Wall clock time and date at job start Tue Mar 31 2020 11:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35972 * 117.00293 * 2 1 4 4 C 1.38660 * 119.94964 * 359.97438 * 3 2 1 5 5 C 1.38002 * 120.12660 * 179.97438 * 4 3 2 6 6 C 1.39383 * 120.01797 * 359.77475 * 5 4 3 7 7 C 1.48324 * 120.04852 * 180.27623 * 6 5 4 8 8 C 1.38599 * 120.09574 * 129.95177 * 7 6 5 9 9 C 1.40615 * 119.56563 * 179.79768 * 8 7 6 10 10 C 1.41242 * 120.11812 * 180.22837 * 9 8 7 11 11 H 1.07997 * 120.00210 * 204.75733 * 10 9 8 12 12 C 1.39858 * 119.99940 * 24.75459 * 10 9 8 13 13 N 1.30905 * 120.00013 * 17.82132 * 12 10 9 14 14 Si 1.86800 * 120.00081 * 197.82612 * 12 10 9 15 15 H 1.48502 * 109.46917 * 60.00252 * 14 12 10 16 16 H 1.48503 * 109.46780 * 179.97438 * 14 12 10 17 17 H 1.48488 * 109.47192 * 299.99880 * 14 12 10 18 18 C 1.40915 * 119.76685 * 0.47480 * 9 8 7 19 19 C 1.36426 * 120.18616 * 359.75191 * 18 9 8 20 20 C 1.39135 * 120.43813 * 0.02562 * 19 18 9 21 21 O 1.35617 * 119.88350 * 179.97438 * 20 19 18 22 22 C 1.42903 * 116.99792 * 0.02562 * 21 20 19 23 23 C 1.39382 * 119.90094 * 0.50237 * 6 5 4 24 24 C 1.38330 * 119.87593 * 359.46915 * 23 6 5 25 25 O 1.35991 * 120.01070 * 180.25189 * 24 23 6 26 26 C 1.42902 * 117.00296 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47707 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47352 * 299.99955 * 1 2 3 29 29 H 1.08996 * 109.46898 * 59.99758 * 1 2 3 30 30 H 1.08008 * 119.94023 * 0.02645 * 4 3 2 31 31 H 1.07996 * 119.99015 * 180.02562 * 5 4 3 32 32 H 1.07992 * 120.21544 * 0.02562 * 8 7 6 33 33 H 0.96992 * 120.00219 * 179.97438 * 13 12 10 34 34 H 1.07995 * 119.90638 * 179.77220 * 18 9 8 35 35 H 1.07998 * 119.77963 * 179.97438 * 19 18 9 36 36 H 1.09003 * 109.46885 * 180.02562 * 22 21 20 37 37 H 1.09007 * 109.46971 * 299.99608 * 22 21 20 38 38 H 1.08998 * 109.47422 * 59.99809 * 22 21 20 39 39 H 1.07998 * 120.05820 * 179.75217 * 23 6 5 40 40 H 1.08999 * 109.46848 * 179.97438 * 26 25 24 41 41 H 1.08998 * 109.47031 * 299.99700 * 26 25 24 42 42 H 1.09003 * 109.46977 * 59.99640 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2902 2.3738 -0.0005 5 6 1.9130 3.6053 0.0000 6 6 3.3046 3.6829 0.0058 7 6 3.9747 5.0061 0.0126 8 6 4.9719 5.2755 0.9367 9 6 5.6026 6.5322 0.9303 10 6 6.6236 6.8175 1.8637 11 1 6.8304 7.8403 2.1420 12 6 7.3668 5.7754 2.4274 13 7 7.3747 4.5957 1.8601 14 14 8.3480 6.0670 3.9900 15 1 7.4301 6.4837 5.0804 16 1 9.0420 4.8132 4.3798 17 1 9.3515 7.1353 3.7522 18 6 5.2089 7.5079 -0.0071 19 6 4.2229 7.2339 -0.9093 20 6 3.5965 5.9915 -0.9133 21 8 2.6173 5.7314 -1.8148 22 6 2.2821 6.7777 -2.7285 23 6 4.0657 2.5152 0.0005 24 6 3.4370 1.2830 0.0006 25 8 4.1769 0.1419 0.0006 26 6 5.5982 0.2903 0.0011 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 0.2117 2.3152 -0.0005 31 1 1.3219 4.5091 0.0000 32 1 5.2651 4.5238 1.6545 33 1 7.8904 3.8731 2.2509 34 1 5.6893 8.4751 -0.0116 35 1 3.9260 7.9866 -1.6245 36 1 1.4867 6.4393 -3.3925 37 1 1.9431 7.6515 -2.1719 38 1 3.1605 7.0407 -3.3179 39 1 5.1441 2.5724 0.0010 40 1 6.0662 -0.6942 0.0015 41 1 5.9065 0.8392 -0.8887 42 1 5.9059 0.8389 0.8913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239616067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:23 Heat of formation + Delta-G solvation = -66.029546 kcal Electronic energy + Delta-G solvation = -25988.394363 eV Core-core repulsion = 22285.515682 eV Total energy + Delta-G solvation = -3702.878681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13990 -38.86468 -38.08720 -36.67712 -36.04809 -33.37638 -31.39397 -29.91704 -29.15744 -28.48386 -27.00629 -26.84434 -26.49821 -24.64804 -22.33583 -21.75892 -20.61537 -20.07161 -18.19247 -17.36788 -16.88699 -16.41215 -16.19394 -15.74972 -15.30586 -14.95052 -14.85326 -14.77970 -14.36973 -14.24622 -14.02791 -13.19606 -13.02258 -12.88831 -12.67790 -12.26703 -12.07170 -11.86411 -11.79491 -11.59150 -11.26137 -11.11481 -10.98250 -10.90376 -10.83380 -10.70895 -10.70116 -10.50190 -9.97887 -9.86628 -9.47509 -9.06778 -8.32475 -7.76780 -7.23859 -6.95908 -6.72073 -4.31017 1.70524 1.88256 2.74653 2.85551 3.05843 3.07977 3.17955 3.54879 3.65328 3.91914 4.21644 4.30740 4.58350 5.10849 5.24902 5.25204 5.34376 5.49238 5.54293 5.55238 5.57193 5.58848 5.62096 5.68212 5.78705 5.85025 5.91378 5.96298 6.06705 6.16985 6.34794 6.67835 6.75724 6.88497 6.99646 7.07292 7.12975 7.20808 7.37238 7.39554 7.45608 7.70402 7.92072 7.96193 8.12042 8.39076 8.57032 8.83995 8.89841 10.17106 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.005057 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.344422 B = 5535.821392 C = 7453.263576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.078 3.922 4 C -0.176 4.176 5 C -0.096 4.096 6 C 0.001 3.999 7 C -0.065 4.065 8 C -0.115 4.115 9 C 0.086 3.914 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.800 5.800 14 Si 0.906 3.094 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.187 4.187 19 C -0.170 4.170 20 C 0.013 3.987 21 O -0.323 6.323 22 C 0.037 3.963 23 C -0.158 4.158 24 C 0.094 3.906 25 O -0.314 6.314 26 C 0.027 3.973 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.280 0.720 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.171 -5.188 -3.473 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.033 3.967 4 C -0.195 4.195 5 C -0.114 4.114 6 C 0.000 4.000 7 C -0.065 4.065 8 C -0.134 4.134 9 C 0.084 3.916 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.140 4.140 13 N -0.426 5.426 14 Si 0.731 3.269 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.207 4.207 19 C -0.188 4.188 20 C -0.031 4.031 21 O -0.238 6.238 22 C -0.059 4.059 23 C -0.176 4.176 24 C 0.049 3.951 25 O -0.228 6.228 26 C -0.068 4.068 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.159 0.841 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.134 -5.990 -3.471 10.681 hybrid contribution 0.618 0.819 0.511 1.147 sum -7.516 -5.170 -2.960 9.591 Atomic orbital electron populations 1.22953 0.79495 1.03170 1.00985 1.86111 1.20265 1.26534 1.89742 1.18166 0.88985 0.84758 1.04785 1.20870 0.99202 0.91541 1.07857 1.20899 0.93898 0.96532 1.00094 1.18570 0.92267 0.92302 0.96845 1.17855 0.99668 0.90705 0.98304 1.21337 0.94253 0.99050 0.98783 1.17491 0.91839 0.91113 0.91161 1.19404 1.14647 0.94224 1.21039 0.90519 1.25830 0.96062 0.94565 0.97513 1.69804 1.33988 1.02806 1.36003 0.86396 0.79827 0.78594 0.82094 1.18877 1.20365 1.19103 1.20641 1.01475 1.00255 0.98320 1.20357 1.00947 0.95344 1.02196 1.18520 0.95011 0.94374 0.95183 1.85892 1.53497 1.39610 1.44840 1.22723 0.99683 0.91230 0.92279 1.21318 1.00918 0.90045 1.05355 1.18098 0.87986 0.85895 1.03156 1.86078 1.18653 1.28516 1.89548 1.23028 0.78720 1.03114 1.01984 0.88854 0.93064 0.93071 0.85470 0.85714 0.85251 0.90904 0.88593 0.88402 0.90039 0.93961 0.93963 0.84074 0.88824 0.92706 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.09 10.27 -34.31 -0.35 -5.44 16 3 C 0.08 1.39 6.70 -39.05 -0.26 1.13 16 4 C -0.18 -2.91 9.02 -39.51 -0.36 -3.27 16 5 C -0.10 -1.79 8.76 -39.24 -0.34 -2.14 16 6 C 0.00 0.01 5.27 -104.90 -0.55 -0.54 16 7 C -0.06 -1.50 5.48 -104.80 -0.57 -2.08 16 8 C -0.11 -2.88 8.14 -38.55 -0.31 -3.20 16 9 C 0.09 2.22 5.57 -106.85 -0.60 1.62 16 10 C -0.46 -11.88 9.04 -37.84 -0.34 -12.23 16 11 H 0.08 1.89 7.91 -52.49 -0.41 1.48 16 12 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 13 N -0.80 -19.78 10.97 55.54 0.61 -19.17 16 14 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 15 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 16 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 C -0.19 -4.42 9.72 -39.22 -0.38 -4.81 16 19 C -0.17 -3.70 8.95 -39.90 -0.36 -4.05 16 20 C 0.01 0.28 6.62 -38.44 -0.25 0.03 16 21 O -0.32 -6.40 8.79 -18.55 -0.16 -6.57 16 22 C 0.04 0.55 9.80 101.05 0.99 1.54 16 23 C -0.16 -3.18 8.49 -39.12 -0.33 -3.51 16 24 C 0.09 1.79 6.69 -39.17 -0.26 1.53 16 25 O -0.31 -5.65 10.27 -34.37 -0.35 -6.00 16 26 C 0.03 0.39 9.81 101.05 0.99 1.38 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 30 H 0.13 1.68 6.28 -52.48 -0.33 1.35 16 31 H 0.12 2.25 7.65 -52.49 -0.40 1.85 16 32 H 0.13 3.36 6.15 -52.49 -0.32 3.04 16 33 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 34 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 35 H 0.10 1.84 6.26 -52.49 -0.33 1.51 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.59 7.65 -51.93 -0.40 0.20 16 38 H 0.04 0.61 7.65 -51.93 -0.40 0.22 16 39 H 0.14 2.88 6.27 -52.49 -0.33 2.55 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 42 H 0.06 0.88 7.66 -51.93 -0.40 0.48 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -29.13 351.45 -7.37 -36.50 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.34 Total: 7.61 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -2.04 Total: -25.50 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.61 Total: -19.17 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.87 Total: -18.01 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.13 -7.37 -36.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239616067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.525 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds