Wall clock time and date at job start Tue Mar 31 2020 11:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35784 * 116.99921 * 2 1 4 4 C 1.38895 * 119.83382 * 359.72705 * 3 2 1 5 5 C 1.38303 * 120.16955 * 179.72449 * 4 3 2 6 6 O 1.35779 * 120.08786 * 180.27375 * 5 4 3 7 7 C 1.42899 * 116.99782 * 0.27326 * 6 5 4 8 8 C 1.40300 * 119.82763 * 0.54933 * 5 4 3 9 9 C 1.47488 * 120.16275 * 179.75197 * 8 5 4 10 10 C 1.39408 * 120.35392 * 269.69541 * 9 8 5 11 11 C 1.37912 * 119.96576 * 179.70479 * 10 9 8 12 12 C 1.39029 * 120.70566 * 0.58023 * 11 10 9 13 13 C 1.36363 * 120.72698 * 359.71881 * 12 11 10 14 14 C 1.40770 * 120.00321 * 359.97438 * 13 12 11 15 15 C 1.40776 * 120.34978 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00412 * 154.10167 * 15 14 13 17 17 C 1.40000 * 119.99736 * 334.10414 * 15 14 13 18 18 N 1.30828 * 120.00035 * 343.60729 * 17 15 14 19 19 Si 1.86803 * 119.99911 * 163.60789 * 17 15 14 20 20 H 1.48497 * 109.47213 * 60.00272 * 19 17 15 21 21 H 1.48504 * 109.46752 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46944 * 300.00098 * 19 17 15 23 23 C 1.40293 * 119.67018 * 359.72036 * 8 5 4 24 24 O 1.35773 * 120.08619 * 180.02562 * 23 8 5 25 25 C 1.42903 * 117.00193 * 179.97438 * 24 23 8 26 26 C 1.38301 * 119.83062 * 0.02562 * 23 8 5 27 27 H 1.09005 * 109.46943 * 60.00316 * 1 2 3 28 28 H 1.08996 * 109.47259 * 299.99795 * 1 2 3 29 29 H 1.09007 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.91900 * 359.97438 * 4 3 2 31 31 H 1.08999 * 109.46991 * 299.99983 * 7 6 5 32 32 H 1.08996 * 109.47334 * 60.00364 * 7 6 5 33 33 H 1.08999 * 109.46905 * 180.02562 * 7 6 5 34 34 H 1.08007 * 120.01531 * 359.97438 * 10 9 8 35 35 H 1.07999 * 119.64831 * 180.30213 * 11 10 9 36 36 H 1.07991 * 119.63929 * 179.74605 * 12 11 10 37 37 H 1.08007 * 120.00173 * 179.97438 * 13 12 11 38 38 H 0.96998 * 119.99977 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.46858 * 300.00297 * 25 24 23 40 40 H 1.09001 * 109.47158 * 60.00110 * 25 24 23 41 41 H 1.09004 * 109.46979 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.92045 * 180.02562 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2856 2.3725 -0.0057 5 6 1.9062 3.6085 0.0000 6 8 1.1617 4.7440 0.0000 7 6 -0.2588 4.5884 -0.0001 8 6 3.3070 3.6860 -0.0001 9 6 3.9766 5.0001 0.0005 10 6 4.3020 5.6255 -1.2022 11 6 4.9225 6.8571 -1.1924 12 6 5.2407 7.4822 0.0080 13 6 4.9410 6.8935 1.2009 14 6 4.3019 5.6395 1.2262 15 6 3.9896 5.0249 2.4536 16 1 3.1725 4.3211 2.5127 17 6 4.7382 5.3260 3.5977 18 7 5.9029 5.9105 3.4822 19 14 4.0741 4.8931 5.2891 20 1 3.8600 3.4263 5.3764 21 1 5.0503 5.3130 6.3265 22 1 2.7843 5.5956 5.5091 23 6 4.0678 2.5072 0.0000 24 8 5.4239 2.5723 0.0005 25 6 6.1331 1.3317 0.0011 26 6 3.4327 1.2786 -0.0004 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2073 2.3113 -0.0106 31 1 -0.5640 4.0380 -0.8900 32 1 -0.5640 4.0381 0.8899 33 1 -0.7318 5.5704 -0.0005 34 1 4.0643 5.1476 -2.1412 35 1 5.1678 7.3391 -2.1272 36 1 5.7302 8.4447 -0.0044 37 1 5.1939 7.3894 2.1265 38 1 6.4214 6.1195 4.2748 39 1 5.8669 0.7615 0.8912 40 1 5.8676 0.7610 -0.8888 41 1 7.2056 1.5262 0.0010 42 1 4.0169 0.3702 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239649005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:59 Heat of formation + Delta-G solvation = -79.181416 kcal Electronic energy + Delta-G solvation = -26798.463952 eV Core-core repulsion = 23095.014963 eV Total energy + Delta-G solvation = -3703.448989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66974 -39.93040 -39.80385 -39.01336 -36.43231 -35.46084 -32.91622 -31.32821 -30.72811 -29.71069 -28.83576 -28.05497 -27.36768 -26.67170 -23.75980 -22.67288 -22.61890 -21.49709 -19.94308 -19.06609 -18.10285 -17.44921 -17.31131 -17.15421 -17.00031 -16.74438 -16.33706 -16.30997 -15.96279 -15.54937 -15.44666 -15.14619 -14.60766 -14.32972 -13.90478 -13.49017 -13.39486 -13.36534 -13.25242 -12.89109 -12.73935 -12.55273 -12.44630 -12.39905 -12.30723 -12.16568 -12.15585 -11.99142 -11.43490 -11.13305 -10.99497 -10.84354 -9.20174 -9.14540 -9.11272 -8.71825 -8.53734 -6.21168 0.49377 0.51092 1.04228 1.21636 1.33971 1.44818 1.55317 2.06499 2.21526 2.37855 2.77619 2.81972 2.88981 3.78776 4.00568 4.05527 4.15545 4.25393 4.30442 4.37665 4.39475 4.41664 4.41883 4.47170 4.52217 4.60519 4.67402 4.70522 4.72625 4.77078 4.85791 5.18176 5.21742 5.24367 5.38796 5.44247 5.50563 5.60028 5.81238 6.10869 6.20518 6.26395 6.29480 6.49645 6.58125 6.66019 6.81162 7.05210 7.18022 8.40525 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.005988 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.505369 B = 4674.904862 C = 5032.439001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.189 3.811 4 C -0.328 4.328 5 C 0.192 3.808 6 O -0.323 6.323 7 C 0.017 3.983 8 C -0.124 4.124 9 C -0.142 4.142 10 C -0.086 4.086 11 C -0.241 4.241 12 C -0.113 4.113 13 C -0.187 4.187 14 C 0.105 3.895 15 C -0.472 4.472 16 H 0.061 0.939 17 C 0.037 3.963 18 N -0.824 5.824 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.264 1.264 22 H -0.260 1.260 23 C 0.196 3.804 24 O -0.321 6.321 25 C 0.019 3.981 26 C -0.286 4.286 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.285 0.715 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -10.564 -4.689 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.142 3.858 4 C -0.347 4.347 5 C 0.145 3.855 6 O -0.236 6.236 7 C -0.077 4.077 8 C -0.126 4.126 9 C -0.143 4.143 10 C -0.104 4.104 11 C -0.260 4.260 12 C -0.132 4.132 13 C -0.207 4.207 14 C 0.103 3.897 15 C -0.501 4.501 16 H 0.079 0.921 17 C -0.177 4.177 18 N -0.451 5.451 19 Si 0.789 3.211 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.185 1.185 23 C 0.149 3.851 24 O -0.234 6.234 25 C -0.075 4.075 26 C -0.305 4.305 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.180 0.820 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.455 -10.314 -4.549 14.713 hybrid contribution -0.237 -0.121 0.834 0.876 sum -9.692 -10.436 -3.715 14.718 Atomic orbital electron populations 1.23402 0.76284 1.05826 1.02294 1.85999 1.23663 1.25892 1.88170 1.18340 0.91036 0.84128 0.92274 1.21167 1.01404 0.90505 1.21615 1.18581 0.89458 0.85396 0.92032 1.86171 1.20596 1.29190 1.87663 1.23372 0.76866 1.05243 1.02249 1.17279 0.89631 0.92130 1.13551 1.18397 1.08990 0.94242 0.92700 1.20802 0.98556 0.95236 0.95800 1.20532 1.10411 0.98239 0.96862 1.20670 1.00253 0.99113 0.93119 1.20985 1.06357 0.96555 0.96777 1.17838 0.89065 0.90552 0.92288 1.19367 1.14244 1.22983 0.93554 0.92116 1.26641 0.93636 0.92985 1.04422 1.69888 1.09725 1.32558 1.32915 0.85484 0.79404 0.79556 0.76696 1.18894 1.18812 1.18458 1.18523 0.82763 0.91919 0.91897 1.86201 1.15373 1.34248 1.87567 1.23331 0.97404 0.84548 1.02235 1.20261 0.93135 0.96936 1.20201 0.91506 0.92081 0.85554 0.82039 0.90932 0.91875 0.86773 0.88267 0.86847 0.87565 0.88276 0.90413 0.92153 0.90810 0.87099 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.80 113.37 1.11 1.38 16 2 O -0.32 -8.72 10.49 -91.13 -0.96 -9.68 16 3 C 0.19 6.21 6.69 22.59 0.15 6.36 16 4 C -0.33 -10.74 8.01 22.44 0.18 -10.56 16 5 C 0.19 7.88 6.69 22.79 0.15 8.04 16 6 O -0.32 -12.87 9.95 -91.08 -0.91 -13.78 16 7 C 0.02 0.43 9.81 113.37 1.11 1.54 16 8 C -0.12 -5.88 4.08 -19.84 -0.08 -5.96 16 9 C -0.14 -7.52 4.44 -19.62 -0.09 -7.60 16 10 C -0.09 -4.26 9.78 22.47 0.22 -4.04 16 11 C -0.24 -11.54 10.03 22.38 0.22 -11.32 16 12 C -0.11 -5.72 9.96 22.02 0.22 -5.50 16 13 C -0.19 -10.61 8.62 22.45 0.19 -10.41 16 14 C 0.10 6.05 5.58 -21.10 -0.12 5.94 16 15 C -0.47 -27.08 8.48 23.32 0.20 -26.88 16 16 H 0.06 3.51 7.29 -2.91 -0.02 3.49 16 17 C 0.04 2.00 5.16 85.27 0.44 2.44 16 18 N -0.82 -45.39 10.96 21.84 0.24 -45.15 16 19 Si 0.97 40.72 29.59 68.60 2.03 42.75 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 C 0.20 8.49 6.69 22.78 0.15 8.65 16 24 O -0.32 -14.06 9.95 -91.01 -0.91 -14.97 16 25 C 0.02 0.57 9.81 113.37 1.11 1.68 16 26 C -0.29 -10.31 8.96 22.44 0.20 -10.11 16 27 H 0.07 0.96 7.64 -2.38 -0.02 0.94 16 28 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.16 3.97 4.48 -2.91 -0.01 3.96 16 31 H 0.07 1.45 7.65 -2.39 -0.02 1.43 16 32 H 0.06 1.41 7.67 -2.39 -0.02 1.39 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 36 H 0.11 4.72 8.06 -2.92 -0.02 4.70 16 37 H 0.10 5.80 6.21 -2.91 -0.02 5.78 16 38 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 39 H 0.06 1.68 7.66 -2.39 -0.02 1.66 16 40 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 41 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 42 H 0.15 4.59 6.28 -2.91 -0.02 4.57 16 Total: -1.00 -73.14 351.93 5.93 -67.21 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 1.04 Total: 29.97 kcal Atomic # 6 Polarization: -61.75 SS G_CDS: 5.38 Total: -56.37 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.24 Total: -45.15 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.77 Total: -38.42 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -73.14 5.93 -67.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239649005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.967 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds