Wall clock time and date at job start Tue Mar 31 2020 11:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35784 * 116.99921 * 2 1 4 4 C 1.38895 * 119.83382 * 359.72705 * 3 2 1 5 5 C 1.38303 * 120.16955 * 179.72449 * 4 3 2 6 6 O 1.35779 * 120.08786 * 180.27375 * 5 4 3 7 7 C 1.42899 * 116.99782 * 0.27326 * 6 5 4 8 8 C 1.40300 * 119.82763 * 0.54933 * 5 4 3 9 9 C 1.47488 * 120.16275 * 179.75197 * 8 5 4 10 10 C 1.39408 * 120.35392 * 269.69541 * 9 8 5 11 11 C 1.37912 * 119.96576 * 179.70479 * 10 9 8 12 12 C 1.39029 * 120.70566 * 0.58023 * 11 10 9 13 13 C 1.36363 * 120.72698 * 359.71881 * 12 11 10 14 14 C 1.40770 * 120.00321 * 359.97438 * 13 12 11 15 15 C 1.40776 * 120.34978 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00412 * 154.10167 * 15 14 13 17 17 C 1.40000 * 119.99736 * 334.10414 * 15 14 13 18 18 N 1.30828 * 120.00035 * 343.60729 * 17 15 14 19 19 Si 1.86803 * 119.99911 * 163.60789 * 17 15 14 20 20 H 1.48497 * 109.47213 * 60.00272 * 19 17 15 21 21 H 1.48504 * 109.46752 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46944 * 300.00098 * 19 17 15 23 23 C 1.40293 * 119.67018 * 359.72036 * 8 5 4 24 24 O 1.35773 * 120.08619 * 180.02562 * 23 8 5 25 25 C 1.42903 * 117.00193 * 179.97438 * 24 23 8 26 26 C 1.38301 * 119.83062 * 0.02562 * 23 8 5 27 27 H 1.09005 * 109.46943 * 60.00316 * 1 2 3 28 28 H 1.08996 * 109.47259 * 299.99795 * 1 2 3 29 29 H 1.09007 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.91900 * 359.97438 * 4 3 2 31 31 H 1.08999 * 109.46991 * 299.99983 * 7 6 5 32 32 H 1.08996 * 109.47334 * 60.00364 * 7 6 5 33 33 H 1.08999 * 109.46905 * 180.02562 * 7 6 5 34 34 H 1.08007 * 120.01531 * 359.97438 * 10 9 8 35 35 H 1.07999 * 119.64831 * 180.30213 * 11 10 9 36 36 H 1.07991 * 119.63929 * 179.74605 * 12 11 10 37 37 H 1.08007 * 120.00173 * 179.97438 * 13 12 11 38 38 H 0.96998 * 119.99977 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.46858 * 300.00297 * 25 24 23 40 40 H 1.09001 * 109.47158 * 60.00110 * 25 24 23 41 41 H 1.09004 * 109.46979 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.92045 * 180.02562 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2856 2.3725 -0.0057 5 6 1.9062 3.6085 0.0000 6 8 1.1617 4.7440 0.0000 7 6 -0.2588 4.5884 -0.0001 8 6 3.3070 3.6860 -0.0001 9 6 3.9766 5.0001 0.0005 10 6 4.3020 5.6255 -1.2022 11 6 4.9225 6.8571 -1.1924 12 6 5.2407 7.4822 0.0080 13 6 4.9410 6.8935 1.2009 14 6 4.3019 5.6395 1.2262 15 6 3.9896 5.0249 2.4536 16 1 3.1725 4.3211 2.5127 17 6 4.7382 5.3260 3.5977 18 7 5.9029 5.9105 3.4822 19 14 4.0741 4.8931 5.2891 20 1 3.8600 3.4263 5.3764 21 1 5.0503 5.3130 6.3265 22 1 2.7843 5.5956 5.5091 23 6 4.0678 2.5072 0.0000 24 8 5.4239 2.5723 0.0005 25 6 6.1331 1.3317 0.0011 26 6 3.4327 1.2786 -0.0004 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2073 2.3113 -0.0106 31 1 -0.5640 4.0380 -0.8900 32 1 -0.5640 4.0381 0.8899 33 1 -0.7318 5.5704 -0.0005 34 1 4.0643 5.1476 -2.1412 35 1 5.1678 7.3391 -2.1272 36 1 5.7302 8.4447 -0.0044 37 1 5.1939 7.3894 2.1265 38 1 6.4214 6.1195 4.2748 39 1 5.8669 0.7615 0.8912 40 1 5.8676 0.7610 -0.8888 41 1 7.2056 1.5262 0.0010 42 1 4.0169 0.3702 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239649005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:00 Heat of formation + Delta-G solvation = -60.162252 kcal Electronic energy + Delta-G solvation = -26797.639219 eV Core-core repulsion = 23095.014963 eV Total energy + Delta-G solvation = -3702.624256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.28301 -38.60059 -38.43243 -37.17023 -35.03426 -33.51041 -31.28472 -29.41017 -29.33449 -28.16654 -27.68892 -26.94349 -25.91541 -24.91954 -22.21917 -21.27411 -20.69129 -19.75818 -18.63068 -17.10257 -16.79580 -16.02899 -15.80576 -15.78150 -15.65133 -15.20443 -15.00859 -14.96533 -14.41920 -14.28779 -13.88114 -13.26609 -13.01780 -12.58645 -12.47227 -12.27417 -12.20582 -11.84769 -11.49165 -11.31470 -11.25440 -11.10063 -11.08966 -11.04993 -10.97765 -10.71210 -10.41953 -10.32043 -9.66200 -9.43591 -9.26329 -9.05212 -7.73675 -7.23098 -7.21205 -7.15244 -6.62505 -4.19462 1.93620 1.95866 2.89699 3.10827 3.14405 3.16330 3.31771 3.38362 3.54098 4.01838 4.19083 4.23907 4.77636 5.05225 5.15182 5.25371 5.26366 5.38798 5.41973 5.44903 5.48461 5.55488 5.61917 5.69468 5.69705 5.84101 5.93558 5.98631 6.39356 6.50460 6.61456 6.66313 6.84457 6.93259 7.00460 7.20027 7.40305 7.46161 7.54237 7.75964 7.93366 7.97585 8.11949 8.23206 8.28567 8.45290 8.77988 9.04037 9.15537 10.30765 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.005988 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.505369 B = 4674.904862 C = 5032.439001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.179 3.821 4 C -0.334 4.334 5 C 0.198 3.802 6 O -0.289 6.289 7 C 0.028 3.972 8 C -0.073 4.073 9 C -0.150 4.150 10 C -0.068 4.068 11 C -0.245 4.245 12 C -0.105 4.105 13 C -0.160 4.160 14 C 0.138 3.862 15 C -0.446 4.446 16 H 0.073 0.927 17 C 0.078 3.922 18 N -0.793 5.793 19 Si 0.900 3.100 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.264 1.264 23 C 0.208 3.792 24 O -0.282 6.282 25 C 0.027 3.973 26 C -0.280 4.280 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -8.723 -4.413 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.134 3.866 4 C -0.354 4.354 5 C 0.151 3.849 6 O -0.200 6.200 7 C -0.068 4.068 8 C -0.074 4.074 9 C -0.151 4.151 10 C -0.087 4.087 11 C -0.264 4.264 12 C -0.123 4.123 13 C -0.180 4.180 14 C 0.135 3.865 15 C -0.476 4.476 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.419 5.419 19 Si 0.724 3.276 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.189 1.189 23 C 0.161 3.839 24 O -0.193 6.193 25 C -0.069 4.069 26 C -0.299 4.299 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.145 0.855 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.581 -8.465 -4.257 12.135 hybrid contribution -0.717 -0.603 0.893 1.294 sum -8.299 -9.068 -3.364 12.744 Atomic orbital electron populations 1.22977 0.78986 1.03276 1.01291 1.85987 1.20948 1.27424 1.88849 1.18240 0.91135 0.83125 0.94104 1.20927 0.99719 0.91871 1.22847 1.18486 0.90041 0.84107 0.92223 1.86228 1.17592 1.28535 1.87681 1.22998 0.79894 1.03339 1.00523 1.17080 0.88037 0.92666 1.09644 1.18051 1.10679 0.93240 0.93160 1.20462 0.98245 0.94742 0.95222 1.20165 1.11751 0.98490 0.95991 1.20406 1.00319 0.98131 0.93473 1.20980 1.04523 0.95979 0.96480 1.17468 0.87978 0.89962 0.91068 1.19331 1.13751 1.22122 0.92403 0.90875 1.25868 0.93755 0.93276 1.01018 1.69831 1.08801 1.31615 1.31613 0.86505 0.79816 0.79907 0.81329 1.19119 1.20367 1.18896 1.18400 0.82675 0.91372 0.91468 1.86278 1.14825 1.30904 1.87322 1.23031 0.97097 0.85969 1.00761 1.20089 0.92171 0.97297 1.20371 0.92899 0.92801 0.88677 0.85465 0.93360 0.93131 0.88514 0.89898 0.89851 0.89880 0.86651 0.91057 0.92884 0.93187 0.88551 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.80 101.05 0.99 1.30 16 2 O -0.32 -4.80 10.49 -19.06 -0.20 -5.00 16 3 C 0.18 3.13 6.69 -39.09 -0.26 2.87 16 4 C -0.33 -5.79 8.01 -39.31 -0.31 -6.11 16 5 C 0.20 4.07 6.69 -38.78 -0.26 3.81 16 6 O -0.29 -5.74 9.95 -19.05 -0.19 -5.93 16 7 C 0.03 0.38 9.81 101.05 0.99 1.37 16 8 C -0.07 -1.68 4.08 -104.58 -0.43 -2.11 16 9 C -0.15 -3.83 4.44 -104.24 -0.46 -4.29 16 10 C -0.07 -1.67 9.78 -39.27 -0.38 -2.05 16 11 C -0.24 -5.85 10.03 -39.41 -0.40 -6.24 16 12 C -0.10 -2.60 9.96 -39.96 -0.40 -3.00 16 13 C -0.16 -4.34 8.62 -39.30 -0.34 -4.68 16 14 C 0.14 3.80 5.58 -106.53 -0.59 3.20 16 15 C -0.45 -12.26 8.48 -37.96 -0.32 -12.58 16 16 H 0.07 2.01 7.29 -52.49 -0.38 1.63 16 17 C 0.08 2.03 5.16 -17.32 -0.09 1.94 16 18 N -0.79 -21.05 10.96 55.55 0.61 -20.44 16 19 Si 0.90 19.49 29.59 -169.99 -5.03 14.46 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 23 C 0.21 4.44 6.69 -38.79 -0.26 4.18 16 24 O -0.28 -6.01 9.95 -19.03 -0.19 -6.20 16 25 C 0.03 0.41 9.81 101.05 0.99 1.40 16 26 C -0.28 -5.17 8.96 -39.31 -0.35 -5.52 16 27 H 0.05 0.50 7.64 -51.93 -0.40 0.10 16 28 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.13 1.78 4.48 -52.49 -0.24 1.55 16 31 H 0.05 0.55 7.65 -51.93 -0.40 0.16 16 32 H 0.05 0.62 7.67 -51.93 -0.40 0.23 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 3.19 6.21 -52.48 -0.33 2.87 16 38 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 40 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 41 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.13 2.08 6.28 -52.48 -0.33 1.76 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -31.97 351.93 -6.91 -38.88 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.33 Total: 5.43 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -1.89 Total: -26.51 kcal Atomic # 7 Polarization: -21.05 SS G_CDS: 0.61 Total: -20.44 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.58 Total: -17.13 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.97 -6.91 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239649005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.284 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds