.76449 0.94306 0.97084 0.90324 1.22284 1.36369 1.12921 0.95712 0.92536 1.25952 0.94996 0.92585 1.04396 1.70948 1.25905 1.27941 1.29121 0.83472 0.76891 0.75550 0.74523 1.19242 1.22535 1.22003 1.24212 1.04347 1.02594 0.79527 1.46004 1.15382 1.16117 1.14069 1.24353 0.77099 1.08559 1.08858 1.24271 1.03270 0.86509 1.04456 1.24299 1.07690 0.87769 0.99628 1.20507 0.90628 0.99449 1.10440 1.20878 1.01204 0.88593 0.94769 1.20249 0.88859 0.88978 1.18042 1.98343 1.71825 1.36916 1.97533 0.86289 0.90777 0.92891 0.82907 0.89736 0.86943 0.83466 0.87762 0.83799 0.87427 0.85434 0.83827 0.87081 0.88592 0.83520 0.84891 0.83092 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 -2.77 9.95 -92.77 -0.92 -3.69 16 3 C 0.16 1.40 6.68 22.51 0.15 1.55 16 4 C -0.28 -1.65 7.67 22.45 0.17 -1.47 16 5 C 0.19 0.89 6.07 22.49 0.14 1.03 16 6 O -0.31 -0.62 4.84 -92.54 -0.45 -1.07 16 7 C 0.17 -0.15 1.36 29.85 0.04 -0.11 16 8 H 0.08 -0.46 4.11 -2.39 -0.01 -0.47 16 9 C -0.64 -8.06 7.88 25.60 0.20 -7.86 16 10 H 0.06 0.86 7.81 -2.91 -0.02 0.83 16 11 C 0.03 0.58 5.25 84.65 0.44 1.02 16 12 N -0.90 -18.89 12.89 21.45 0.28 -18.62 16 13 Si 1.07 20.54 29.90 68.60 2.05 22.59 16 14 H -0.27 -4.44 7.11 99.48 0.71 -3.74 16 15 H -0.30 -6.95 7.11 99.48 0.71 -6.24 16 16 H -0.29 -6.19 7.11 99.48 0.71 -5.48 16 17 C 0.01 -0.17 3.50 86.31 0.30 0.14 16 18 N -0.26 6.22 0.05 ******* -0.07 6.15 16 19 C -0.05 1.02 7.10 127.69 0.91 1.93 16 20 C -0.04 1.34 8.00 127.69 1.02 2.36 16 21 C -0.05 1.44 7.57 127.69 0.97 2.41 16 22 C -0.19 -0.69 9.98 22.38 0.22 -0.47 16 23 C -0.04 -0.17 9.82 22.26 0.22 0.05 16 24 C -0.13 -1.17 6.33 22.42 0.14 -1.03 16 25 Cl -0.07 -0.72 28.50 -2.72 -0.08 -0.80 16 26 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.07 -0.29 7.66 -2.39 -0.02 -0.31 16 28 H 0.05 0.15 7.66 -2.39 -0.02 0.13 16 29 H 0.15 0.63 3.90 -2.91 -0.01 0.62 16 30 H 0.29 4.43 4.71 -92.71 -0.44 3.99 16 31 H 0.11 -0.56 5.89 -2.38 -0.01 -0.57 16 32 H 0.15 -2.07 8.11 -2.39 -0.02 -2.09 16 33 H 0.10 -1.84 7.95 -2.38 -0.02 -1.86 16 34 H 0.14 -4.18 7.99 -2.39 -0.02 -4.20 16 35 H 0.11 -1.72 5.21 -2.39 -0.01 -1.73 16 36 H 0.13 -4.02 8.13 -2.39 -0.02 -4.04 16 37 H 0.14 -5.03 8.07 -2.39 -0.02 -5.05 16 38 H 0.11 -3.06 8.14 -2.39 -0.02 -3.08 16 39 H 0.10 -2.11 5.88 -2.39 -0.01 -2.12 16 40 H 0.15 -4.83 8.14 -2.39 -0.02 -4.85 16 41 H 0.13 -3.95 8.14 -2.39 -0.02 -3.97 16 42 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 43 H 0.16 0.08 8.06 -2.91 -0.02 0.06 16 Total: 0.00 -47.52 346.24 8.19 -39.33 By element: Atomic # 1 Polarization: -45.91 SS G_CDS: 1.34 Total: -44.57 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.04 Total: 0.67 kcal Atomic # 7 Polarization: -12.67 SS G_CDS: 0.21 Total: -12.47 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -1.37 Total: -4.77 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: 2.05 Total: 22.59 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -47.52 8.19 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230981402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.852 kcal (2) G-P(sol) polarization free energy of solvation -47.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds