Wall clock time and date at job start Tue Mar 31 2020 11:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35796 * 117.00231 * 2 1 4 4 C 1.38881 * 119.84043 * 179.97438 * 3 2 1 5 5 C 1.38317 * 120.16306 * 179.97438 * 4 3 2 6 6 O 1.35782 * 120.08091 * 179.97438 * 5 4 3 7 7 C 1.42899 * 117.00104 * 359.97438 * 6 5 4 8 8 C 1.40247 * 119.83697 * 0.25751 * 5 4 3 9 9 C 1.47608 * 120.16391 * 179.74554 * 8 5 4 10 10 C 1.40132 * 119.89524 * 294.72940 * 9 8 5 11 11 C 1.36143 * 120.10299 * 179.75965 * 10 9 8 12 12 C 1.40997 * 119.89266 * 0.52772 * 11 10 9 13 13 C 1.40942 * 120.10104 * 179.69707 * 12 11 10 14 14 H 1.07999 * 119.99696 * 204.76641 * 13 12 11 15 15 C 1.39916 * 120.00030 * 24.76380 * 13 12 11 16 16 N 1.30868 * 119.99884 * 17.99491 * 15 13 12 17 17 Si 1.86795 * 120.00068 * 197.98990 * 15 13 12 18 18 H 1.48504 * 109.47062 * 90.00290 * 17 15 13 19 19 H 1.48501 * 109.47284 * 210.00242 * 17 15 13 20 20 H 1.48502 * 109.47219 * 330.00119 * 17 15 13 21 21 C 1.40990 * 119.79416 * 359.72466 * 12 11 10 22 22 C 1.36146 * 119.89656 * 359.97438 * 21 12 11 23 23 C 1.40249 * 119.67254 * 359.49272 * 8 5 4 24 24 O 1.35779 * 120.07927 * 180.22792 * 23 8 5 25 25 C 1.42897 * 117.00281 * 180.27771 * 24 23 8 26 26 C 1.38309 * 119.84080 * 0.50524 * 23 8 5 27 27 H 1.09002 * 109.47448 * 300.00480 * 1 2 3 28 28 H 1.09006 * 109.46851 * 60.00287 * 1 2 3 29 29 H 1.09005 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.92036 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.47101 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46810 * 60.00657 * 7 6 5 33 33 H 1.08996 * 109.47487 * 300.00842 * 7 6 5 34 34 H 1.07997 * 119.95011 * 359.97438 * 10 9 8 35 35 H 1.08001 * 120.06003 * 180.25342 * 11 10 9 36 36 H 0.97002 * 119.99885 * 179.97438 * 16 15 13 37 37 H 1.08005 * 120.04486 * 180.02562 * 21 12 11 38 38 H 1.07994 * 119.94621 * 180.02562 * 22 21 12 39 39 H 1.09001 * 109.46986 * 300.00058 * 25 24 23 40 40 H 1.09005 * 109.47324 * 59.99789 * 25 24 23 41 41 H 1.09002 * 109.47336 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.92416 * 179.76704 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 3.4326 1.2787 0.0005 5 6 4.0675 2.5075 0.0000 6 8 5.4238 2.5728 0.0011 7 6 6.1330 1.3323 0.0033 8 6 3.3070 3.6859 0.0044 9 6 3.9771 5.0011 0.0095 10 6 4.7468 5.3885 1.1146 11 6 5.3707 6.5985 1.1217 12 6 5.2323 7.4670 0.0196 13 6 5.8710 8.7234 0.0251 14 1 5.4795 9.5308 -0.5759 15 6 7.0121 8.9246 0.8093 16 7 7.6911 7.8973 1.2524 17 14 7.5666 10.6596 1.2237 18 1 6.9236 11.0958 2.4892 19 1 9.0427 10.6823 1.3850 20 1 7.1745 11.5800 0.1263 21 6 4.4524 7.0750 -1.0876 22 6 3.8373 5.8604 -1.0884 23 6 1.9067 3.6085 -0.0015 24 8 1.1624 4.7441 -0.0020 25 6 -0.2581 4.5887 -0.0020 26 6 1.2857 2.3726 -0.0010 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 4.0170 0.3704 0.0005 31 1 7.2055 1.5269 0.0035 32 1 5.8681 0.7607 -0.8863 33 1 5.8665 0.7629 0.8936 34 1 4.8482 4.7247 1.9604 35 1 5.9671 6.8947 1.9720 36 1 8.4824 8.0368 1.7957 37 1 4.3440 7.7369 -1.9341 38 1 3.2401 5.5592 -1.9363 39 1 -0.5634 4.0381 -0.8918 40 1 -0.5635 4.0388 0.8882 41 1 -0.7311 5.5708 -0.0029 42 1 0.2074 2.3114 -0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239647203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:51 Heat of formation + Delta-G solvation = -81.584792 kcal Electronic energy + Delta-G solvation = -25840.778473 eV Core-core repulsion = 22137.225266 eV Total energy + Delta-G solvation = -3703.553207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73105 -39.98848 -39.85102 -39.10923 -36.59409 -35.50054 -32.74516 -31.31397 -30.77353 -30.21877 -28.88622 -28.08411 -27.63221 -26.29176 -23.62201 -22.88624 -22.44345 -21.75178 -19.98840 -19.19892 -18.13743 -17.46919 -17.35433 -17.20646 -17.04519 -16.86571 -16.37845 -16.35027 -15.72953 -15.58099 -15.53956 -15.14113 -14.62241 -14.11169 -13.91314 -13.81644 -13.52228 -13.37465 -13.28364 -12.95902 -12.76501 -12.52050 -12.44521 -12.40592 -12.35555 -12.33173 -12.07895 -11.90113 -11.40087 -11.25842 -11.03188 -10.86282 -9.39137 -9.29791 -9.19904 -8.68629 -8.58561 -6.25928 0.33978 0.43762 1.02808 1.27963 1.38957 1.52879 1.55438 2.01286 2.22809 2.34167 2.65664 2.80949 2.83660 3.78047 3.96629 4.01023 4.07954 4.19126 4.26853 4.35213 4.39452 4.41447 4.41769 4.44689 4.50911 4.53732 4.59918 4.71965 4.73980 4.77038 4.91520 5.10532 5.17662 5.19732 5.29376 5.40037 5.45221 5.53784 5.78015 6.03160 6.15413 6.24259 6.31074 6.42166 6.51380 6.62467 6.74035 6.97189 7.10384 8.36163 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.003632 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.480832 B = 7708.028556 C = 8763.980207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.192 3.808 4 C -0.281 4.281 5 C 0.193 3.807 6 O -0.323 6.323 7 C 0.017 3.983 8 C -0.146 4.146 9 C -0.145 4.145 10 C -0.080 4.080 11 C -0.188 4.188 12 C 0.084 3.916 13 C -0.498 4.498 14 H 0.075 0.925 15 C 0.034 3.966 16 N -0.823 5.823 17 Si 0.985 3.015 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.243 4.243 22 C -0.067 4.067 23 C 0.195 3.805 24 O -0.323 6.323 25 C 0.016 3.984 26 C -0.324 4.324 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.288 0.712 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 -14.629 -0.719 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.146 3.854 4 C -0.300 4.300 5 C 0.146 3.854 6 O -0.236 6.236 7 C -0.077 4.077 8 C -0.147 4.147 9 C -0.146 4.146 10 C -0.098 4.098 11 C -0.208 4.208 12 C 0.082 3.918 13 C -0.527 4.527 14 H 0.094 0.906 15 C -0.181 4.181 16 N -0.449 5.449 17 Si 0.805 3.195 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.181 1.181 21 C -0.262 4.262 22 C -0.085 4.085 23 C 0.148 3.852 24 O -0.236 6.236 25 C -0.078 4.078 26 C -0.343 4.343 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.192 -14.534 -0.600 18.980 hybrid contribution 0.196 0.557 0.186 0.619 sum -11.996 -13.977 -0.413 18.424 Atomic orbital electron populations 1.23419 0.76170 1.05886 1.02399 1.86018 1.23731 1.25888 1.87981 1.18389 0.91092 0.84173 0.91793 1.20277 0.93085 0.96966 1.19719 1.18516 0.82808 0.91861 0.92225 1.86221 1.15258 1.34550 1.87586 1.23375 0.97370 0.84353 1.02583 1.17448 0.89871 0.91849 1.15562 1.17822 1.06029 0.94288 0.96457 1.20513 0.96978 0.95556 0.96751 1.20853 1.04503 0.96154 0.99246 1.17947 0.90224 0.93193 0.90412 1.19760 1.10112 0.97741 1.25118 0.90637 1.26812 0.95182 1.03147 0.92976 1.69932 1.14040 1.34255 1.26652 0.85174 0.77825 0.76838 0.79646 1.18684 1.19121 1.18127 1.20781 1.08451 0.98186 0.98828 1.20422 0.97894 0.93681 0.96546 1.18522 0.89250 0.85492 0.91894 1.86192 1.20740 1.29073 1.87554 1.23403 0.76630 1.05325 1.02481 1.21195 1.01559 0.90380 1.21185 0.91693 0.91626 0.85661 0.82935 0.87189 0.91129 0.91187 0.89338 0.88310 0.90166 0.88621 0.88233 0.91076 0.91288 0.86878 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.80 113.37 1.11 1.31 16 2 O -0.32 -7.28 10.49 -91.26 -0.96 -8.23 16 3 C 0.19 5.32 6.69 22.58 0.15 5.48 16 4 C -0.28 -8.55 8.96 22.44 0.20 -8.35 16 5 C 0.19 7.23 6.66 22.78 0.15 7.38 16 6 O -0.32 -12.39 9.71 -91.10 -0.88 -13.28 16 7 C 0.02 0.44 9.81 113.37 1.11 1.55 16 8 C -0.15 -6.10 5.33 -19.83 -0.11 -6.21 16 9 C -0.14 -7.16 4.59 -19.89 -0.09 -7.25 16 10 C -0.08 -4.22 9.39 22.24 0.21 -4.01 16 11 C -0.19 -10.85 8.62 22.46 0.19 -10.65 16 12 C 0.08 4.94 5.57 -21.27 -0.12 4.82 16 13 C -0.50 -28.45 9.02 23.34 0.21 -28.24 16 14 H 0.08 4.15 7.91 -2.91 -0.02 4.12 16 15 C 0.03 1.78 5.13 85.24 0.44 2.22 16 16 N -0.82 -45.27 10.96 21.82 0.24 -45.03 16 17 Si 0.98 39.80 29.60 68.60 2.03 41.83 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 19 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 21 C -0.24 -13.16 9.73 22.46 0.22 -12.94 16 22 C -0.07 -3.38 9.36 22.24 0.21 -3.17 16 23 C 0.20 6.92 6.66 22.78 0.15 7.07 16 24 O -0.32 -11.17 9.69 -91.08 -0.88 -12.06 16 25 C 0.02 0.33 9.81 113.37 1.11 1.44 16 26 C -0.32 -8.88 8.01 22.44 0.18 -8.70 16 27 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 28 H 0.07 0.73 7.65 -2.38 -0.02 0.71 16 29 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.15 3.85 6.28 -2.91 -0.02 3.83 16 31 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 33 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 34 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.10 5.89 6.16 -2.91 -0.02 5.87 16 36 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 37 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 40 H 0.07 1.17 7.66 -2.38 -0.02 1.16 16 41 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.16 3.20 4.48 -2.91 -0.01 3.18 16 Total: -1.00 -73.03 352.57 5.92 -67.11 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 1.04 Total: 27.92 kcal Atomic # 6 Polarization: -63.60 SS G_CDS: 5.33 Total: -58.26 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.24 Total: -45.03 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -2.72 Total: -33.57 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -73.03 5.92 -67.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239647203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.474 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds