Wall clock time and date at job start Tue Mar 31 2020 11:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35613 * 117.00027 * 2 1 4 4 C 1.38514 * 120.08011 * 359.97438 * 3 2 1 5 5 C 1.38030 * 120.31213 * 179.97438 * 4 3 2 6 6 C 1.39986 * 120.46601 * 0.02562 * 5 4 3 7 7 C 1.48266 * 119.92688 * 179.97438 * 6 5 4 8 8 C 1.39763 * 120.17911 * 64.99268 * 7 6 5 9 9 O 1.35851 * 120.09266 * 359.96471 * 8 7 6 10 10 C 1.42896 * 116.99989 * 180.02562 * 9 8 7 11 11 C 1.38572 * 119.81473 * 180.23245 * 8 7 6 12 12 C 1.38248 * 120.18176 * 359.51549 * 11 8 7 13 13 C 1.38261 * 120.36197 * 0.47019 * 12 11 8 14 14 C 1.38568 * 120.17438 * 359.78357 * 13 12 11 15 15 O 1.35857 * 120.08856 * 179.97438 * 14 13 12 16 16 C 1.42897 * 117.00063 * 0.02562 * 15 14 13 17 17 C 1.38650 * 120.14659 * 0.24966 * 6 5 4 18 18 C 1.40516 * 119.68754 * 359.50229 * 17 6 5 19 19 C 1.41174 * 120.22474 * 180.24720 * 18 17 6 20 20 H 1.08001 * 119.99968 * 204.84875 * 19 18 17 21 21 C 1.39890 * 120.00226 * 24.85159 * 19 18 17 22 22 N 1.30892 * 119.99965 * 17.62360 * 21 19 18 23 23 Si 1.86806 * 120.00170 * 197.62680 * 21 19 18 24 24 H 1.48500 * 109.46921 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47102 * 119.99708 * 23 21 19 26 26 H 1.48501 * 109.46973 * 239.99915 * 23 21 19 27 27 H 1.08996 * 109.46664 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46975 * 300.00307 * 1 2 3 29 29 H 1.09000 * 109.46703 * 60.00392 * 1 2 3 30 30 H 1.08002 * 119.84515 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.76446 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47912 * 59.99297 * 10 9 8 33 33 H 1.08999 * 109.47325 * 179.97438 * 10 9 8 34 34 H 1.09006 * 109.46892 * 299.99129 * 10 9 8 35 35 H 1.07999 * 119.90845 * 179.72847 * 11 8 7 36 36 H 1.08001 * 119.82318 * 180.20712 * 12 11 8 37 37 H 1.07996 * 119.91168 * 179.76791 * 13 12 11 38 38 H 1.09005 * 109.47462 * 299.99822 * 16 15 14 39 39 H 1.09001 * 109.47414 * 59.99993 * 16 15 14 40 40 H 1.09004 * 109.47425 * 179.97438 * 16 15 14 41 41 H 1.07998 * 120.15004 * 179.72064 * 17 6 5 42 42 H 0.97002 * 119.99770 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9136 3.6034 0.0000 6 6 3.3106 3.6937 0.0005 7 6 3.9659 5.0237 0.0005 8 6 3.8178 5.8799 1.0952 9 8 3.0717 5.4965 2.1638 10 6 2.9642 6.4234 3.2461 11 6 4.4296 7.1232 1.0852 12 6 5.1929 7.5135 0.0006 13 6 5.3447 6.6723 -1.0861 14 6 4.7352 5.4278 -1.0940 15 8 4.8851 4.6029 -2.1630 16 6 5.6857 5.0822 -3.2452 17 6 4.0828 2.5422 -0.0047 18 6 3.4565 1.2843 0.0001 19 6 4.2318 0.1044 0.0001 20 1 3.8178 -0.8138 -0.3896 21 6 5.5363 0.1246 0.5050 22 7 5.9236 1.1071 1.2782 23 14 6.7254 -1.2505 0.0755 24 1 6.0474 -2.2336 -0.8071 25 1 7.9043 -0.6839 -0.6276 26 1 7.1697 -1.9275 1.3204 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2135 2.3131 -0.0005 31 1 1.3181 4.5044 -0.0008 32 1 2.5110 7.3481 2.8890 33 1 2.3425 5.9942 4.0317 34 1 3.9571 6.6351 3.6430 35 1 4.3126 7.7878 1.9284 36 1 5.6699 8.4824 0.0004 37 1 5.9396 6.9860 -1.9311 38 1 5.2493 5.9990 -3.6418 39 1 6.6953 5.2852 -2.8882 40 1 5.7235 4.3279 -4.0312 41 1 5.1605 2.6118 -0.0088 42 1 6.8283 1.1213 1.6280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239671046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:02 Heat of formation + Delta-G solvation = -79.583781 kcal Electronic energy + Delta-G solvation = -26382.836840 eV Core-core repulsion = 22679.370403 eV Total energy + Delta-G solvation = -3703.466437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44537 -40.24001 -39.84851 -37.84423 -37.14501 -35.53094 -32.91748 -31.58400 -30.42078 -29.47484 -28.58524 -28.01577 -27.42637 -26.82711 -23.88397 -22.91531 -22.42653 -21.54208 -19.58649 -19.03153 -18.23771 -17.59801 -17.26219 -17.13583 -16.81084 -16.60743 -16.32047 -16.22806 -16.12967 -15.60539 -15.32075 -14.69698 -14.46294 -14.23620 -14.02774 -13.63281 -13.45731 -13.38575 -13.04535 -12.95610 -12.80428 -12.72193 -12.47443 -12.31233 -12.28094 -12.12300 -12.02912 -11.55344 -11.46189 -11.35785 -11.20883 -10.98808 -9.37330 -9.31167 -9.02014 -8.62950 -8.39805 -6.16337 0.36150 0.53845 1.00370 1.16207 1.36533 1.50177 1.53262 2.14427 2.25176 2.74105 2.85696 2.88816 2.95656 3.71351 3.85640 4.08933 4.18415 4.28418 4.33631 4.37995 4.42283 4.43671 4.45780 4.48637 4.50021 4.53700 4.63162 4.72433 4.73343 4.74414 4.88458 5.12173 5.24936 5.30302 5.35647 5.48255 5.50425 5.57289 5.65636 5.88982 5.91284 6.23411 6.35478 6.53382 6.56522 6.66239 6.85713 6.98576 7.28409 8.42889 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.005582 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.068886 B = 5014.962412 C = 5983.122365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C -0.001 4.001 4 C -0.181 4.181 5 C -0.181 4.181 6 C -0.043 4.043 7 C -0.133 4.133 8 C 0.156 3.844 9 O -0.332 6.332 10 C 0.019 3.981 11 C -0.246 4.246 12 C -0.042 4.042 13 C -0.247 4.247 14 C 0.154 3.846 15 O -0.334 6.334 16 C 0.019 3.981 17 C -0.128 4.128 18 C 0.055 3.945 19 C -0.484 4.484 20 H 0.068 0.932 21 C 0.032 3.968 22 N -0.831 5.831 23 Si 0.979 3.021 24 H -0.261 1.261 25 H -0.263 1.263 26 H -0.265 1.265 27 H 0.112 0.888 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 13.292 -2.032 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.255 6.255 3 C -0.045 4.045 4 C -0.200 4.200 5 C -0.200 4.200 6 C -0.043 4.043 7 C -0.134 4.134 8 C 0.110 3.890 9 O -0.245 6.245 10 C -0.075 4.075 11 C -0.265 4.265 12 C -0.060 4.060 13 C -0.265 4.265 14 C 0.108 3.892 15 O -0.247 6.247 16 C -0.075 4.075 17 C -0.148 4.148 18 C 0.053 3.947 19 C -0.515 4.515 20 H 0.086 0.914 21 C -0.181 4.181 22 N -0.458 5.458 23 Si 0.799 3.201 24 H -0.184 1.184 25 H -0.187 1.187 26 H -0.190 1.190 27 H 0.130 0.870 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.683 12.808 -1.888 12.964 hybrid contribution 0.329 -0.375 0.047 0.501 sum -0.354 12.433 -1.841 12.574 Atomic orbital electron populations 1.23073 0.78751 1.04134 1.00869 1.85890 1.21432 1.27894 1.90285 1.19414 0.92195 0.83837 1.09096 1.20792 0.98705 0.91997 1.08513 1.20344 0.92975 0.95713 1.10957 1.18237 0.92836 0.91009 1.02233 1.17694 1.05927 0.95746 0.94045 1.18882 0.91188 0.92550 0.86339 1.86179 1.66128 1.45565 1.26673 1.23346 1.02995 0.93583 0.87617 1.21358 1.05840 0.95978 1.03288 1.21120 0.94490 0.99634 0.90727 1.21357 1.07836 0.93977 1.03369 1.18942 0.93722 0.89941 0.86633 1.86195 1.68227 1.43519 1.26762 1.23341 0.94531 1.02095 0.87555 1.20906 0.98192 0.90268 1.05407 1.17382 0.88881 0.94484 0.93971 1.19476 0.98287 0.96197 1.37491 0.91424 1.26693 0.99900 0.99438 0.92060 1.69954 1.19418 1.32632 1.23815 0.85223 0.77579 0.78072 0.79180 1.18433 1.18709 1.18957 0.86959 0.93299 0.92987 0.85578 0.87806 0.90683 0.87337 0.91674 0.82481 0.81460 0.82620 0.90650 0.91622 0.87490 0.88227 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.81 113.37 1.11 2.06 16 2 O -0.34 -17.08 9.76 -89.24 -0.87 -17.95 16 3 C 0.00 -0.05 6.72 23.11 0.16 0.10 16 4 C -0.18 -8.87 9.01 22.29 0.20 -8.67 16 5 C -0.18 -8.94 9.44 22.64 0.21 -8.73 16 6 C -0.04 -2.24 4.57 -20.09 -0.09 -2.33 16 7 C -0.13 -5.96 5.32 -19.87 -0.11 -6.07 16 8 C 0.16 6.01 6.65 22.72 0.15 6.16 16 9 O -0.33 -12.79 9.70 -91.87 -0.89 -13.68 16 10 C 0.02 0.46 9.81 113.37 1.11 1.57 16 11 C -0.25 -6.97 9.03 22.35 0.20 -6.77 16 12 C -0.04 -1.04 10.03 22.28 0.22 -0.81 16 13 C -0.25 -7.12 9.03 22.35 0.20 -6.92 16 14 C 0.15 6.02 6.65 22.72 0.15 6.17 16 15 O -0.33 -13.40 9.68 -91.95 -0.89 -14.29 16 16 C 0.02 0.49 9.81 113.37 1.11 1.60 16 17 C -0.13 -7.51 8.04 22.92 0.18 -7.32 16 18 C 0.06 3.33 5.58 -21.23 -0.12 3.22 16 19 C -0.48 -29.18 8.71 23.39 0.20 -28.97 16 20 H 0.07 4.07 7.64 -2.91 -0.02 4.05 16 21 C 0.03 1.78 5.14 85.23 0.44 2.21 16 22 N -0.83 -47.64 10.97 21.82 0.24 -47.40 16 23 Si 0.98 42.10 29.59 68.60 2.03 44.13 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.05 1.62 7.66 -2.39 -0.02 1.60 16 29 H 0.05 1.68 7.65 -2.39 -0.02 1.66 16 30 H 0.13 5.19 6.27 -2.91 -0.02 5.17 16 31 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.07 1.42 7.65 -2.39 -0.02 1.40 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.39 7.67 -2.38 -0.02 1.37 16 35 H 0.16 3.27 6.29 -2.91 -0.02 3.25 16 36 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.16 3.36 6.29 -2.91 -0.02 3.34 16 38 H 0.07 1.53 7.66 -2.38 -0.02 1.52 16 39 H 0.07 1.48 7.66 -2.39 -0.02 1.47 16 40 H 0.11 2.47 8.14 -2.38 -0.02 2.46 16 41 H 0.10 6.21 6.17 -2.91 -0.02 6.19 16 42 H 0.28 14.69 8.30 -92.71 -0.77 13.92 16 Total: -1.00 -79.10 351.83 6.00 -73.10 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 1.04 Total: 29.61 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 5.35 Total: -53.51 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.24 Total: -47.40 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.65 Total: -45.92 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -79.10 6.00 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239671046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.487 kcal (2) G-P(sol) polarization free energy of solvation -79.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds