Wall clock time and date at job start Tue Mar 31 2020 11:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35858 * 116.99585 * 2 1 4 4 C 1.38775 * 119.87081 * 179.97438 * 3 2 1 5 5 C 1.38450 * 120.12361 * 180.02562 * 4 3 2 6 6 O 1.35833 * 120.06103 * 180.02562 * 5 4 3 7 7 C 1.42894 * 117.00456 * 359.97327 * 6 5 4 8 8 C 1.39816 * 119.87185 * 359.97438 * 5 4 3 9 9 C 1.48251 * 120.12087 * 180.02562 * 8 5 4 10 10 C 1.39809 * 120.00601 * 65.00003 * 9 8 5 11 11 C 1.38369 * 120.36985 * 179.97438 * 10 9 8 12 12 C 1.37733 * 120.38467 * 359.97438 * 11 10 9 13 13 C 1.40778 * 120.00516 * 359.97438 * 12 11 10 14 14 C 1.41418 * 120.18188 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00421 * 335.17738 * 14 13 12 16 16 C 1.39927 * 119.99960 * 154.90554 * 14 13 12 17 17 N 1.30834 * 119.99740 * 342.94511 * 16 14 13 18 18 Si 1.86799 * 120.00061 * 162.94885 * 16 14 13 19 19 H 1.48494 * 109.47266 * 60.00090 * 18 16 14 20 20 H 1.48501 * 109.46979 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47045 * 299.99907 * 18 16 14 22 22 C 1.38802 * 120.00625 * 245.21728 * 9 8 5 23 23 C 1.39805 * 119.75539 * 0.27776 * 8 5 4 24 24 O 1.35838 * 120.06727 * 179.72097 * 23 8 5 25 25 C 1.42900 * 117.00377 * 179.97438 * 24 23 8 26 26 C 1.38458 * 119.87402 * 359.42626 * 23 8 5 27 27 H 1.09006 * 109.46996 * 60.00304 * 1 2 3 28 28 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47211 * 299.99950 * 1 2 3 30 30 H 1.07995 * 119.93921 * 0.02825 * 4 3 2 31 31 H 1.09004 * 109.46750 * 300.00684 * 7 6 5 32 32 H 1.08997 * 109.47081 * 60.00202 * 7 6 5 33 33 H 1.08998 * 109.47228 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.82055 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.80730 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.99518 * 179.97438 * 12 11 10 37 37 H 0.96997 * 119.99791 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.19496 * 0.03440 * 22 9 8 39 39 H 1.08996 * 109.47419 * 300.01025 * 25 24 23 40 40 H 1.09001 * 109.46229 * 60.00352 * 25 24 23 41 41 H 1.09000 * 109.47224 * 179.97438 * 25 24 23 42 42 H 1.07996 * 119.94017 * 180.32212 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 3.4317 1.2802 0.0005 5 6 4.0656 2.5110 0.0011 6 8 5.4223 2.5777 0.0011 7 6 6.1328 1.3379 0.0011 8 6 3.3066 3.6852 0.0005 9 6 3.9796 5.0061 0.0005 10 6 4.7534 5.3966 -1.0965 11 6 5.3844 6.6280 -1.1047 12 6 5.2571 7.4832 -0.0326 13 6 4.4810 7.1067 1.0800 14 6 4.3472 7.9821 2.1826 15 1 5.1078 8.7233 2.3790 16 6 3.2267 7.8917 3.0158 17 7 2.1596 7.2527 2.6099 18 14 3.2544 8.6834 4.7075 19 1 3.4798 10.1443 4.5667 20 1 1.9549 8.4467 5.3861 21 1 4.3503 8.0889 5.5143 22 6 3.8454 5.8536 1.0916 23 6 1.9106 3.6090 0.0053 24 8 1.1670 4.7458 0.0106 25 6 -0.2537 4.5918 0.0147 26 6 1.2874 2.3726 -0.0014 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0170 0.3725 0.0005 31 1 5.8675 0.7672 0.8911 32 1 5.8677 0.7672 -0.8889 33 1 7.2051 1.5336 0.0016 34 1 4.8592 4.7334 -1.9424 35 1 5.9796 6.9206 -1.9571 36 1 5.7527 8.4427 -0.0454 37 1 1.3830 7.1898 3.1876 38 1 3.2518 5.5537 1.9425 39 1 -0.5624 4.0439 -0.8755 40 1 -0.5565 4.0396 0.9044 41 1 -0.7256 5.5743 0.0191 42 1 0.2091 2.3126 -0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239647990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:55 Heat of formation + Delta-G solvation = -80.803816 kcal Electronic energy + Delta-G solvation = -26364.420516 eV Core-core repulsion = 22660.901174 eV Total energy + Delta-G solvation = -3703.519342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76925 -39.99797 -39.84135 -38.99557 -36.58096 -35.43474 -32.96588 -31.33496 -30.76845 -29.65804 -28.85328 -28.08189 -27.15992 -26.94445 -23.84662 -22.87485 -22.47619 -21.57487 -20.01772 -19.04205 -18.14833 -17.37441 -17.35398 -17.20489 -17.01281 -16.47851 -16.42241 -16.36630 -16.25947 -15.57464 -15.48974 -15.10202 -14.68839 -14.24605 -13.93870 -13.52096 -13.42409 -13.39271 -13.28492 -12.82983 -12.72796 -12.50658 -12.49694 -12.37103 -12.32693 -12.28776 -12.12741 -12.07435 -11.40617 -11.18655 -10.94933 -10.90466 -9.37815 -9.20751 -9.20044 -8.71107 -8.45890 -6.24856 0.31191 0.41790 1.07690 1.24013 1.38165 1.49082 1.57366 1.99999 2.24693 2.31977 2.65621 2.83240 2.84400 3.78671 3.92094 3.98885 4.02035 4.17506 4.26865 4.31974 4.36831 4.39350 4.42676 4.43494 4.55602 4.57110 4.69804 4.71922 4.76477 4.78917 4.79247 5.11006 5.16807 5.21738 5.29690 5.38847 5.42378 5.58932 5.77885 6.09652 6.18758 6.20266 6.30723 6.46229 6.48704 6.59443 6.80223 7.03347 7.13613 8.43499 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.005006 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.954786 B = 5591.564869 C = 6655.839765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.320 6.320 3 C 0.197 3.803 4 C -0.283 4.283 5 C 0.203 3.797 6 O -0.320 6.320 7 C 0.016 3.984 8 C -0.170 4.170 9 C -0.011 4.011 10 C -0.218 4.218 11 C -0.098 4.098 12 C -0.247 4.247 13 C 0.078 3.922 14 C -0.508 4.508 15 H 0.071 0.929 16 C 0.036 3.964 17 N -0.814 5.814 18 Si 0.977 3.023 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.264 1.264 22 C -0.152 4.152 23 C 0.201 3.799 24 O -0.315 6.315 25 C 0.022 3.978 26 C -0.330 4.330 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.061 0.939 30 H 0.159 0.841 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 -15.110 -3.494 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.151 3.849 4 C -0.302 4.302 5 C 0.156 3.844 6 O -0.233 6.233 7 C -0.078 4.078 8 C -0.172 4.172 9 C -0.011 4.011 10 C -0.237 4.237 11 C -0.116 4.116 12 C -0.267 4.267 13 C 0.076 3.924 14 C -0.538 4.538 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.439 5.439 18 Si 0.798 3.202 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.189 1.189 22 C -0.172 4.172 23 C 0.154 3.846 24 O -0.227 6.227 25 C -0.072 4.072 26 C -0.349 4.349 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.176 0.824 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.599 -14.996 -3.439 16.373 hybrid contribution -0.429 0.490 0.687 0.947 sum -6.028 -14.506 -2.752 15.948 Atomic orbital electron populations 1.23419 0.76214 1.05941 1.02317 1.86029 1.23681 1.25676 1.87938 1.18356 0.91243 0.84037 0.91297 1.20283 0.92945 0.97016 1.19953 1.18282 0.82974 0.91439 0.91707 1.86205 1.14772 1.34782 1.87539 1.23421 0.97501 0.84302 1.02592 1.17592 0.90286 0.92438 1.16890 1.18244 0.96576 0.91855 0.94458 1.20575 1.05942 0.98129 0.99026 1.20727 0.99179 0.94165 0.97511 1.21174 1.09500 1.00136 0.95870 1.17888 0.90535 0.91864 0.92131 1.19723 1.06296 1.17176 1.10601 0.91042 1.26680 0.93680 0.94738 1.02785 1.69956 1.02745 1.34104 1.37118 0.85352 0.78549 0.79384 0.76961 1.18386 1.19099 1.18884 1.21160 1.04305 0.93845 0.97885 1.18539 0.89495 0.85672 0.90883 1.86335 1.20524 1.28799 1.87053 1.23295 0.77040 1.04754 1.02145 1.21202 1.01579 0.90458 1.21682 0.91622 0.85397 0.92007 0.82373 0.91525 0.90934 0.86511 0.88248 0.86365 0.88677 0.90606 0.88840 0.90772 0.91720 0.87820 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -7.77 10.49 -91.95 -0.96 -8.74 16 3 C 0.20 5.92 6.68 22.52 0.15 6.07 16 4 C -0.28 -8.93 8.96 22.45 0.20 -8.73 16 5 C 0.20 7.83 6.65 22.70 0.15 7.98 16 6 O -0.32 -11.86 9.69 -91.68 -0.89 -12.75 16 7 C 0.02 0.37 9.81 113.37 1.11 1.48 16 8 C -0.17 -7.70 5.33 -19.85 -0.11 -7.80 16 9 C -0.01 -0.58 4.56 -20.10 -0.09 -0.67 16 10 C -0.22 -10.79 9.45 22.68 0.21 -10.57 16 11 C -0.10 -4.78 10.01 22.18 0.22 -4.56 16 12 C -0.25 -13.36 9.79 22.77 0.22 -13.14 16 13 C 0.08 4.59 5.56 -21.32 -0.12 4.47 16 14 C -0.51 -29.45 9.05 23.46 0.21 -29.23 16 15 H 0.07 3.99 7.90 -2.91 -0.02 3.97 16 16 C 0.04 1.94 5.15 85.25 0.44 2.38 16 17 N -0.81 -44.71 10.97 21.82 0.24 -44.47 16 18 Si 0.98 40.43 29.59 68.60 2.03 42.46 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 C -0.15 -8.83 8.07 22.96 0.19 -8.65 16 23 C 0.20 8.17 6.65 22.70 0.15 8.32 16 24 O -0.32 -13.34 9.68 -91.74 -0.89 -14.23 16 25 C 0.02 0.62 9.81 113.37 1.11 1.74 16 26 C -0.33 -10.36 8.01 22.45 0.18 -10.18 16 27 H 0.07 0.88 7.65 -2.38 -0.02 0.86 16 28 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 0.89 7.65 -2.39 -0.02 0.87 16 30 H 0.16 4.02 6.28 -2.91 -0.02 4.00 16 31 H 0.07 1.37 7.66 -2.39 -0.02 1.36 16 32 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 33 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 36 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 38 H 0.09 5.74 6.20 -2.91 -0.02 5.72 16 39 H 0.07 1.65 7.65 -2.39 -0.02 1.63 16 40 H 0.06 1.60 7.67 -2.39 -0.02 1.58 16 41 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.16 3.87 4.49 -2.91 -0.01 3.86 16 Total: -1.00 -73.89 352.80 5.92 -67.97 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 1.04 Total: 29.50 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 5.35 Total: -59.75 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.24 Total: -44.47 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -2.74 Total: -35.71 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -73.89 5.92 -67.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239647990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.836 kcal (2) G-P(sol) polarization free energy of solvation -73.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds