Wall clock time and date at job start Tue Mar 31 2020 11:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35613 * 117.00027 * 2 1 4 4 C 1.38514 * 120.08011 * 359.97438 * 3 2 1 5 5 C 1.38030 * 120.31213 * 179.97438 * 4 3 2 6 6 C 1.39986 * 120.46601 * 0.02562 * 5 4 3 7 7 C 1.48266 * 119.92688 * 179.97438 * 6 5 4 8 8 C 1.39763 * 120.17911 * 64.99268 * 7 6 5 9 9 O 1.35851 * 120.09266 * 359.96471 * 8 7 6 10 10 C 1.42896 * 116.99989 * 180.02562 * 9 8 7 11 11 C 1.38572 * 119.81473 * 180.23245 * 8 7 6 12 12 C 1.38248 * 120.18176 * 359.51549 * 11 8 7 13 13 C 1.38261 * 120.36197 * 0.47019 * 12 11 8 14 14 C 1.38568 * 120.17438 * 359.78357 * 13 12 11 15 15 O 1.35857 * 120.08856 * 179.97438 * 14 13 12 16 16 C 1.42897 * 117.00063 * 0.02562 * 15 14 13 17 17 C 1.38650 * 120.14659 * 0.24966 * 6 5 4 18 18 C 1.40516 * 119.68754 * 359.50229 * 17 6 5 19 19 C 1.41174 * 120.22474 * 180.24720 * 18 17 6 20 20 H 1.08001 * 119.99968 * 204.84875 * 19 18 17 21 21 C 1.39890 * 120.00226 * 24.85159 * 19 18 17 22 22 N 1.30892 * 119.99965 * 17.62360 * 21 19 18 23 23 Si 1.86806 * 120.00170 * 197.62680 * 21 19 18 24 24 H 1.48500 * 109.46921 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47102 * 119.99708 * 23 21 19 26 26 H 1.48501 * 109.46973 * 239.99915 * 23 21 19 27 27 H 1.08996 * 109.46664 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46975 * 300.00307 * 1 2 3 29 29 H 1.09000 * 109.46703 * 60.00392 * 1 2 3 30 30 H 1.08002 * 119.84515 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.76446 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47912 * 59.99297 * 10 9 8 33 33 H 1.08999 * 109.47325 * 179.97438 * 10 9 8 34 34 H 1.09006 * 109.46892 * 299.99129 * 10 9 8 35 35 H 1.07999 * 119.90845 * 179.72847 * 11 8 7 36 36 H 1.08001 * 119.82318 * 180.20712 * 12 11 8 37 37 H 1.07996 * 119.91168 * 179.76791 * 13 12 11 38 38 H 1.09005 * 109.47462 * 299.99822 * 16 15 14 39 39 H 1.09001 * 109.47414 * 59.99993 * 16 15 14 40 40 H 1.09004 * 109.47425 * 179.97438 * 16 15 14 41 41 H 1.07998 * 120.15004 * 179.72064 * 17 6 5 42 42 H 0.97002 * 119.99770 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9136 3.6034 0.0000 6 6 3.3106 3.6937 0.0005 7 6 3.9659 5.0237 0.0005 8 6 3.8178 5.8799 1.0952 9 8 3.0717 5.4965 2.1638 10 6 2.9642 6.4234 3.2461 11 6 4.4296 7.1232 1.0852 12 6 5.1929 7.5135 0.0006 13 6 5.3447 6.6723 -1.0861 14 6 4.7352 5.4278 -1.0940 15 8 4.8851 4.6029 -2.1630 16 6 5.6857 5.0822 -3.2452 17 6 4.0828 2.5422 -0.0047 18 6 3.4565 1.2843 0.0001 19 6 4.2318 0.1044 0.0001 20 1 3.8178 -0.8138 -0.3896 21 6 5.5363 0.1246 0.5050 22 7 5.9236 1.1071 1.2782 23 14 6.7254 -1.2505 0.0755 24 1 6.0474 -2.2336 -0.8071 25 1 7.9043 -0.6839 -0.6276 26 1 7.1697 -1.9275 1.3204 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2135 2.3131 -0.0005 31 1 1.3181 4.5044 -0.0008 32 1 2.5110 7.3481 2.8890 33 1 2.3425 5.9942 4.0317 34 1 3.9571 6.6351 3.6430 35 1 4.3126 7.7878 1.9284 36 1 5.6699 8.4824 0.0004 37 1 5.9396 6.9860 -1.9311 38 1 5.2493 5.9990 -3.6418 39 1 6.6953 5.2852 -2.8882 40 1 5.7235 4.3279 -4.0312 41 1 5.1605 2.6118 -0.0088 42 1 6.8283 1.1213 1.6280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239671046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:02 Heat of formation + Delta-G solvation = -59.050140 kcal Electronic energy + Delta-G solvation = -26381.946435 eV Core-core repulsion = 22679.370403 eV Total energy + Delta-G solvation = -3702.576031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.10644 -38.55347 -38.40635 -36.14902 -35.73648 -33.57937 -31.36988 -29.63781 -29.17297 -27.85512 -27.48462 -26.51807 -26.10668 -24.90763 -22.41369 -21.39635 -20.73843 -19.83511 -18.18989 -17.21532 -16.37694 -16.28582 -15.92168 -15.62348 -15.44207 -15.13198 -14.99441 -14.53555 -14.41764 -14.38152 -13.76126 -12.94749 -12.84294 -12.64479 -12.57988 -12.44172 -12.06042 -11.79804 -11.51266 -11.38658 -11.22856 -11.18920 -11.08725 -11.03882 -10.70280 -10.45911 -10.39608 -10.33272 -9.70677 -9.63633 -9.33229 -9.01505 -7.86314 -7.77432 -7.30676 -6.71314 -6.49015 -4.07230 1.70118 1.82316 2.88079 3.08218 3.18314 3.25154 3.29450 3.35809 4.06859 4.09084 4.13387 4.63230 4.75731 5.02174 5.23780 5.26884 5.33807 5.36673 5.39569 5.41229 5.60341 5.67534 5.71273 5.77986 5.78239 5.86788 5.94555 6.07013 6.25745 6.36146 6.47656 6.53820 6.65016 6.78071 6.81567 7.06906 7.26513 7.45044 7.52365 7.77133 7.79470 7.86391 7.96404 8.19497 8.36840 8.55948 8.85865 9.02407 9.22692 10.38588 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.005582 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.068886 B = 5014.962412 C = 5983.122365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.015 3.985 4 C -0.182 4.182 5 C -0.176 4.176 6 C -0.049 4.049 7 C -0.074 4.074 8 C 0.169 3.831 9 O -0.293 6.293 10 C 0.028 3.972 11 C -0.249 4.249 12 C -0.058 4.058 13 C -0.249 4.249 14 C 0.169 3.831 15 O -0.292 6.292 16 C 0.028 3.972 17 C -0.107 4.107 18 C 0.093 3.907 19 C -0.447 4.447 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.799 5.799 23 Si 0.904 3.096 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.277 1.277 27 H 0.079 0.921 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 10.909 -1.911 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.227 6.227 3 C -0.029 4.029 4 C -0.201 4.201 5 C -0.196 4.196 6 C -0.049 4.049 7 C -0.076 4.076 8 C 0.123 3.877 9 O -0.205 6.205 10 C -0.067 4.067 11 C -0.268 4.268 12 C -0.076 4.076 13 C -0.268 4.268 14 C 0.123 3.877 15 O -0.204 6.204 16 C -0.067 4.067 17 C -0.127 4.127 18 C 0.091 3.909 19 C -0.477 4.477 20 H 0.099 0.901 21 C -0.143 4.143 22 N -0.425 5.425 23 Si 0.729 3.271 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.202 1.202 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.082 10.406 -1.769 10.611 hybrid contribution 0.575 0.207 -0.005 0.611 sum -0.507 10.614 -1.774 10.773 Atomic orbital electron populations 1.22709 0.81980 1.01521 0.99859 1.85951 1.18030 1.28467 1.90255 1.19288 0.92359 0.82458 1.08833 1.20467 0.97158 0.92751 1.09698 1.20008 0.92783 0.94995 1.11792 1.17933 0.92435 0.89769 1.04790 1.17489 1.02753 0.96150 0.91185 1.18672 0.90607 0.91558 0.86852 1.86251 1.65844 1.42907 1.25477 1.23015 1.01645 0.93308 0.88760 1.20969 1.06894 0.97203 1.01764 1.20518 0.96359 0.98383 0.92326 1.20977 1.08507 0.95539 1.01758 1.18690 0.93483 0.88541 0.87024 1.86260 1.66958 1.41756 1.25460 1.23027 0.94319 1.00652 0.88738 1.21075 0.99187 0.89296 1.03114 1.16942 0.87230 0.93879 0.92877 1.19370 0.96546 0.96460 1.35325 0.90118 1.25843 0.98823 0.96702 0.92891 1.69880 1.18712 1.30777 1.23159 0.86330 0.80120 0.81510 0.79147 1.18443 1.19959 1.20228 0.90206 0.94235 0.94328 0.88725 0.89525 0.93168 0.88531 0.92966 0.85871 0.86225 0.85835 0.93151 0.92983 0.88415 0.85749 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.63 16 2 O -0.31 -7.62 9.76 -18.54 -0.18 -7.80 16 3 C 0.01 0.39 6.72 -38.28 -0.26 0.13 16 4 C -0.18 -4.36 9.01 -39.56 -0.36 -4.72 16 5 C -0.18 -4.24 9.44 -39.00 -0.37 -4.61 16 6 C -0.05 -1.22 4.57 -104.97 -0.48 -1.70 16 7 C -0.07 -1.63 5.32 -104.63 -0.56 -2.18 16 8 C 0.17 3.28 6.65 -38.89 -0.26 3.02 16 9 O -0.29 -5.63 9.70 -19.27 -0.19 -5.81 16 10 C 0.03 0.37 9.81 101.05 0.99 1.36 16 11 C -0.25 -3.90 9.03 -39.45 -0.36 -4.26 16 12 C -0.06 -0.83 10.03 -39.57 -0.40 -1.23 16 13 C -0.25 -3.91 9.03 -39.45 -0.36 -4.27 16 14 C 0.17 3.29 6.65 -38.89 -0.26 3.03 16 15 O -0.29 -5.70 9.68 -19.29 -0.19 -5.89 16 16 C 0.03 0.38 9.81 101.05 0.99 1.37 16 17 C -0.11 -2.94 8.04 -38.57 -0.31 -3.25 16 18 C 0.09 2.65 5.58 -106.73 -0.60 2.05 16 19 C -0.45 -12.64 8.71 -37.85 -0.33 -12.97 16 20 H 0.08 2.27 7.64 -52.49 -0.40 1.87 16 21 C 0.07 1.95 5.14 -17.33 -0.09 1.86 16 22 N -0.80 -21.75 10.97 55.55 0.61 -21.14 16 23 Si 0.90 19.80 29.59 -169.99 -5.03 14.77 16 24 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.67 7.66 -51.93 -0.40 0.28 16 29 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 30 H 0.09 1.98 6.27 -52.49 -0.33 1.65 16 31 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 35 H 0.12 1.55 6.29 -52.49 -0.33 1.22 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.57 6.29 -52.49 -0.33 1.24 16 38 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 39 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.12 3.58 6.17 -52.49 -0.32 3.26 16 42 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -32.97 351.83 -7.02 -39.99 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.35 Total: 5.32 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -2.00 Total: -24.73 kcal Atomic # 7 Polarization: -21.75 SS G_CDS: 0.61 Total: -21.14 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.55 Total: -19.50 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.97 -7.02 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239671046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.065 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds