Wall clock time and date at job start Tue Mar 31 2020 11:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35989 * 116.99962 * 2 1 4 4 C 1.38278 * 119.97436 * 359.97438 * 3 2 1 5 5 C 1.39672 * 119.94522 * 180.02562 * 4 3 2 6 6 C 1.47875 * 120.05086 * 179.97438 * 5 4 3 7 7 C 1.40002 * 119.88680 * 179.97438 * 6 5 4 8 8 C 1.36208 * 120.11474 * 180.02562 * 7 6 5 9 9 C 1.40951 * 119.88111 * 0.25578 * 8 7 6 10 10 C 1.40991 * 120.10762 * 179.74921 * 9 8 7 11 11 H 1.07996 * 120.00531 * 24.58521 * 10 9 8 12 12 C 1.39968 * 119.99691 * 204.57583 * 10 9 8 13 13 N 1.30827 * 120.00077 * 17.82439 * 12 10 9 14 14 Si 1.86799 * 120.00160 * 197.82341 * 12 10 9 15 15 H 1.48506 * 109.47062 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47298 * 120.00291 * 14 12 10 17 17 H 1.48507 * 109.47118 * 240.00270 * 14 12 10 18 18 C 1.40956 * 119.77796 * 359.45088 * 9 8 7 19 19 C 1.36210 * 119.87967 * 0.57122 * 18 9 8 20 20 C 1.39676 * 119.89710 * 0.27685 * 5 4 3 21 21 C 1.38275 * 119.94904 * 359.46866 * 20 5 4 22 22 O 1.35991 * 119.97512 * 180.25492 * 21 20 5 23 23 C 1.42901 * 117.00171 * 0.27468 * 22 21 20 24 24 C 1.39243 * 119.96979 * 180.02562 * 3 2 1 25 25 O 1.35975 * 119.94929 * 0.02562 * 24 3 2 26 26 C 1.42905 * 116.99710 * 90.00876 * 25 24 3 27 27 H 1.09001 * 109.47363 * 60.00346 * 1 2 3 28 28 H 1.09004 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47383 * 299.99839 * 1 2 3 30 30 H 1.07998 * 120.02485 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.94091 * 0.02562 * 7 6 5 32 32 H 1.08000 * 120.05640 * 179.97438 * 8 7 6 33 33 H 0.97001 * 120.00092 * 179.97438 * 13 12 10 34 34 H 1.07997 * 120.06207 * 180.29686 * 18 9 8 35 35 H 1.07996 * 119.93957 * 179.72764 * 19 18 9 36 36 H 1.08002 * 120.02415 * 179.71952 * 20 5 4 37 37 H 1.08997 * 109.47250 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47000 * 300.00395 * 23 22 21 39 39 H 1.09006 * 109.46941 * 60.00098 * 23 22 21 40 40 H 1.09005 * 109.46421 * 299.99207 * 26 25 24 41 41 H 1.08991 * 109.47384 * 59.99194 * 26 25 24 42 42 H 1.09003 * 109.46854 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2927 2.3710 -0.0005 5 6 1.9274 3.6152 -0.0011 6 6 1.1238 4.8565 -0.0022 7 6 1.7636 6.1018 -0.0022 8 6 1.0279 7.2481 -0.0027 9 6 -0.3800 7.1790 0.0022 10 6 -1.1462 8.3625 0.0070 11 1 -0.7271 9.2787 -0.3820 12 6 -2.4500 8.3499 0.5158 13 7 -2.8404 7.3709 1.2907 14 14 -3.6328 9.7312 0.0883 15 1 -2.9518 10.7097 -0.7971 16 1 -4.8167 9.1704 -0.6109 17 1 -4.0698 10.4118 1.3338 18 6 -1.0192 5.9227 -0.0041 19 6 -0.2743 4.7823 -0.0031 20 6 3.3224 3.6851 -0.0069 21 6 4.0718 2.5231 -0.0011 22 8 5.4301 2.5905 -0.0015 23 6 6.0149 3.8944 -0.0021 24 6 3.4369 1.2838 -0.0005 25 8 4.1759 0.1424 -0.0016 26 6 4.5280 -0.4012 -1.2754 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2142 2.3145 -0.0014 31 1 2.8423 6.1536 -0.0018 32 1 1.5224 8.2082 -0.0023 33 1 -3.7439 7.3623 1.6436 34 1 -2.0976 5.8644 -0.0053 35 1 -0.7631 3.8193 -0.0035 36 1 3.8153 4.6461 -0.0119 37 1 7.1012 3.8054 -0.0020 38 1 5.6944 4.4359 -0.8921 39 1 5.6950 4.4365 0.8879 40 1 3.6215 -0.6387 -1.8322 41 1 5.1156 0.3287 -1.8321 42 1 5.1150 -1.3087 -1.1334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239640555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:41 Heat of formation + Delta-G solvation = -68.888442 kcal Electronic energy + Delta-G solvation = -25495.905981 eV Core-core repulsion = 21792.903329 eV Total energy + Delta-G solvation = -3703.002652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41108 -38.75204 -38.00278 -37.38779 -35.85209 -33.86753 -31.09117 -30.07753 -29.06130 -28.84861 -27.58140 -26.93529 -26.50711 -24.71147 -22.27034 -22.08231 -20.47809 -20.25436 -18.26107 -17.63891 -16.97454 -16.69509 -16.11675 -15.96131 -15.55952 -15.32830 -14.91828 -14.77661 -14.64264 -14.32471 -13.69002 -13.47848 -13.38710 -12.66171 -12.64117 -12.42016 -12.39762 -11.96188 -11.70243 -11.62013 -11.52525 -11.35802 -11.33663 -11.21580 -11.06300 -10.83640 -10.50110 -10.21302 -9.89547 -9.68252 -9.50688 -9.35406 -8.23813 -7.84243 -7.75384 -7.16148 -7.00653 -4.56778 1.35241 1.79926 2.63155 2.91887 2.96906 2.97391 3.01836 3.08372 3.70976 3.85600 3.90593 4.27359 4.55743 5.13398 5.17695 5.27527 5.30707 5.37450 5.40927 5.48731 5.51970 5.52918 5.56936 5.57724 5.64674 5.66502 5.76177 5.94138 6.08652 6.14827 6.51841 6.59711 6.68849 6.72768 6.79937 6.85259 7.05141 7.21394 7.33798 7.38940 7.51852 7.69590 7.81250 7.95507 8.02094 8.06292 8.36478 8.58654 8.71164 9.85147 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.003257 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.316875 B = 8593.810381 C = 9850.004311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.157 3.843 4 C -0.258 4.258 5 C 0.098 3.902 6 C -0.215 4.215 7 C -0.054 4.054 8 C -0.232 4.232 9 C 0.122 3.878 10 C -0.440 4.440 11 H 0.084 0.916 12 C 0.072 3.928 13 N -0.773 5.773 14 Si 0.913 3.087 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.271 1.271 18 C -0.174 4.174 19 C -0.067 4.067 20 C -0.259 4.259 21 C 0.157 3.843 22 O -0.310 6.310 23 C 0.026 3.974 24 C -0.018 4.018 25 O -0.312 6.312 26 C 0.035 3.965 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.286 0.714 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -7.819 -3.317 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.111 3.889 4 C -0.277 4.277 5 C 0.098 3.902 6 C -0.216 4.216 7 C -0.072 4.072 8 C -0.251 4.251 9 C 0.119 3.881 10 C -0.467 4.467 11 H 0.103 0.897 12 C -0.148 4.148 13 N -0.396 5.396 14 Si 0.736 3.264 15 H -0.181 1.181 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.193 4.193 19 C -0.086 4.086 20 C -0.278 4.278 21 C 0.111 3.889 22 O -0.223 6.223 23 C -0.069 4.069 24 C -0.063 4.063 25 O -0.228 6.228 26 C -0.060 4.060 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.110 0.890 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.617 -8.339 -3.010 11.063 hybrid contribution -0.957 1.113 -0.274 1.493 sum 5.660 -7.226 -3.284 9.749 Atomic orbital electron populations 1.23064 0.78606 1.03427 1.01810 1.86074 1.21067 1.26562 1.88551 1.18808 0.90413 0.84541 0.95097 1.21093 1.00050 0.90899 1.15622 1.18552 0.91414 0.92472 0.87795 1.17995 0.92502 0.90336 1.20810 1.20390 0.97190 0.92274 0.97379 1.20686 0.94116 0.96299 1.13996 1.17770 0.91149 0.93208 0.86001 1.19800 0.96955 0.96737 1.33254 0.89749 1.26076 0.98994 0.97255 0.92517 1.69830 1.19268 1.30105 1.20352 0.86171 0.79793 0.80852 0.79542 1.18087 1.19369 1.19656 1.20992 0.99659 0.91496 1.07176 1.20511 0.92539 0.97162 0.98349 1.21071 0.94197 0.96662 1.15883 1.18797 0.82254 0.92670 0.95171 1.86078 1.17151 1.30449 1.88582 1.23056 0.98506 0.83582 1.01728 1.16770 0.86118 0.84201 1.19241 1.86137 1.70553 1.38161 1.27981 1.22913 0.99129 0.98037 0.85969 0.92583 0.88542 0.92410 0.84984 0.88986 0.88582 0.90292 0.86298 0.89041 0.85070 0.88556 0.92614 0.92477 0.94225 0.94225 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.31 -5.03 10.27 -34.42 -0.35 -5.38 16 3 C 0.16 2.83 6.69 -39.19 -0.26 2.57 16 4 C -0.26 -4.73 8.41 -39.03 -0.33 -5.06 16 5 C 0.10 1.94 5.88 -104.88 -0.62 1.32 16 6 C -0.22 -4.67 5.90 -104.63 -0.62 -5.29 16 7 C -0.05 -1.16 9.36 -39.65 -0.37 -1.53 16 8 C -0.23 -5.33 9.73 -39.29 -0.38 -5.71 16 9 C 0.12 3.03 5.57 -106.80 -0.60 2.44 16 10 C -0.44 -10.76 9.03 -37.89 -0.34 -11.11 16 11 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 12 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16 13 N -0.77 -18.42 10.96 55.55 0.61 -17.81 16 14 Si 0.91 17.08 29.60 -169.99 -5.03 12.04 16 15 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 16 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 17 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 18 C -0.17 -4.24 8.63 -39.28 -0.34 -4.58 16 19 C -0.07 -1.50 9.36 -39.65 -0.37 -1.87 16 20 C -0.26 -4.68 8.41 -39.03 -0.33 -5.01 16 21 C 0.16 2.80 6.69 -39.19 -0.26 2.54 16 22 O -0.31 -4.95 10.27 -34.42 -0.35 -5.30 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 C -0.02 -0.34 5.76 -38.83 -0.22 -0.56 16 25 O -0.31 -5.55 9.97 -45.03 -0.45 -6.00 16 26 C 0.03 0.47 11.13 101.05 1.12 1.60 16 27 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 30 H 0.13 2.25 4.39 -52.49 -0.23 2.02 16 31 H 0.09 1.72 6.17 -52.49 -0.32 1.39 16 32 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 34 H 0.12 2.96 6.17 -52.49 -0.32 2.63 16 35 H 0.09 1.83 6.17 -52.49 -0.32 1.51 16 36 H 0.13 2.16 4.39 -52.49 -0.23 1.93 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.61 7.64 -51.93 -0.40 0.21 16 39 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -28.35 350.56 -7.42 -35.77 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.11 Total: 7.47 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -2.02 Total: -26.08 kcal Atomic # 7 Polarization: -18.42 SS G_CDS: 0.61 Total: -17.81 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -1.16 Total: -16.68 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.35 -7.42 -35.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239640555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.118 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds